ViewGene
Locus Name:
GeneID:
Location:

GeneID:1095
TrivialName: PA14_30110
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_30110
PAO1 Ortholog Locus:PA2629
Sequence Length:1371
Protein Length:456
Start: 2609210
Stop: 2607840
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG06017.1|AE004691_8 (AE004691) adenylosuccinate lyase [Pseudomonas aeruginosa PAO1]
Identities = 454/456 (99%), Positives = 455/456 (99%)
Sequence:
ATGCAGCTTTCCTCGCTCACCGCGGTATCCCCCGTCGATGGCCGCTATGCCGGCAAAACCAGCAGCCTGCGT
CCGATCTTCAGCGAATACGGCCTGATCCGTTTCCGCGTCATGGTGGAAGTCCGCTGGCTGCAGCGCCTCGCC
GCCCACGCCGGGATTCCCGAGGTCGCGCCGTTCTCCGCCGAAGCCAACGCCCTGCTCGACAGCCTGGCCAGC
GACTTCCAGCTGGAACACGCCGAACGCATCAAGGAAATCGAGCGCACCACCAACCACGACGTGAAAGCCGTG
GAGTACCTGCTCAAGGAACAGGCCGCCAAGCTCCCGGAGCTGGCCGCGGTCAGCGAGTTCATCCACTTCGCC
TGCACCTCCGAGGACATCAACAACCTGTCCCACGCCCTGATGCTCCGCGAGGGTCGCGACAGCGTGCTGCTG
CCGCTGATGCGCCAGATCGCCGAGGCCATCCGCGAACTGGCGGTGAAATTCGCCGACGTGCCGATGCTCTCC
CGCACCCACGGCCAGCCCGCCTCGCCGACCACCCTGGGCAAGGAACTGGCCAACGTCGTCTACCGCCTGGAG
CGGCAGATCAAGCAGGTCGCCGGCATCGAGTTGCTGGGCAAGATCAACGGCGCCGTGGGCAACTACAACGCC
CACCTGTCCGCCTATCCCGAAGTCGACTGGGAAGCCAACGCCCGCCAGTTCATCGAAGGCGACCTCGGCCTG
ACCTTCAACCCCTACACCACCCAGATCGAGCCGCACGACTACATCGCCGAGCTGTTCGATGCGATCGCCCGC
TTCAACACCATCCTCATCGACTTCGACCGCGACGTCTGGGGCTACATCTCCCTCGGCTACTTCAAGCAGAAG
ACCGTGGCCGGCGAGATCGGCTCCTCGACCATGCCGCACAAGGTCAACCCGATCGACTTCGAGAACTCCGAG
GGTAACCTCGGCATCGCCAACGCGCTATTCCAGCACCTGGCCAGCAAGCTGCCGATCTCGCGCTGGCAGCGC
GACCTGACCGACTCCACCGTGCTGCGCAACCTCGGTGTCGGCATCGCCCACAGCGTCATCGCCTACGAGGCC
AGCCTGAAGGGCATCGGCAAGCTGGAGCTGAACGCCCAGCGCATCGCCGAGGACCTGGACGCCTGCTGGGAA
GTCCTCGCCGAGCCGGTGCAGACCGTGATGCGTCGCTATGGCGTGGAAAACCCCTACGAAAAGCTGAAGGAA
CTGACCCGCGGCAAAGGCATCAGCGCCGAAGCCTTGCAGACTTTCATCGAAGAGCTGGCGATTCCCGCCGAG
GCCAAGGTCGAGCTGAAGAAGCTGACCCCGGCCGGCTACGTCGGCAATGCCGCCGCCCAGGCCAAGCGCATC
TGA
Translation:
MQLSSLTAVSPVDGRYAGKTSSLRPIFSEYGLIRFRVMVEVRWLQRLAAHAGIPEVAPFSAEANALLDSLAS
DFQLEHAERIKEIERTTNHDVKAVEYLLKEQAAKLPELAAVSEFIHFACTSEDINNLSHALMLREGRDSVLL
PLMRQIAEAIRELAVKFADVPMLSRTHGQPASPTTLGKELANVVYRLERQIKQVAGIELLGKINGAVGNYNA
HLSAYPEVDWEANARQFIEGDLGLTFNPYTTQIEPHDYIAELFDAIARFNTILIDFDRDVWGYISLGYFKQK
TVAGEIGSSTMPHKVNPIDFENSEGNLGIANALFQHLASKLPISRWQRDLTDSTVLRNLGVGIAHSVIAYEA
SLKGIGKLELNAQRIAEDLDACWEVLAEPVQTVMRRYGVENPYEKLKELTRGKGISAEALQTFIEELAIPAE
AKVELKKLTPAGYVGNAAAQAKRI*
AnnotationID:1104GeneID:1095
AnnotatorUID: diggins
Modification Date/Time: 2005-04-29 11:11:08
Gene Name:purB
Confidence Code:2
GeneProduct:adenylosuccinate lyase
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(18) Nucleotide biosynthesis and metabolism
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG0015
Secondary Functional Category(ies):
EC Number:4.3.2.2
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAO56838.1| (AE016868) adenylosuccinate lyase [Pseudomonas syringae pv. tomato
           str. DC3000]
          Length = 456

 Score =  807 bits (2084), Expect = 0.0

>gb|AAN69610.1|AE016594_7 (AE016789) adenylosuccinate lyase [Pseudomonas putida KT2440]
          Length = 456

 Score =  793 bits (2047), Expect = 0.0
 Identities = 399/456 (87%), Positives = 423/456 (92%)

>gb|AAF94285.1| (AE004193) adenylosuccinate lyase [Vibrio cholerae]
          Length = 456

 Score =  665 bits (1715), Expect = 0.0
 Identities = 319/449 (71%), Positives = 384/449 (85%)








 
Structural Features:
COG0015, PurB, Adenylosuccinate lyase [Nucleotide transport and metabolism]
CD-Length = 438 residues,  99.3% aligned
Score =  401 bits (1033), Expect = 6e-113
Identities = 158/456 (34%), Positives = 227/456 (49%), Gaps = 32/456 (7%)






   
Genomic Context:






   
Comment:


















    ReferenceID:2193




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:19335




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:33202




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:1095_cdd.html


    		




 
URL:

















    ReferenceID:34571




  
Author/Investigator(s):
        He B, Smith JM, Zalkin H.





