ViewGene
Locus Name:
GeneID:
Location:

GeneID:1101
TrivialName: PA14_12350
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_12350
PAO1 Ortholog Locus:PA3980
Sequence Length:1341
Protein Length:446
Start: 1065077
Stop: 1063737
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG07367.1|AE004816_3 (AE004816) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 446/446 (100%), Positives = 446/446 (100%)
Sequence:
ATGGCCAAGAAGCTTTTCATCGAAACCCACGGCTGCCAGATGAACGAGTACGACTCGTCGCGAATGGCGGAC
CTGCTCGGTGAACACCAAGCCCTCGAGGTGACCGAAAACGCCGCCGAGGCCGACGTCATCCTGCTCAATACC
TGCTCGATCCGCGAGAAGGCCCAGGAAAAGGTGTTTTCCAAGCTCGGCATGTGGCGCGAGCTGAAACAGCAG
AATCCCGACCTGGTGATCGGCGTCGGCGGCTGCGTGGCCAGCCAGGAAGGCGCCGCGATCCGTGAGCGCGCG
CCCTATGTCGACGTGGTCTTCGGCCCGCAGACCCTGCACCGCCTGCCGGAAATGATCGACGCCGCGCGCAGC
ACGCGCAAGCCGCAGGTCGACGTGTCCTTCCCGGAAATCGAGAAATTCGACCGCCTGCCGGAACCGCGGGTC
GATGGCCCCACCGCCTTCGTCTCGGTGATGGAAGGCTGCAGCAAGTACTGCAGCTTCTGCGTGGTGCCCTAC
ACCCGCGGCGAGGAAGTCAGCCGACCATTCGACGACGTGATCGCCGAAGTGATCCACCTGGCCGAGAACGGC
GTCCGCGAAGTCACCCTGCTGGGACAGAACGTCAACGGCTTCCGCGGCCTGACCCACGATGGCCGCCTGGCC
GACTTCGCCGAACTGCTGCGGGTGGTCGCCGCCGTCGACGGTATCGAGCGCATCCGCTATACCACCTCGCAC
CCGCTGGAATTCTCCGACGCGCTGATCCAGGCCCACGCCGAGGTGCCGGAGCTGGTGAAATTCATCCACCTG
CCGGTGCAGTCGGGCTCCGACCGCGTGCTGGCGGCGATGAAGCGCAACCATACCGTGCTGGAATACAAGTCG
CGTATCCGCAAGCTGAAGGCCGCGGTACCGGACATCTGCATCAGCTCCGACTTCATCGTCGGTTTCCCCGGC
GAAACCGAGAAGGACTTCGAGCAGACCATGAAGCTGGTGGAGGACGTCGGCTTCGACTTCTCCTTCTCCTTC
ATCTACAGCGCGCGGCCCGGCACGCCCGCCGCCGACCTCGCCGACGACCTGCCGGAAGAAGTGAAGAAACAG
CGCCTGCAGATCCTCCAGAGCCGCATCCACCAGCAAGGCTACGAGATCAGCCGGCGCATGGTCGGCAGCACC
CAGCGGATCCTGGTCACCGACTTCTCGAAGAAGGACCCAGGCATGCTCCAGGGGCGCACCGAGAACAACCGG
ATCGTCAACTTCCGCTGCGACAATCCACGCCTGATCGGCCAGTTCGCCCAGGTGCACATCGACGACGCGCTG
CCGCACTCGCTGCGCGGTACCCTGATCGACAGCACCCTGCATTGA
Translation:
MAKKLFIETHGCQMNEYDSSRMADLLGEHQALEVTENAAEADVILLNTCSIREKAQEKVFSKLGMWRELKQQ
NPDLVIGVGGCVASQEGAAIRERAPYVDVVFGPQTLHRLPEMIDAARSTRKPQVDVSFPEIEKFDRLPEPRV
DGPTAFVSVMEGCSKYCSFCVVPYTRGEEVSRPFDDVIAEVIHLAENGVREVTLLGQNVNGFRGLTHDGRLA
DFAELLRVVAAVDGIERIRYTTSHPLEFSDALIQAHAEVPELVKFIHLPVQSGSDRVLAAMKRNHTVLEYKS
RIRKLKAAVPDICISSDFIVGFPGETEKDFEQTMKLVEDVGFDFSFSFIYSARPGTPAADLADDLPEEVKKQ
RLQILQSRIHQQGYEISRRMVGSTQRILVTDFSKKDPGMLQGRTENNRIVNFRCDNPRLIGQFAQVHIDDAL
PHSLRGTLIDSTLH*
AnnotationID:1110GeneID:1101
AnnotatorUID: urbach
Modification Date/Time: 2004-08-30 16:04:22
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:orf2
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG0621,KOG2492,KOG4355,smart00729
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
gb|AAG07367.1|AE004816_3 (AE004816) conserved hypothetical protein
[Pseudomonas aeruginosa PAO1]
Length = 446
Score =  889 bits (2296), Expect = 0.0
Identities = 446/446 (100%), Positives = 446/446 (100%)






