ViewGene
Locus Name:
GeneID:
Location:

GeneID:1096
TrivialName: PA14_70160
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_70160
PAO1 Ortholog Locus:PA5313
Sequence Length:1335
Protein Length:444
Start: 6257067
Stop: 6258401
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG08698.1|AE004944_2 (AE004944) probable pyridoxal-dependent aminotransferase [Pseudomonas aeruginosa PAO1]
Identities = 440/444 (99%), Positives = 441/444 (99%)
Sequence:
ATGACAATGAATAACGAGCCGCAGTCGAGCAGCCTCGACAACTTCTGGATGCCCTTCACCGCCAACCGCCAG
TTCAAGGCGCGGCCGCGCCTGCTGGAAAGCGCCGAAGGCATCCACTATATCGCCCAGGGCGGGCGCCGCATC
CTCGACGGCACCGCCGGCCTCTGGTGCTGCAATGCCGGCCACGGCCGGCGCGAGATCAGCGAAGCGGTGGCC
CGGCAGATCGCCACCCTCGACTACGCCCCGCCGTTCCAGATGGGTCACCCGCTGCCGTTCGAACTCGCCGCG
CGGCTGGCGGAAATCGCCCCGCCGGGCCTGAACAAAGTGTTCTTCACCAACTCCGGCTCGGAATCGGCGGAC
ACCGCGCTGAAGATCGCCCTTGCCTACCAGCGCGCCATCGGCCAGGGCACCCGCACCCGCCTGATCGGCCGC
GAACTGGGCTACCACGGGGTCGGCTTCGGCGGCCTGTCGGTAGGCGGCATGGTCAACAACCGCAAGGCCTTC
TCCGCCAACCTGCTGCCGGGGGTCGACCACCTGCCGCACACCCTGGACGTCGCCCGCAACGCCTTCACCGTC
GGCCTGCCCGAGCATGGTGCGGAAAAGGCCGAGGAGCTGGAACGCCTGGTGACCCTGCACGGCGCCGAGAAT
ATCGCCGCGGTGATCGTCGAGCCGATGTCCGGCTCGGCCGGCGTGGTGCTGCCGCCCAAGGGCTACCTTCAG
CGGCTGCGCGAGATCACCCGCAAGCATGGCATCCTGCTGATCTTCGACGAAGTGATCACCGGTTTCGGCCGC
GTCGGCGAAGCCTTCGCCGCGCAGCGCTGGGGCGTCGTCCCGGACCTGTTGACCTGCGCCAAGGGGCTGACC
AACGGCAGCATCCCGATGGGCGCCGTATTCGTCGACGAGAAGATCCACGCCGCCTTCATGCAAGGCCCGCAG
GGCGCCATCGAGTTCTTCCACGGCTATACCTATTCCGGCCACCCGGTAGCCTGCGCCGCCGCCCTGGCGACC
CTGGACATCTACCGTCGCGACGACCTGTTCCAGCGGGCCGTCGAACTGGAAGGCTACTGGCAGGACGCGCTG
TTCAGCCTGCGCGACCTGCCCAACGTGGTCGACATCCGCGCCGTCGGCCTGGTCGGCGGCGTGCAACTGGCG
CCGCACGCGGACGGCCCCGGCAAGCGCGGCTACGACGTCTTCGAGCGCTGCTTCTGGGAGCACGACCTGATG
GTCCGGGTGACCGGCGACATCATCGCCATGTCGCCGCCGCTGATCATCGACAAGCCCCACATCGACCAGATC
GTCGAGCGCCTGGCCCAGGCCATCCGCGCCAGCGTCTGA
Translation:
MTMNNEPQSSSLDNFWMPFTANRQFKARPRLLESAEGIHYIAQGGRRILDGTAGLWCCNAGHGRREISEAVA
RQIATLDYAPPFQMGHPLPFELAARLAEIAPPGLNKVFFTNSGSESADTALKIALAYQRAIGQGTRTRLIGR
ELGYHGVGFGGLSVGGMVNNRKAFSANLLPGVDHLPHTLDVARNAFTVGLPEHGAEKAEELERLVTLHGAEN
IAAVIVEPMSGSAGVVLPPKGYLQRLREITRKHGILLIFDEVITGFGRVGEAFAAQRWGVVPDLLTCAKGLT
NGSIPMGAVFVDEKIHAAFMQGPQGAIEFFHGYTYSGHPVACAAALATLDIYRRDDLFQRAVELEGYWQDAL
FSLRDLPNVVDIRAVGLVGGVQLAPHADGPGKRGYDVFERCFWEHDLMVRVTGDIIAMSPPLIIDKPHIDQI
VERLAQAIRASV*
AnnotationID:1105GeneID:1096
AnnotatorUID: diggins
Modification Date/Time: 2004-10-15 17:05:14
Gene Name:
Confidence Code:3
GeneProduct:putative pyridoxal-dependent aminotransferase
Cell Localization:()
Synonyms:bioA
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(27) Transport of small molecules
Alternate Gene Product Name:putative adenosylmethionine-8-amino-7-oxononanoate aminotransferase
Functional Category Confidence Code:5
COGs:COG0161,pfam00202,COG0160,COG0160
Secondary Functional Category(ies):amino acid transport and metabolism
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAN56490.1|AE015786_4 (AE015786) aminotransferase, class III [Shewanella oneidensis MR-1]
          Length = 446

