ViewGene

Locus Name:
GeneID:
Location:

GeneID:1099
TrivialName: PA14_05950
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_05950
PAO1 Ortholog Locus:PA0455
Sequence Length:1377
Protein Length:458
Start: 527706
Stop: 526330
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG03844.1|AE004483_2 (AE004483) RNA helicase DbpA [Pseudomonas aeruginosa PAO1]
Identities = 457/458 (99%), Positives = 458/458 (100%)
Sequence:
GTGACCTCCACCGCTTTCTCCTCGCTGCCGCTTTCCGCGGACCTCCTGGCCAATCTCGACTCCCTCGGTTAC
CGGGAGATGACGCCGATCCAGGCGCAGAGCCTGCCGCTGATCCTCCAGGGCCACGACCTGATCGCCCAGGCC
AAGACCGGCAGCGGCAAGACCGCGGCTTTCGGCCTCGCCCTGCTCAGCCCGCTGAACCCGCGCTACTTCGGC
TGCCAGGCGCTGGTGCTGTGCCCGACCCGCGAACTGGCCGACCAGGTCGCCAAGGAGATCCGCCGGCTGGCC
CGCGCCGCCGACAACATCAAGGTCCTGACCCTCTGCGGCGGCGTCCCCTACGGCCCGCAGGTGGCTTCGCTG
GAGCACGGCGCGCACGTGGTGGTCGGCACCCCGGGGCGCATCCAGGAGCACCTGCGCAAGGGCACCCTGGTC
CTCGACGGGCTCAATACCCTGGTCCTCGACGAAGCCGACCGGATGCTCGACATGGGCTTCTACGACAGCATC
GCCGAGATCATCGGCCAGCTCCCCGAGCGCCGGCAGACCCTGCTGTTCTCCGCCACCTACCCGGACGGCATC
GAGAAGCTGGCGAAGACCTTCATGCGCGATCCGCGACAGGTGAAGGTCGAGTCGCTGCACGCCGACAGCCAG
ATCGAGCAGCGCTTCTTCGAGATCGATCCGAAGCAGCGCATGGACGCCGTGGTACGCCTGCTCCAGCATTTC
CGGCCGCAGTCCTGCGTGGCCTTCTGCCAGACCCGCCAGCAGTGCCAGGAGCTGGCCGACGCACTGAAGGCG
CAGCGGATTTCCGCCCTGGCCCTGCACGGCGACCTGGAGCAGCGCGAGCGCGACCAGGTCCTGACGGTGTTC
GCCAACCGCAGTTGCAACGTACTGGTGGCCACCGACGTGGCCGCCCGCGGGCTGGACATCGCCGCCCTGGAA
ACGGTGATCAACGTCGAGCTGGCGCGCGACCCGGAGGTCCACATCCATCGCATCGGACGCAGCGGTCGCGCC
GGCGAGAAAGGCCTGGCCCTGTCGCTGGTGGCGCCGGCCGAGGCCAGCCGTGCGCAGGCCATCGAGGACCTG
CAGAAGCAGCCGCTGGCCTGGTACGCCCTCGGCCAGTTGAAGGCCAGCCCGGAGCCATTGCTGCCGCCGATG
AGCACCCTGTGCATCGCCGGCGGACGCAAGGACAAGGTGCGCCCCGGCGACCTGCTCGGTGCCCTCACCGGC
GACGCCGGGCTGCCCGGCAGCGCGGTGGGCAAGATCGCCATCTTCGACTTCCAGGCCTTCGTCGCCATCGAG
CGCGGCCTCGCCCACCAGGCCCTCAAGCGCCTGAGCGAAGGCAAGATCAAGGGGCGCTCGTTCAAGGTCCGC
CTGCTGTAG
Translation:
MTSTAFSSLPLSADLLANLDSLGYREMTPIQAQSLPLILQGHDLIAQAKTGSGKTAAFGLALLSPLNPRYFG
CQALVLCPTRELADQVAKEIRRLARAADNIKVLTLCGGVPYGPQVASLEHGAHVVVGTPGRIQEHLRKGTLV
LDGLNTLVLDEADRMLDMGFYDSIAEIIGQLPERRQTLLFSATYPDGIEKLAKTFMRDPRQVKVESLHADSQ
IEQRFFEIDPKQRMDAVVRLLQHFRPQSCVAFCQTRQQCQELADALKAQRISALALHGDLEQRERDQVLTVF
ANRSCNVLVATDVAARGLDIAALETVINVELARDPEVHIHRIGRSGRAGEKGLALSLVAPAEASRAQAIEDL
QKQPLAWYALGQLKASPEPLLPPMSTLCIAGGRKDKVRPGDLLGALTGDAGLPGSAVGKIAIFDFQAFVAIE
RGLAHQALKRLSEGKIKGRSFKVRLL*
AnnotationID:1108GeneID:1099
AnnotatorUID: diggins
Modification Date/Time: 2005-03-25 13:01:11
Gene Name:dbpA
Confidence Code:2
GeneProduct: RNA helicase DbpA
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(24) Transcription, RNA processing and degradation
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:cd00268
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:
Homology:
>gb|AAN70519.1|AE016694_2 (AE016792) ATP-dependent RNA helicase DbpA [Pseudomonas putida
           KT2440]
          Length = 461