 
Structural Features:






   
Genomic Context:






   
Comment:


















    ReferenceID:2205




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:19347




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:1101
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
1985
                           PA3980_tr
                           translation of PA3980
                           446
                           99.99
                           99.99
                           0
                           2296.0
     

     
     
67725
                           gb|AAG07367.1|AE004816_3
                           (AE004816) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
                           446
                           99.99
                           99.99
                           0
                           2296.0
     

     
     
67726
                           emb|CAA57577.1|
                           (X82072) hypothetical protein [Pseudomonas aeruginosa]
                           446
                           99.32
                           99.55
                           0
                           2280.0
     

     
     
67727
                           gb|AAO58233.1|
                           (AE016873) tRNA-i(6)A37 modification enzyme MiaB [Pseudomonas syringae pv. tomato str. DC3000]
                           446
                           82.95
                           91.25
                           4
                           1967.0
     

     
     
67745
                           gb|AAO90113.1|
                           (AE016961) conserved hypothetical protein [Coxiella burnetii RSA 493]
                           446
                           66.36
                           80.26
                           7
                           1561.0
     

     






      

          
GC ORFID: 44103How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA3980Glimmer Score: 

          
Start: 3888861Stop: 3890201

          
Length: 1341


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA3980 translation of PA3980Homolog Bit Score 889.0

          
Other Homologs:  psyr_15may02_Scaffold4_revised_gene5726 (ORF: BLASTX 770.0), t_PA3980 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGGCCAAGAAGCTTTTCATCGAAACCCACGGCTGCCAGATGAACGAGTACGACTCGTCGCGAATGGCGGAC 
CTGCTCGGTGAACACCAAGCCCTCGAGGTGACCGAAAACGCCGCCGAGGCCGACGTCATCCTGCTCAATACC 
TGCTCGATCCGCGAGAAGGCCCAGGAAAAGGTGTTTTCCAAGCTCGGCATGTGGCGCGAGCTGAAACAGCAG 
AATCCCGACCTGGTGATCGGCGTCGGCGGCTGCGTGGCCAGCCAGGAAGGCGCCGCGATCCGTGAGCGCGCG 
CCCTATGTCGACGTGGTCTTCGGCCCGCAGACCCTGCACCGCCTGCCGGAAATGATCGACGCCGCGCGCAGC 
ACGCGCAAGCCGCAGGTCGACGTGTCCTTCCCGGAAATCGAGAAATTCGACCGCCTGCCGGAACCGCGGGTC 
GATGGCCCCACCGCCTTCGTCTCGGTGATGGAAGGCTGCAGCAAGTACTGCAGCTTCTGCGTGGTGCCCTAC 
ACCCGCGGCGAGGAAGTCAGCCGACCATTCGACGACGTGATCGCCGAAGTGATCCACCTGGCCGAGAACGGC 
GTCCGCGAAGTCACCCTGCTGGGACAGAACGTCAACGGCTTCCGCGGCCTGACCCACGATGGCCGCCTGGCC 
GACTTCGCCGAACTGCTGCGGGTGGTCGCCGCCGTCGACGGTATCGAGCGCATCCGCTATACCACCTCGCAC 
CCGCTGGAATTCTCCGACGCGCTGATCCAGGCCCACGCCGAGGTGCCGGAGCTGGTGAAATTCATCCACCTG 
CCGGTGCAGTCGGGCTCCGACCGCGTGCTGGCGGCGATGAAGCGCAACCATACCGTGCTGGAATACAAGTCG 
CGTATCCGCAAGCTGAAGGCCGCGGTACCGGACATCTGCATCAGCTCCGACTTCATCGTCGGTTTCCCCGGC 
GAAACCGAGAAGGACTTCGAGCAGACCATGAAGCTGGTGGAGGACGTCGGCTTCGACTTCTCCTTCTCCTTC 
ATCTACAGCGCGCGGCCCGGCACGCCCGCCGCCGACCTCGCCGACGACCTGCCGGAAGAAGTGAAGAAACAG 
CGCCTGCAGATCCTCCAGAGCCGCATCCACCAGCAAGGCTACGAGATCAGCCGGCGCATGGTCGGCAGCACC 
CAGCGGATCCTGGTCACCGACTTCTCGAAGAAGGACCCAGGCATGCTCCAGGGGCGCACCGAGAACAACCGG 
ATCGTCAACTTCCGCTGCGACAATCCACGCCTGATCGGCCAGTTCGCCCAGGTGCACATCGACGACGCGCTG 
CCGCACTCGCTGCGCGGTACCCTGATCGACAGCACCCTGCATTGA