|
|
|
Modification Date/Time: | 2006-04-06 13:01:23 |
|
|
|
|
|
|
|
|
|
|
|
|
Missense Discrepancy: | FALSE |
|
Comments: Homology: gb|AAG03844.1|AE004483_2 (AE004483) RNA helicase DbpA [Pseudomonas aeruginosa PAO1]
Identities = 457/458 (99%), Positives = 458/458 (100%)
|
Sequence:
GTGACCTCCACCGCTTTCTCCTCGCTGCCGCTTTCCGCGGACCTCCTGGCCAATCTCGACTCCCTCGGTTAC
CGGGAGATGACGCCGATCCAGGCGCAGAGCCTGCCGCTGATCCTCCAGGGCCACGACCTGATCGCCCAGGCC
AAGACCGGCAGCGGCAAGACCGCGGCTTTCGGCCTCGCCCTGCTCAGCCCGCTGAACCCGCGCTACTTCGGC
TGCCAGGCGCTGGTGCTGTGCCCGACCCGCGAACTGGCCGACCAGGTCGCCAAGGAGATCCGCCGGCTGGCC
CGCGCCGCCGACAACATCAAGGTCCTGACCCTCTGCGGCGGCGTCCCCTACGGCCCGCAGGTGGCTTCGCTG
GAGCACGGCGCGCACGTGGTGGTCGGCACCCCGGGGCGCATCCAGGAGCACCTGCGCAAGGGCACCCTGGTC
CTCGACGGGCTCAATACCCTGGTCCTCGACGAAGCCGACCGGATGCTCGACATGGGCTTCTACGACAGCATC
GCCGAGATCATCGGCCAGCTCCCCGAGCGCCGGCAGACCCTGCTGTTCTCCGCCACCTACCCGGACGGCATC
GAGAAGCTGGCGAAGACCTTCATGCGCGATCCGCGACAGGTGAAGGTCGAGTCGCTGCACGCCGACAGCCAG
ATCGAGCAGCGCTTCTTCGAGATCGATCCGAAGCAGCGCATGGACGCCGTGGTACGCCTGCTCCAGCATTTC
CGGCCGCAGTCCTGCGTGGCCTTCTGCCAGACCCGCCAGCAGTGCCAGGAGCTGGCCGACGCACTGAAGGCG
CAGCGGATTTCCGCCCTGGCCCTGCACGGCGACCTGGAGCAGCGCGAGCGCGACCAGGTCCTGACGGTGTTC
GCCAACCGCAGTTGCAACGTACTGGTGGCCACCGACGTGGCCGCCCGCGGGCTGGACATCGCCGCCCTGGAA
ACGGTGATCAACGTCGAGCTGGCGCGCGACCCGGAGGTCCACATCCATCGCATCGGACGCAGCGGTCGCGCC
GGCGAGAAAGGCCTGGCCCTGTCGCTGGTGGCGCCGGCCGAGGCCAGCCGTGCGCAGGCCATCGAGGACCTG
CAGAAGCAGCCGCTGGCCTGGTACGCCCTCGGCCAGTTGAAGGCCAGCCCGGAGCCATTGCTGCCGCCGATG
AGCACCCTGTGCATCGCCGGCGGACGCAAGGACAAGGTGCGCCCCGGCGACCTGCTCGGTGCCCTCACCGGC
GACGCCGGGCTGCCCGGCAGCGCGGTGGGCAAGATCGCCATCTTCGACTTCCAGGCCTTCGTCGCCATCGAG
CGCGGCCTCGCCCACCAGGCCCTCAAGCGCCTGAGCGAAGGCAAGATCAAGGGGCGCTCGTTCAAGGTCCGC
CTGCTGTAG |
Translation:
MTSTAFSSLPLSADLLANLDSLGYREMTPIQAQSLPLILQGHDLIAQAKTGSGKTAAFGLALLSPLNPRYFG
CQALVLCPTRELADQVAKEIRRLARAADNIKVLTLCGGVPYGPQVASLEHGAHVVVGTPGRIQEHLRKGTLV
LDGLNTLVLDEADRMLDMGFYDSIAEIIGQLPERRQTLLFSATYPDGIEKLAKTFMRDPRQVKVESLHADSQ
IEQRFFEIDPKQRMDAVVRLLQHFRPQSCVAFCQTRQQCQELADALKAQRISALALHGDLEQRERDQVLTVF
ANRSCNVLVATDVAARGLDIAALETVINVELARDPEVHIHRIGRSGRAGEKGLALSLVAPAEASRAQAIEDL
QKQPLAWYALGQLKASPEPLLPPMSTLCIAGGRKDKVRPGDLLGALTGDAGLPGSAVGKIAIFDFQAFVAIE
RGLAHQALKRLSEGKIKGRSFKVRLL* |
AnnotationID:1108 | GeneID:1099 |
|
Modification Date/Time: |
2005-03-25 13:01:11 |
|
|
|
GeneProduct: | RNA helicase DbpA |
|
|
|
Cell Localization Confidence Code: | 5 |
|
|
Functional Category: | (24) Transcription, RNA processing and degradation |
|
Alternate Gene Product Name: | |
|
Functional Category Confidence Code: | 5 |
|
|
Secondary Functional Category(ies): | |
|
|
|
|
Homology: | >gb|AAN70519.1|AE016694_2 (AE016792) ATP-dependent RNA helicase DbpA [Pseudomonas putida
KT2440]
Length = 461
Score = 696 bits (1797), Expect = 0.0
Identities = 347/457 (75%), Positives = 402/457 (87%), Gaps = 1/457 (0%)
>gb|AAO58435.1| (AE016874) ATP-independent RNA helicase DbpA [Pseudomonas syringae
pv. tomato str. DC3000]
Length = 459
Score = 685 bits (1768), Expect = 0.0
Identities = 340/459 (74%), Positives = 405/459 (88%), Gaps = 1/459 (0%)
>emb|CAD14152.1| (AL646060) PROBABLE ATP-DEPENDENT RNA HELICASE PROTEIN [Ralstonia
solanacearum]
Length = 465
Score = 581 bits (1498), Expect = e-165
Identities = 294/458 (64%), Positives = 356/458 (77%), Gaps = 1/458 (0%) |
|
Structural Features: | cd00268, DEADc, DEAD-box helicases.
CD-Length = 203 residues, 100.0% aligned
Score = 254 bits (651), Expect = 1e-68
Identities = 101/204 (49%), Positives = 139/204 (68%), Gaps = 3/204 (1%) |
|
|
|
|
|