 Score =  696 bits (1797), Expect = 0.0
 Identities = 347/457 (75%), Positives = 402/457 (87%), Gaps = 1/457 (0%)

>gb|AAO58435.1| (AE016874) ATP-independent RNA helicase DbpA [Pseudomonas syringae
           pv. tomato str. DC3000]
          Length = 459

 Score =  685 bits (1768), Expect = 0.0
 Identities = 340/459 (74%), Positives = 405/459 (88%), Gaps = 1/459 (0%)

>emb|CAD14152.1| (AL646060) PROBABLE ATP-DEPENDENT RNA HELICASE PROTEIN [Ralstonia
           solanacearum]
          Length = 465

 Score =  581 bits (1498), Expect = e-165
 Identities = 294/458 (64%), Positives = 356/458 (77%), Gaps = 1/458 (0%)
Structural Features:
cd00268, DEADc, DEAD-box helicases. 
CD-Length = 203 residues, 100.0% aligned
Score =  254 bits (651), Expect = 1e-68
Identities = 101/204 (49%), Positives = 139/204 (68%), Gaps = 3/204 (1%)
Genomic Context:
Comment:
ReferenceID:14279
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:19343
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
ReferenceID:35343
Author/Investigator(s): Iggo R, Picksley S, Southgate J, McPheat J, Lane DP.
Title: Identification of a putative RNA helicase in E.coli.
PubMed: 2216714
MedLine:
Source:
Nucleic Acids Res. 1990 Sep 25;18(18):5413-7.
Reference Type:Journal
Data:
URL:http://www.pubmedcentral.nih.gov/articlerender.fcgi?tool=pubmed&pubmedid=2216714
ReferenceID:38075
Author/Investigator(s):
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:Misc (text/plain)
Data:1099_cdd.html
URL:
Homologs By Global Alignment
Gene ID:1099

