ViewGene
Locus Name:
GeneID:
Location:

GeneID:1102
TrivialName: PA14_63730
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_63730
PAO1 Ortholog Locus:PA4821
Sequence Length:1362
Protein Length:453
Start: 5681516
Stop: 5682877
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG08206.1|AE004895_6 (AE004895) probable transporter [Pseudomonas aeruginosa PAO1]
Identities = 450/453 (99%), Positives = 450/453 (99%)
Sequence:
ATGAGCCTGTTGCGCGATGCCTGGCGCCACGCCCCGACCCACCACAGGGTCTGGGCGCTGGCCGGGCCGATG
ATTCTGTCGAACGTTTCCGTTCCCCTGGTGCACCTGGTGGACAGCACGGTGGTCGGCCACCTGCCGCACGCC
TACCAGCTCGGCGCGGTAGCCGTGGGCGGCAGCCTCTACACCCTGATGGTCGGCGTGCTCGGCTTCCTGCGC
ATGGGCACCACCGGCTTCGCCGCCCAGGCCGCCGGCCGCGATGATGGCGGCGCGCTGCGCCTGATCCTCGCC
CAGGGCCTGGGCATGGCGCTGCTCCTGGCCCTGCTGCTCGGCGCGCTGGCCCTGCCCCTGAGCGGCTGGGCC
CTGCAACTGATGCAACCGTCGGCGGAACTGACCGGCGAGGCCCGCGCCTTCTTCCATACCCGCCTGCTCGGC
CTGCCGGCGGCCCTGGCCAGCTACGCACTGGTCGGCTGGTTCCTCGGCACGCAGAACGCACGGGCGCCATTG
GCGATCCTGTTGACCACCAACCTGAGCAACATCGCCCTGGTGCTCTGGTTCGTCCACGGCCTCGACTGGGGC
GTGCAAGGCGCGGCCCGCGCCTCGGTGCTGGCGGAATGGAGCGGCGCCCTGCTCGGCCTGGCCCTGACCCGA
CGCGACCTGGCCCGGCGCCCCGGGCGGGCGCAGTGGCAACGCCTGCGCCACTGGCTGTCCTGGCTGCCGCTG
CTGATGGTCAACCGGGATATCTTCATCCGCAGCCTGGCCCTGCAACTGGTGTTCTTCCTGCTCACCGTACAG
GGCACCCGCCTCGGCGACGCCACGGTAGCCGCCAACGCCCTGCTGCTCAACGGCCTGCTCCTGACGTCCTAC
GCCCTCGACGGTCTCGCCCACGCGGTGGAGGCGCTCTGCGGCCACGCCATCGGCGCCCGCGACCGAACTGCC
CTGCGCCGCGCGCTGGTGGTGGCCGGTGGTTGGTCGCTGCTGGCAAGCCTGGCGTTCGCCGCGCTGTTCGCT
CTGTTCGGCCACCTGTTCATCGACCTGCAGAGCGACATCGCCGGCGTCCGCGAAGTCGCCTACGCCTATCTG
CCGTACCTGGCCTGCCTGCCGCTGCTGGGGATGTGGAGCTATCTGCTCGACGGCCTGTTCATCGGCGCCACC
CGCGCCCGCGAGATGCGTAACGCGATGCTCGTCGCGGTGGCCGCCAGCCTGCCCCTCGGCTGGCTGTTGCAG
GGGCTGGGCAACCACGGGCTATGGCTGGCGTTCCTCGCCTTCATGCTGCTGCGCGGGCTGGTCCTGGCCGCC
TACGGCTGGCGCCTGACCCGCCGCGATGGCTGGTTCGCCGCTCAGGGCGCCGACAGCGGGCGATAG
Translation:
MSLLRDAWRHAPTHHRVWALAGPMILSNVSVPLVHLVDSTVVGHLPHAYQLGAVAVGGSLYTLMVGVLGFLR
MGTTGFAAQAAGRDDGGALRLILAQGLGMALLLALLLGALALPLSGWALQLMQPSAELTGEARAFFHTRLLG
LPAALASYALVGWFLGTQNARAPLAILLTTNLSNIALVLWFVHGLDWGVQGAARASVLAEWSGALLGLALTR
RDLARRPGRAQWQRLRHWLSWLPLLMVNRDIFIRSLALQLVFFLLTVQGTRLGDATVAANALLLNGLLLTSY
ALDGLAHAVEALCGHAIGARDRTALRRALVVAGGWSLLASLAFAALFALFGHLFIDLQSDIAGVREVAYAYL
PYLACLPLLGMWSYLLDGLFIGATRAREMRNAMLVAVAASLPLGWLLQGLGNHGLWLAFLAFMLLRGLVLAA
YGWRLTRRDGWFAAQGADSGR*
AnnotationID:1111GeneID:1102
AnnotatorUID: diggins
Modification Date/Time: 2005-03-11 06:06:37
Gene Name:
Confidence Code:3
GeneProduct:putative transporter
Cell Localization:()
Synonyms:dinF
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(27) Transport of small molecules
Alternate Gene Product Name:putative DNA-damage-inducible protein F
Functional Category Confidence Code:5
COGs:COG0534
Secondary Functional Category(ies):DNA replication, recombination, and repair
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAN66196.1|AE016247_6 (AE016776) MATE efflux family protein [Pseudomonas putida KT2440]
          Length = 445

 Score =  642 bits (1657), Expect = 0.0
 Identities = 328/443 (74%), Positives = 362/443 (81%)