 Score =  634 bits (1636), Expect = 0.0
 Identities = 310/432 (71%), Positives = 359/432 (83%), Gaps = 1/432 (0%)

>emb|CAC47872.1| (AL591793) PUTATIVE OMEGA-AMINO ACID--PYRUVATE AMINOTRANSFERASE
           PROTEIN [Sinorhizobium meliloti]
          Length = 445

 Score =  599 bits (1544), Expect = e-170
 Identities = 292/445 (65%), Positives = 350/445 (78%), Gaps = 7/445 (1%)

>gb|AAM37340.1| (AE011886) omega-amino acid-pyruvate aminotransferase [Xanthomonas
           axonopodis pv. citri str. 306]
          Length = 450

 Score =  598 bits (1541), Expect = e-170
 Identities = 289/432 (66%), Positives = 342/432 (79%), Gaps = 1/432 (0%)






 
Structural Features:
COG0161, BioA, Adenosylmethionine-8-amino-7-oxononanoate aminotransferase 
[Coenzyme metabolism] 

pfam00202, Aminotran_3, Aminotransferase class-III.

COG0160, GabT, 4-aminobutyrate aminotransferase and related aminotransferases 
[Amino acid transport and metabolism]

COG4992, ArgD, Ornithine/acetylornithine aminotransferase 
[Amino acid transport and metabolism]








   
Genomic Context:






   
Comment:


















    ReferenceID:2195




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:19337




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:34780




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:1096_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:1096
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
1974
                           PA5313_tr
                           translation of PA5313
                           444
                           99.09
                           99.32
                           0
                           2300.0
     

     
     
67499
                           gb|AAG08698.1|AE004944_2
                           (AE004944) probable pyridoxal-dependent aminotransferase [Pseudomonas aeruginosa PAO1]
                           444
                           99.09
                           99.32
                           0
                           2300.0
     

     
     
67500
                           gb|AAN56490.1|AE015786_4
                           (AE015786) aminotransferase, class III [Shewanella oneidensis MR-1]
                           449
                           69.48
                           80.84
                           8
                           1632.0
     

     
     
67501
                           emb|CAC47872.1|
                           (AL591793) PUTATIVE OMEGA-AMINO ACID--PYRUVATE AMINOTRANSFERASE PROTEIN [Sinorhizobium meliloti]
                           448
                           65.40
                           78.34
                           7
                           1547.0
     