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
1979 PA0455_tr translation of PA0455 458 99.78 99.99 0 2301.0
67549 gb|AAG03844.1|AE004483_2 (AE004483) RNA helicase DbpA [Pseudomonas aeruginosa PAO1] 458 99.56 99.99 0 2298.0
67550 gb|AAN70519.1|AE016694_2 (AE016792) ATP-dependent RNA helicase DbpA [Pseudomonas putida KT2440] 461 75.27 87.20 3 1798.0
67551 gb|AAO58435.1| (AE016874) ATP-independent RNA helicase DbpA [Pseudomonas syringae pv. tomato str. DC3000] 459 73.85 88.23 1 1766.0
67556 emb|CAE39177.1| (BX640435) probable ATP-dependent RNA helicase [Bordetella parapertussis] 462 63.63 74.45 4 1438.0
GC ORFID: 44101How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA0455Glimmer Score:
Start: 6329048Stop: 6327672
Length: 1377
Start Codon: GTGTruncated Start:
Stop Codon: TAGTruncated Stop:
Homolog: t_PA0455 translation of PA0455Homolog Bit Score 890.0
Other Homologs: psyr_15may02_Scaffold4_revised_gene5383 (ORF: BLASTX 265.0), t_PA3950 (ORF: BLASTX 254.0), t_PA0455 (ORF: GLIMMER)
GC ORF Sequence
GTGACCTCCACCGCTTTCTCCTCGCTGCCGCTTTCCGCGGACCTCCTGGCCAATCTCGACTCCCTCGGTTAC
CGGGAGATGACGCCGATCCAGGCGCAGAGCCTGCCGCTGATCCTCCAGGGCCACGACCTGATCGCCCAGGCC
AAGACCGGCAGCGGCAAGACCGCGGCTTTCGGCCTCGCCCTGCTCAGCCCGCTGAACCCGCGCTACTTCGGC
TGCCAGGCGCTGGTGCTGTGCCCGACCCGCGAACTGGCCGACCAGGTCGCCAAGGAGATCCGCCGGCTGGCC
CGCGCCGCCGACAACATCAAGGTCCTGACCCTCTGCGGCGGCGTCCCCTACGGCCCGCAGGTGGCTTCGCTG
GAGCACGGCGCGCACGTGGTGGTCGGCACCCCGGGGCGCATCCAGGAGCACCTGCGCAAGGGCACCCTGGTC
CTCGACGGGCTCAATACCCTGGTCCTCGACGAAGCCGACCGGATGCTCGACATGGGCTTCTACGACAGCATC
GCCGAGATCATCGGCCAGCTCCCCGAGCGCCGGCAGACCCTGCTGTTCTCCGCCACCTACCCGGACGGCATC
GAGAAGCTGGCGAAGACCTTCATGCGCGATCCGCGACAGGTGAAGGTCGAGTCGCTGCACGCCGACAGCCAG
ATCGAGCAGCGCTTCTTCGAGATCGATCCGAAGCAGCGCATGGACGCCGTGGTACGCCTGCTCCAGCATTTC
CGGCCGCAGTCCTGCGTGGCCTTCTGCCAGACCCGCCAGCAGTGCCAGGAGCTGGCCGACGCACTGAAGGCG
CAGCGGATTTCCGCCCTGGCCCTGCACGGCGACCTGGAGCAGCGCGAGCGCGACCAGGTCCTGACGGTGTTC
GCCAACCGCAGTTGCAACGTACTGGTGGCCACCGACGTGGCCGCCCGCGGGCTGGACATCGCCGCCCTGGAA
ACGGTGATCAACGTCGAGCTGGCGCGCGACCCGGAGGTCCACATCCATCGCATCGGACGCAGCGGTCGCGCC
GGCGAGAAAGGCCTGGCCCTGTCGCTGGTGGCGCCGGCCGAGGCCAGCCGTGCGCAGGCCATCGAGGACCTG
CAGAAGCAGCCGCTGGCCTGGTACGCCCTCGGCCAGTTGAAGGCCAGCCCGGAGCCATTGCTGCCGCCGATG
AGCACCCTGTGCATCGCCGGCGGACGCAAGGACAAGGTGCGCCCCGGCGACCTGCTCGGTGCCCTCACCGGC
GACGCCGGGCTGCCCGGCAGCGCGGTGGGCAAGATCGCCATCTTCGACTTCCAGGCCTTCGTCGCCATCGAG
CGCGGCCTCGCCCACCAGGCCCTCAAGCGCCTGAGCGAAGGCAAGATCAAGGGGCGCTCGTTCAAGGTCCGC
CTGCTGTAG