>gb|AAO58273.1| (AE016873) DNA-damage-inducible protein F [Pseudomonas syringae pv.
           tomato str. DC3000]
          Length = 446

 Score =  631 bits (1628), Expect = e-180
 Identities = 321/444 (72%), Positives = 355/444 (79%)








 
Structural Features:
COG0534, NorM, Na+-driven multidrug efflux pump [Defense mechanisms]
CD-Length = 455 residues,  97.1% aligned
Score =  227 bits (580), Expect = 2e-60
Identities = 147/443 (33%), Positives = 201/443 (45%), Gaps = 6/443 (1%)






   
Genomic Context:






   
Comment:


















    ReferenceID:2207




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:19349




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:35223




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:1102_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:1102
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
1986
                           PA4821_tr
                           translation of PA4821
                           453
                           99.33
                           99.33
                           0
                           2298.0
     

     
     
67803
                           gb|AAG08206.1|AE004895_6
                           (AE004895) probable transporter [Pseudomonas aeruginosa PAO1]
                           453
                           99.33
                           99.33
                           0
                           2298.0
     

     
     
67804
                           gb|AAN66196.1|AE016247_6
                           (AE016776) MATE efflux family protein [Pseudomonas putida KT2440]
                           453
                           72.40
                           79.91
                           8
                           1654.0
     

     
     
67805
                           gb|AAO58273.1|
                           (AE016873) DNA-damage-inducible protein F [Pseudomonas syringae pv. tomato str. DC3000]
                           453
                           70.86
                           78.36
                           7
                           1626.0
     

     
     
67816
                           gb|AAL23062.1|
                           (AE008898) DNA-damage-inducible protein F [Salmonella typhimurium LT2]
                           471
                           41.82
                           56.05
                           48
                           815.0
     

     






      

          
GC ORFID: 44104How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA4821Glimmer Score: 

          
Start: 4945196Stop: 4946557

          
Length: 1362


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TAGTruncated Stop: 

          
Homolog: t_PA4821 translation of PA4821Homolog Bit Score 889.0

          
Other Homologs:  psyr_15may02_Scaffold4_revised_gene5315 (ORF: BLASTX 617.0), t_PA4821 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAGCCTGTTGCGCGATGCCTGGCGCCACGCCCCGACCCACCACAGGGTCTGGGCGCTGGCCGGGCCGATG 
ATTCTGTCGAACGTTTCCGTTCCCCTGGTGCACCTGGTGGACAGCACGGTGGTCGGCCACCTGCCGCACGCC 
TACCAGCTCGGCGCGGTAGCCGTGGGCGGCAGCCTCTACACCCTGATGGTCGGCGTGCTCGGCTTCCTGCGC 
ATGGGCACCACCGGCTTCGCCGCCCAGGCCGCCGGCCGCGATGATGGCGGCGCGCTGCGCCTGATCCTCGCC 
CAGGGCCTGGGCATGGCGCTGCTCCTGGCCCTGCTGCTCGGCGCGCTGGCCCTGCCCCTGAGCGGCTGGGCC 
CTGCAACTGATGCAACCGTCGGCGGAACTGACCGGCGAGGCCCGCGCCTTCTTCCATACCCGCCTGCTCGGC 
CTGCCGGCGGCCCTGGCCAGCTACGCACTGGTCGGCTGGTTCCTCGGCACGCAGAACGCACGGGCGCCATTG 
GCGATCCTGTTGACCACCAACCTGAGCAACATCGCCCTGGTGCTCTGGTTCGTCCACGGCCTCGACTGGGGC 
GTGCAAGGCGCGGCCCGCGCCTCGGTGCTGGCGGAATGGAGCGGCGCCCTGCTCGGCCTGGCCCTGACCCGA 
CGCGACCTGGCCCGGCGCCCCGGGCGGGCGCAGTGGCAACGCCTGCGCCACTGGCTGTCCTGGCTGCCGCTG 
CTGATGGTCAACCGGGATATCTTCATCCGCAGCCTGGCCCTGCAACTGGTGTTCTTCCTGCTCACCGTACAG 
GGCACCCGCCTCGGCGACGCCACGGTAGCCGCCAACGCCCTGCTGCTCAACGGCCTGCTCCTGACGTCCTAC 
GCCCTCGACGGTCTCGCCCACGCGGTGGAGGCGCTCTGCGGCCACGCCATCGGCGCCCGCGACCGAACTGCC 
CTGCGCCGCGCGCTGGTGGTGGCCGGTGGTTGGTCGCTGCTGGCAAGCCTGGCGTTCGCCGCGCTGTTCGCT 
CTGTTCGGCCACCTGTTCATCGACCTGCAGAGCGACATCGCCGGCGTCCGCGAAGTCGCCTACGCCTATCTG 
CCGTACCTGGCCTGCCTGCCGCTGCTGGGGATGTGGAGCTATCTGCTCGACGGCCTGTTCATCGGCGCCACC 
CGCGCCCGCGAGATGCGTAACGCGATGCTCGTCGCGGTGGCCGCCAGCCTGCCCCTCGGCTGGCTGTTGCAG 
GGGCTGGGCAACCACGGGCTATGGCTGGCGTTCCTCGCCTTCATGCTGCTGCGCGGGCTGGTCCTGGCCGCC 
TACGGCTGGCGCCTGACCCGCCGCGATGGCTGGTTCGCCGCTCAGGGCGCCGACAGCGGGCGATAG