     
     
67507
                           gb|AAN34098.1|AE014586_5
                           (AE014586) omega-amino acid--pyruvate aminotransferase, putative [Brucella suis 1330]
                           449
                           64.81
                           77.06
                           12
                           1506.0
     

     






      

          
GC ORFID: 44098How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA5313Glimmer Score: 

          
Start: 5520756Stop: 5522090

          
Length: 1335


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA5313 translation of PA5313Homolog Bit Score 890.0

          
Other Homologs:  psyr_15may02_Scaffold2_revised_gene3504 (ORF: BLASTX 421.0), t_PA0132 (ORF: BLASTX 419.0), t_PA0299 (ORF: BLASTX 290.0), t_PA5313 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGACAATGAATAACGAGCCGCAGTCGAGCAGCCTCGACAACTTCTGGATGCCCTTCACCGCCAACCGCCAG 
TTCAAGGCGCGGCCGCGCCTGCTGGAAAGCGCCGAAGGCATCCACTATATCGCCCAGGGCGGGCGCCGCATC 
CTCGACGGCACCGCCGGCCTCTGGTGCTGCAATGCCGGCCACGGCCGGCGCGAGATCAGCGAAGCGGTGGCC 
CGGCAGATCGCCACCCTCGACTACGCCCCGCCGTTCCAGATGGGTCACCCGCTGCCGTTCGAACTCGCCGCG 
CGGCTGGCGGAAATCGCCCCGCCGGGCCTGAACAAAGTGTTCTTCACCAACTCCGGCTCGGAATCGGCGGAC 
ACCGCGCTGAAGATCGCCCTTGCCTACCAGCGCGCCATCGGCCAGGGCACCCGCACCCGCCTGATCGGCCGC 
GAACTGGGCTACCACGGGGTCGGCTTCGGCGGCCTGTCGGTAGGCGGCATGGTCAACAACCGCAAGGCCTTC 
TCCGCCAACCTGCTGCCGGGGGTCGACCACCTGCCGCACACCCTGGACGTCGCCCGCAACGCCTTCACCGTC 
GGCCTGCCCGAGCATGGTGCGGAAAAGGCCGAGGAGCTGGAACGCCTGGTGACCCTGCACGGCGCCGAGAAT 
ATCGCCGCGGTGATCGTCGAGCCGATGTCCGGCTCGGCCGGCGTGGTGCTGCCGCCCAAGGGCTACCTTCAG 
CGGCTGCGCGAGATCACCCGCAAGCATGGCATCCTGCTGATCTTCGACGAAGTGATCACCGGTTTCGGCCGC 
GTCGGCGAAGCCTTCGCCGCGCAGCGCTGGGGCGTCGTCCCGGACCTGTTGACCTGCGCCAAGGGGCTGACC 
AACGGCAGCATCCCGATGGGCGCCGTATTCGTCGACGAGAAGATCCACGCCGCCTTCATGCAAGGCCCGCAG 
GGCGCCATCGAGTTCTTCCACGGCTATACCTATTCCGGCCACCCGGTAGCCTGCGCCGCCGCCCTGGCGACC 
CTGGACATCTACCGTCGCGACGACCTGTTCCAGCGGGCCGTCGAACTGGAAGGCTACTGGCAGGACGCGCTG 
TTCAGCCTGCGCGACCTGCCCAACGTGGTCGACATCCGCGCCGTCGGCCTGGTCGGCGGCGTGCAACTGGCG 
CCGCACGCGGACGGCCCCGGCAAGCGCGGCTACGACGTCTTCGAGCGCTGCTTCTGGGAGCACGACCTGATG 
GTCCGGGTGACCGGCGACATCATCGCCATGTCGCCGCCGCTGATCATCGACAAGCCCCACATCGACCAGATC 
GTCGAGCGCCTGGCCCAGGCCATCCGCGCCAGCGTCTGA