  
Title:
        Escherichia coli purB gene: cloning, nucleotide sequence, and regulation by purR.




  
PubMed:
        1729205


MedLine:
        




    
Source:
J Bacteriol. 1992 Jan;174(1):130-6.






    
Reference Type:Journal 







    
Data:


    		




 
URL:http://www.pubmedcentral.nih.gov/articlerender.fcgi?tool=pubmed&pubmedid=1729205









           
Homologs By Global Alignment 

           

       



     
Gene ID:1095
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
1973
                           PA2629_tr
                           translation of PA2629
                           456
                           99.56
                           99.78
                           0
                           2301.0
     

     
     
67447
                           gb|AAG06017.1|AE004691_8
                           (AE004691) adenylosuccinate lyase [Pseudomonas aeruginosa PAO1]
                           456
                           99.56
                           99.78
                           0
                           2301.0
     

     
     
67448
                           gb|AAO56838.1|
                           (AE016868) adenylosuccinate lyase [Pseudomonas syringae pv. tomato str. DC3000]
                           456
                           87.71
                           93.85
                           0
                           2084.0
     

     
     
67449
                           gb|AAN69610.1|AE016594_7
                           (AE016789) adenylosuccinate lyase [Pseudomonas putida KT2440]
                           456
                           87.50
                           92.76
                           0
                           2047.0
     

     
     
67452
                           dbj|BAC59391.1|
                           (AP005076) adenylosuccinate lyase [Vibrio parahaemolyticus]
                           456
                           69.95
                           83.99
                           0
                           1712.0
     

     






      

          
GC ORFID: 44097How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA2629Glimmer Score: 

          
Start: 2344716Stop: 2346086

          
Length: 1371


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA2629 translation of PA2629Homolog Bit Score 890.0

          
Other Homologs:  psyr_15may02_Scaffold17_revised_gene2758 (ORF: BLASTX 823.0), t_PA2629 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGCAGCTTTCCTCGCTCACCGCGGTATCCCCCGTCGATGGCCGCTATGCCGGCAAAACCAGCAGCCTGCGT 
CCGATCTTCAGCGAATACGGCCTGATCCGTTTCCGCGTCATGGTGGAAGTCCGCTGGCTGCAGCGCCTCGCC 
GCCCACGCCGGGATTCCCGAGGTCGCGCCGTTCTCCGCCGAAGCCAACGCCCTGCTCGACAGCCTGGCCAGC 
GACTTCCAGCTGGAACACGCCGAACGCATCAAGGAAATCGAGCGCACCACCAACCACGACGTGAAAGCCGTG 
GAGTACCTGCTCAAGGAACAGGCCGCCAAGCTCCCGGAGCTGGCCGCGGTCAGCGAGTTCATCCACTTCGCC 
TGCACCTCCGAGGACATCAACAACCTGTCCCACGCCCTGATGCTCCGCGAGGGTCGCGACAGCGTGCTGCTG 
CCGCTGATGCGCCAGATCGCCGAGGCCATCCGCGAACTGGCGGTGAAATTCGCCGACGTGCCGATGCTCTCC 
CGCACCCACGGCCAGCCCGCCTCGCCGACCACCCTGGGCAAGGAACTGGCCAACGTCGTCTACCGCCTGGAG 
CGGCAGATCAAGCAGGTCGCCGGCATCGAGTTGCTGGGCAAGATCAACGGCGCCGTGGGCAACTACAACGCC 
CACCTGTCCGCCTATCCCGAAGTCGACTGGGAAGCCAACGCCCGCCAGTTCATCGAAGGCGACCTCGGCCTG 
ACCTTCAACCCCTACACCACCCAGATCGAGCCGCACGACTACATCGCCGAGCTGTTCGATGCGATCGCCCGC 
TTCAACACCATCCTCATCGACTTCGACCGCGACGTCTGGGGCTACATCTCCCTCGGCTACTTCAAGCAGAAG 
ACCGTGGCCGGCGAGATCGGCTCCTCGACCATGCCGCACAAGGTCAACCCGATCGACTTCGAGAACTCCGAG 
GGTAACCTCGGCATCGCCAACGCGCTATTCCAGCACCTGGCCAGCAAGCTGCCGATCTCGCGCTGGCAGCGC 
GACCTGACCGACTCCACCGTGCTGCGCAACCTCGGTGTCGGCATCGCCCACAGCGTCATCGCCTACGAGGCC 
AGCCTGAAGGGCATCGGCAAGCTGGAGCTGAACGCCCAGCGCATCGCCGAGGACCTGGACGCCTGCTGGGAA 
GTCCTCGCCGAGCCGGTGCAGACCGTGATGCGTCGCTATGGCGTGGAAAACCCCTACGAAAAGCTGAAGGAA 
CTGACCCGCGGCAAAGGCATCAGCGCCGAAGCCTTGCAGACTTTCATCGAAGAGCTGGCGATTCCCGCCGAG 
GCCAAGGTCGAGCTGAAGAAGCTGACCCCGGCCGGCTACGTCGGCAATGCCGCCGCCCAGGCCAAGCGCATC 
TGA