ViewGene
Locus Name:
GeneID:
Location:

GeneID:1097
TrivialName: PA14_71410
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_71410
PAO1 Ortholog Locus:PA5410
Sequence Length:1290
Protein Length:429
Start: 6359599
Stop: 6358310
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG08795.1|AE004953_9 (AE004953) probable ring hydroxylating dioxygenase, alpha-subunit [Pseudomonas aeruginosa PAO1]
Identities = 428/429 (99%), Positives = 429/429 (100%)
Sequence:
ATGGACGTCACTTCCACCCTGAGTCTCGGCGATCCCCTGGAACCGGCCCGCAAGGCCACCGCCGACATGCTG
CGCAGCCGCGACCACAGCTTCTCGCTGCCGCAGCCCTTCTACTGCGACCAGCGCCTGTTCGAGATCGACATG
CAGGAGATCTTCCACAAGGAATGGCTGATCGCCGGCATGACCTGCGAGATTCCCGCCAAGGGCAATTTCCTC
ACCCTGCAGATCGGCAAGAACCCGGTCCTGGTGATCCGTGGCGCCGAAGGCCAGGTGCATGCCTTCCACAAT
GTCTGCCGGCACCGCGGCTCGCGCCTGTGCGTGAGCGAGAAGGGCAAGGTGGCCAAGCTGGTCTGCCCCTAC
CACCAGTGGACCTACGAGCTGGATGGCCGCCTGCTGTTCGCCGGCACCGAGATGGGCGCCGACTTCGACATG
AAGGAGTACGGCCTGAAGCCGATCCAGGTGAAGACCGCCGGCGGCTACATCTTCATCAGTCTGGCGGAGAAC
CCGCCGGCCATCGACGACTTCCTGGCGACGCTCGAGCACTACATGGAGCCGTACGACATGGAGAACGCCAAG
GTGGCGGTGCAGACCACCATCCGCGAAGCCGCCAACTGGAAGCTGGTGATCGAGAACAACCGCGAGTGCTAC
CACTGCAACGGCTCCCACCCGGAACTGCTGAAGACCCTGCTGGAGTGGGACGACGTCACCGACCCGCGCGCC
AGCCAGGCGTTCAAGGACCAGGTGGCGGCCTGCACCAGCGCCTGGGAGGCCGAGAAGATCCCGTACGCCCAC
GCCAGCTTCGGCCTGCGCAATCGCATCGTGCGCATGCCGCTGCTGGACGGCACCGTGTCGATGACCATGGAC
GGCAAGCAGGGCAGCAAGAAGCTCATGGGCCGGATCAAGAACCCCGACCTCGGCTCGATGCGCATCCTGCAC
CTGCCGCACTCCTGGAACCACTGCATGGGCGACCACCTGATCGTCTTCACCGTGTGGCCGATCAGCGCCCAG
GAAACCCTGGTCACCACCAAATGGCTGGTACACAAGGACGCGGTGGAAGGCGTCGACTACGACGTGGCGCGC
CTGCGCGAGGTATGGGACGCGACCAACGACCAGGATCGCCGGCTGGCCGAGGAGAACCAGCGCGGGATCAAC
TCCGACGCCTACCAGCCTGGTCCATACTCGAAGACCTACGAGTTCGGCGTGATCAATTTCCTCGACTGGTAC
AGCGAGCGCATGCTGAACAACCTCGGCGAGGAGTCCGCCCACGTGCGCAAGGTGGCCGGCAGCTGA
Translation:
MDVTSTLSLGDPLEPARKATADMLRSRDHSFSLPQPFYCDQRLFEIDMQEIFHKEWLIAGMTCEIPAKGNFL
TLQIGKNPVLVIRGAEGQVHAFHNVCRHRGSRLCVSEKGKVAKLVCPYHQWTYELDGRLLFAGTEMGADFDM
KEYGLKPIQVKTAGGYIFISLAENPPAIDDFLATLEHYMEPYDMENAKVAVQTTIREAANWKLVIENNRECY
HCNGSHPELLKTLLEWDDVTDPRASQAFKDQVAACTSAWEAEKIPYAHASFGLRNRIVRMPLLDGTVSMTMD
GKQGSKKLMGRIKNPDLGSMRILHLPHSWNHCMGDHLIVFTVWPISAQETLVTTKWLVHKDAVEGVDYDVAR
LREVWDATNDQDRRLAEENQRGINSDAYQPGPYSKTYEFGVINFLDWYSERMLNNLGEESAHVRKVAGS*
AnnotationID:1106GeneID:1097
AnnotatorUID: diggins
Modification Date/Time: 2005-03-17 11:11:49
Gene Name:
Confidence Code:3
GeneProduct:putative ring hydroxylating dioxygenase, alpha-subunit
Cell Localization:()
Synonyms:PA5410
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(27) Transport of small molecules
Alternate Gene Product Name:putative iron-sulfur cluster-binding protein
Functional Category Confidence Code:5
COGs:COG4638
Secondary Functional Category(ies):carbon compond metabolism
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAN65946.1|AE016222_8 (AE016775) Rieske 2Fe-2S family protein [Pseudomonas putida KT2440]
          Length = 430

 Score =  780 bits (2015), Expect = 0.0
 Identities = 362/421 (85%), Positives = 394/421 (93%)

