ViewGene
Locus Name:
GeneID:
Location:

GeneID:1098
TrivialName: PA14_04510
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_04510
PAO1 Ortholog Locus:PA0344
Sequence Length:1380
Protein Length:459
Start: 401937
Stop: 400558
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG03733.1|AE004472_5 (AE004472) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 457/459 (99%), Positives = 458/459 (99%)
Sequence:
ATGACTGAGCCGCTGATCCTGGCCGTGGTCGGCCACACCAATACCGGCAAGACCTCGCTGCTGCGCACCCTG
ACCCGCGACCGCGGATTCGGCGAAGTCTCCCATCGCCCCAGCACCACCCGCCACGTCGAGGGCGCCAGGCTG
TCGGTGGACGGCGAAGCGCTGCTGGAACTCTACGACACGCCCGGCCTGGAAGACGCCATCGCCCTGCTTGAC
TACCTGGACGCCCTGGAGCGCCCCGGCGAGCGTCTCGATGGCCCGGAACGCATGGCGCGGTTGCTGGACAGC
AACGAAGCGCGCGGGCGTTTCGAACAGGAAGCCAAGGTGGTCCGCCAGTTGCTCGCCTCCGATGCCGGGCTC
TACGTGATCGACGCCCGCGAACCGGTGCTGGCCAAGTATCGCGACGAACTGGCGGTGCTTGCCGGCTGCGGC
CGGCCGCTGCTGCCGGTGCTGAACTTCGTCGCCAGCCCGCAGCATCGCGAGGAGGAGTGGCGCGCCGCCCTC
GCTCGCCTGGGCCTGCACGCCCTGGTGCGTTTCGACAGCGTGGCGCCGCCGCTGGACGGCGAACGGCGCCTC
TACGAGAGCCTGGCGCTGCTGCTGGAGCGCGCCCGGCCGCAACTCGACCGGCTGATCGCCGACCATGAGACC
CAGGCCGCCGCGCGCCTGCGCGCCGGGCAACGGCTGATCGCCGAATTGCTGGTCGACGTCGCCGCCTGCCGG
CGCCTGGTGCCCGGCGGCGAAAGCGCCGTGCAGGAAGCCACCCGCGACCTGCACCAGCAGGTGCGCAAGCGC
GAGCAGGCCTGCGTGGAAGCGCTGCTGCGGCTCTACGCCTTCGCCAGGGACGACGCCCGCGCCGCCGACCTG
CCGCTGCTCGACGGCCGCTGGGGCGACGATCTGTTCAATCCGGAGACCCTGCGCCAACTCGGTATCCGCCTC
GGCGGCGGGGTTGCGGCCGGTGCCGCGGCCGGCGCCGGCATCGACCTGCTGGTGGGCGGCGTCACCCTTGGC
GCCGCCGCCGCCCTCGGCGCCCTCGCTGGCGGCGCCTGGCAGACCGTCGGGCACTACGGTTCGCGCCTGCTC
GGCAAGCTCAAGGGCGCCCGCGAGCTGACCGTCAACGACGCCGTGCTGCGCTTGCTTGCGCTGCGCCAACGG
CAGCTCCTGGCAGCCCTGCAAACGCGCGGCCACGCGGCGATCGAGGCGATCCGCCTGGAGACCCCGGAGGAC
AAGCAGTGGCGCGAAGGCAAGCTGCCGGAAGCACTGCGCAAGGCGCGCGCGCATCCGGAGTGGTCGTCGCTG
AACGGCAGGCGGGTGGGCGGCAGCGACCGCCAGGAACAGATCGACGCGCTGGCCGAATTGCTGGAGAGCGGA
CGCGGGGAATGA
Translation:
MTEPLILAVVGHTNTGKTSLLRTLTRDRGFGEVSHRPSTTRHVEGARLSVDGEALLELYDTPGLEDAIALLD
YLDALERPGERLDGPERMARLLDSNEARGRFEQEAKVVRQLLASDAGLYVIDAREPVLAKYRDELAVLAGCG
RPLLPVLNFVASPQHREEEWRAALARLGLHALVRFDSVAPPLDGERRLYESLALLLERARPQLDRLIADHET
QAAARLRAGQRLIAELLVDVAACRRLVPGGESAVQEATRDLHQQVRKREQACVEALLRLYAFARDDARAADL
PLLDGRWGDDLFNPETLRQLGIRLGGGVAAGAAAGAGIDLLVGGVTLGAAAALGALAGGAWQTVGHYGSRLL
GKLKGARELTVNDAVLRLLALRQRQLLAALQTRGHAAIEAIRLETPEDKQWREGKLPEALRKARAHPEWSSL
NGRRVGGSDRQEQIDALAELLESGRGE*
AnnotationID:1107GeneID:1098
AnnotatorUID: diggins
Modification Date/Time: 2005-03-24 18:06:37
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:PA0344
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:






   
Genomic Context:






   
Comment:


















    ReferenceID:2199




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:19341




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:33684




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:1098_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:1098
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
1978
                           PA0344_tr
                           translation of PA0344
                           459
                           99.56
                           99.78
                           0
                           2301.0
     

     
     
67540
                           gb|AAG03733.1|AE004472_5
                           (AE004472) hypothetical protein PA0344 [Pseudomonas aeruginosa PAO1]
                           459
                           99.56
                           99.78
                           0
                           2301.0
     

     
     
67541
                           gb|AAN70699.1|AE016713_5
                           (AE016793) conserved hypothetical protein [Pseudomonas putida KT2440]
                           462
                           74.89
                           83.11
                           9
                           1729.0
     

     
     
67542
                           gb|AAO53983.1|
                           (AE016857) conserved hypothetical protein [Pseudomonas syringae pv. tomato str. DC3000]
                           465
                           72.04
                           81.50
                           9
                           1657.0
     

     
     
67543
                           emb|CAE35271.1|
                           (BX640451) conserved hypothetical protein [Bordetella bronchiseptica] [Bordetella bronchiseptica RB50]
                           461
                           57.91
                           74.18
                           3
                           1342.0
     

     






      

          
GC ORFID: 44100How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA0344Glimmer Score: 

          
Start: 6203279Stop: 6201900

          
Length: 1380


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA0344 translation of PA0344Homolog Bit Score 890.0

          
Other Homologs:  psyr_15may02_Scaffold6_revised_gene6623 (ORF: BLASTX 645.0), t_PA0344 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGACTGAGCCGCTGATCCTGGCCGTGGTCGGCCACACCAATACCGGCAAGACCTCGCTGCTGCGCACCCTG 
ACCCGCGACCGCGGATTCGGCGAAGTCTCCCATCGCCCCAGCACCACCCGCCACGTCGAGGGCGCCAGGCTG 
TCGGTGGACGGCGAAGCGCTGCTGGAACTCTACGACACGCCCGGCCTGGAAGACGCCATCGCCCTGCTTGAC 
TACCTGGACGCCCTGGAGCGCCCCGGCGAGCGTCTCGATGGCCCGGAACGCATGGCGCGGTTGCTGGACAGC 
AACGAAGCGCGCGGGCGTTTCGAACAGGAAGCCAAGGTGGTCCGCCAGTTGCTCGCCTCCGATGCCGGGCTC 
TACGTGATCGACGCCCGCGAACCGGTGCTGGCCAAGTATCGCGACGAACTGGCGGTGCTTGCCGGCTGCGGC 
CGGCCGCTGCTGCCGGTGCTGAACTTCGTCGCCAGCCCGCAGCATCGCGAGGAGGAGTGGCGCGCCGCCCTC 
GCTCGCCTGGGCCTGCACGCCCTGGTGCGTTTCGACAGCGTGGCGCCGCCGCTGGACGGCGAACGGCGCCTC 
TACGAGAGCCTGGCGCTGCTGCTGGAGCGCGCCCGGCCGCAACTCGACCGGCTGATCGCCGACCATGAGACC 
CAGGCCGCCGCGCGCCTGCGCGCCGGGCAACGGCTGATCGCCGAATTGCTGGTCGACGTCGCCGCCTGCCGG 
CGCCTGGTGCCCGGCGGCGAAAGCGCCGTGCAGGAAGCCACCCGCGACCTGCACCAGCAGGTGCGCAAGCGC 
GAGCAGGCCTGCGTGGAAGCGCTGCTGCGGCTCTACGCCTTCGCCAGGGACGACGCCCGCGCCGCCGACCTG 
CCGCTGCTCGACGGCCGCTGGGGCGACGATCTGTTCAATCCGGAGACCCTGCGCCAACTCGGTATCCGCCTC 
GGCGGCGGGGTTGCGGCCGGTGCCGCGGCCGGCGCCGGCATCGACCTGCTGGTGGGCGGCGTCACCCTTGGC 
GCCGCCGCCGCCCTCGGCGCCCTCGCTGGCGGCGCCTGGCAGACCGTCGGGCACTACGGTTCGCGCCTGCTC 
GGCAAGCTCAAGGGCGCCCGCGAGCTGACCGTCAACGACGCCGTGCTGCGCTTGCTTGCGCTGCGCCAACGG 
CAGCTCCTGGCAGCCCTGCAAACGCGCGGCCACGCGGCGATCGAGGCGATCCGCCTGGAGACCCCGGAGGAC 
AAGCAGTGGCGCGAAGGCAAGCTGCCGGAAGCACTGCGCAAGGCGCGCGCGCATCCGGAGTGGTCGTCGCTG 
AACGGCAGGCGGGTGGGCGGCAGCGACCGCCAGGAACAGATCGACGCGCTGGCCGAATTGCTGGAGAGCGGA 
CGCGGGGAATGA