>gb|AAO53945.1| (AE016857) iron-sulfur cluster-binding protein, Rieske family
           [Pseudomonas syringae pv. tomato str. DC3000]
          Length = 410

 Score =  739 bits (1909), Expect = 0.0
 Identities = 342/399 (85%), Positives = 373/399 (93%)






 
Structural Features:
COG4638, HcaE, Phenylpropionate dioxygenase and related ring-hydroxylating dioxygenases, 
large terminal subunit 
[Inorganic ion transport and metabolism]
CD-Length = 367 residues,  97.3% aligned
Score =  285 bits (731), Expect = 5e-78
Identities = 135/387 (34%), Positives = 179/387 (46%), Gaps = 32/387 (8%)






   
Genomic Context:






   
Comment:


















    ReferenceID:2197




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:19339




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:34695




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:1097_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:1097
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
1977
                           PA5410_tr
                           translation of PA5410
                           429
                           99.76
                           99.99
                           0
                           2301.0
     

     
     
67528
                           gb|AAG08795.1|AE004953_9
                           (AE004953) probable ring hydroxylating dioxygenase, alpha-subunit [Pseudomonas aeruginosa PAO1]
                           429
                           99.76
                           99.99
                           0
                           2301.0
     

     
     
67529
                           gb|AAN65946.1|AE016222_8
                           (AE016775) Rieske 2Fe-2S family protein [Pseudomonas putida KT2440]
                           430
                           84.41
                           92.79
                           1
                           2014.0
     

     
     
67530
                           gb|AAO53945.1|
                           (AE016857) iron-sulfur cluster-binding protein, Rieske family [Pseudomonas syringae pv. tomato str. DC3000]
                           432
                           79.62
                           87.73
                           25
                           1908.0
     

     
     
67532
                           gb|AAL51730.1|
                           (AE009496) BENZOATE 1,2-DIOXYGENASE ALPHA SUBUNIT [Brucella melitensis 16M]
                           448
                           47.54
                           62.27
                           52
                           1071.0
     

     






      

          
GC ORFID: 44099How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA5410Glimmer Score: 

          
Start: 5623288Stop: 5621999

          
Length: 1290


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA5410 translation of PA5410Homolog Bit Score 890.0

          
Other Homologs:  psyr_15may02_Scaffold9_revised_gene8153 (ORF: BLASTX 778.0), t_PA5410 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGGACGTCACTTCCACCCTGAGTCTCGGCGATCCCCTGGAACCGGCCCGCAAGGCCACCGCCGACATGCTG 
CGCAGCCGCGACCACAGCTTCTCGCTGCCGCAGCCCTTCTACTGCGACCAGCGCCTGTTCGAGATCGACATG 
CAGGAGATCTTCCACAAGGAATGGCTGATCGCCGGCATGACCTGCGAGATTCCCGCCAAGGGCAATTTCCTC 
ACCCTGCAGATCGGCAAGAACCCGGTCCTGGTGATCCGTGGCGCCGAAGGCCAGGTGCATGCCTTCCACAAT 
GTCTGCCGGCACCGCGGCTCGCGCCTGTGCGTGAGCGAGAAGGGCAAGGTGGCCAAGCTGGTCTGCCCCTAC 
CACCAGTGGACCTACGAGCTGGATGGCCGCCTGCTGTTCGCCGGCACCGAGATGGGCGCCGACTTCGACATG 
AAGGAGTACGGCCTGAAGCCGATCCAGGTGAAGACCGCCGGCGGCTACATCTTCATCAGTCTGGCGGAGAAC 
CCGCCGGCCATCGACGACTTCCTGGCGACGCTCGAGCACTACATGGAGCCGTACGACATGGAGAACGCCAAG 
GTGGCGGTGCAGACCACCATCCGCGAAGCCGCCAACTGGAAGCTGGTGATCGAGAACAACCGCGAGTGCTAC 
CACTGCAACGGCTCCCACCCGGAACTGCTGAAGACCCTGCTGGAGTGGGACGACGTCACCGACCCGCGCGCC 
AGCCAGGCGTTCAAGGACCAGGTGGCGGCCTGCACCAGCGCCTGGGAGGCCGAGAAGATCCCGTACGCCCAC 
GCCAGCTTCGGCCTGCGCAATCGCATCGTGCGCATGCCGCTGCTGGACGGCACCGTGTCGATGACCATGGAC 
GGCAAGCAGGGCAGCAAGAAGCTCATGGGCCGGATCAAGAACCCCGACCTCGGCTCGATGCGCATCCTGCAC 
CTGCCGCACTCCTGGAACCACTGCATGGGCGACCACCTGATCGTCTTCACCGTGTGGCCGATCAGCGCCCAG 
GAAACCCTGGTCACCACCAAATGGCTGGTACACAAGGACGCGGTGGAAGGCGTCGACTACGACGTGGCGCGC 
CTGCGCGAGGTATGGGACGCGACCAACGACCAGGATCGCCGGCTGGCCGAGGAGAACCAGCGCGGGATCAAC 
TCCGACGCCTACCAGCCTGGTCCATACTCGAAGACCTACGAGTTCGGCGTGATCAATTTCCTCGACTGGTAC 
AGCGAGCGCATGCTGAACAACCTCGGCGAGGAGTCCGCCCACGTGCGCAAGGTGGCCGGCAGCTGA