ViewGene
Locus Name:
GeneID:
Location:

GeneID:1094
TrivialName: PA14_37010
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_37010
PAO1 Ortholog Locus:PA2131
Sequence Length:1362
Protein Length:453
Start: 3296918
Stop: 3295557
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG05519.1|AE004640_8 (AE004640) fimbrial subunit CupA4 [Pseudomonas aeruginosa PAO1]
Identities = 442/453 (97%), Positives = 443/453 (97%)
Sequence:
ATGAACCACATGATTCTCCTGTCGTCCGCGCTGGCCCTCGGCGTGTCGCTGGGGTTTCCCGCCAGCGCCCAG
GCAACCTGCTACCGGGTCACCTCGGTAGGCAGCGAGACGACCACCTCGACCACCCAGATCCGCCCCGGCGAA
GGCACTGCGGGCAGTTGGACCGGCGCCTGCGACACCTGCAATGGCTCGCTCGGCCTGCCCAGCGTGGTCAAC
GTCAGCGACGAGAGTTTCCAGCCCTATCCGACGCTCATCGCCAGCGCGGTGGCGCCGCTGACCCAGTACGGC
GCCACCGGCGGCTACGACCCCGAGCGGGTGTTCTTCCGCTGTAGCGCCGGGGACGCCGTCTACGAGATGTTT
TCTACCAACGGCGACGATCTCTATAGCGGCTACTACACCGGCGCCGACACGGTGGGCAACGACATCGGCCTG
CAGGATGCCTACCGGACCGCCTGGCCCAACGTGCTGCTGCGCCTGACCAACGTCGAGACGGGGGAAACCATC
ACGCCGATCTGGAAGGAGCGCCAGCTCTCCGGGCTGGACATCGACTCGCGCGGCTTCCAGCTGGTCAAGGCG
AAGAACCTCGCAGCGGTACGCGCCGAGCTGTACAGCGCGCCGCTGGAGGCGATCCGCTACTACTCGCCGACG
ATCCTCTCGCAGCCCTATTCCTACACCCAGCCGGCGGCCTACATCGCCATCAAGGGGCCGGGCCTGACCGCG
CCGACCGTCGGCCAGGCGCACGTGGGCGGCAACTGGGGCGGCTGGTACAGCAACTGGCCGGGTGCCATCGGG
CTGTACCGCTACGTGACCCTGAAACGCTATCCCACCTGCGCGGTGATGACGGTCACCCCGCACGTGCAGTTC
CCGCCCATCACCCTGGCCGAGATCGATAGCGGCGGCGTGCGCGAGGCGCCCTTCGAACTCACCTTCAAGTGC
CAGAGCGGCATGACCAACGGCACCGGGGCCGGCGCCACGGCGCTGGGCATCCGCGTGTCCAGCGGGGCCCTG
GCGGCCAGCCCGGCGCTGGGCCTGGTCAACGCCAGTGGCGGACTGTCCTACCTGCTCTCCGACCGTTACGGG
GAGCCGGGCATTGCCCGTGGGGTCGGCATCCGCATCTACCGCGACGGCACGCCGATGACGCTCCTGGCCAAC
GAGAACTCCGCCGGCGGCAGCAACGCCGAGGCCACCGGCTGGTACCCCGCCATCGGTGGCGCGACCCAGGCC
AACGGCGGTAGCGGCGGCATCGACCTGTACCGCGAAACCTTCCGCGCGCGCCTGGAGAAACTCGCGCTCGGC
AGCCAGCCCGGCGTCACGGCGGGGCGAGTCGAGGCCACGGCGCAGGTGGTTATCCGTGTCCAGTAG
Translation:
MNHMILLSSALALGVSLGFPASAQATCYRVTSVGSETTTSTTQIRPGEGTAGSWTGACDTCNGSLGLPSVVN
VSDESFQPYPTLIASAVAPLTQYGATGGYDPERVFFRCSAGDAVYEMFSTNGDDLYSGYYTGADTVGNDIGL
QDAYRTAWPNVLLRLTNVETGETITPIWKERQLSGLDIDSRGFQLVKAKNLAAVRAELYSAPLEAIRYYSPT
ILSQPYSYTQPAAYIAIKGPGLTAPTVGQAHVGGNWGGWYSNWPGAIGLYRYVTLKRYPTCAVMTVTPHVQF
PPITLAEIDSGGVREAPFELTFKCQSGMTNGTGAGATALGIRVSSGALAASPALGLVNASGGLSYLLSDRYG
EPGIARGVGIRIYRDGTPMTLLANENSAGGSNAEATGWYPAIGGATQANGGSGGIDLYRETFRARLEKLALG
SQPGVTAGRVEATAQVVIRVQ*
AnnotationID:1103GeneID:1094
AnnotatorUID: danlee
Modification Date/Time: 2006-01-30 11:11:44
Gene Name:cupA4
Confidence Code:1
GeneProduct:fimbrial subunit CupA4
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(16) Motility & Attachment
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAO70109.1| (AE016842) putative fimbrial protein [Salmonella enterica subsp.
           enterica serovar Typhi Ty2]
          Length = 441

 Score =  243 bits (620), Expect = 2e-63
 Identities = 167/462 (36%), Positives = 243/462 (52%), Gaps = 33/462 (7%)








 
Structural Features:
CDD Search: No hits above 0.01 threshold.






   
Genomic Context:






   
Comment:


















    ReferenceID:2191




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:19333




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:34421




  
Author/Investigator(s):
        Vallet I, Olson JW, Lory S, Lazdunski A, Filloux A.





  
Title:
        The chaperone/usher pathways of Pseudomonas aeruginosa: identification of fimbrial gene clusters (cup) and their involvement in biofilm formation.




  
PubMed:
        11381121


MedLine:
        




    
Source:
Proc Natl Acad Sci U S A. 2001 Jun 5;98(12):6911-6. Epub 2001 May 29.






    
Reference Type:Journal 







    
Data:


    		




 
URL:http://www.pubmedcentral.nih.gov/articlerender.fcgi?tool=pubmed&pubmedid=11381121









           
Homologs By Global Alignment 

           

       



     
Gene ID:1094
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
1972
                           PA2131_tr
                           translation of PA2131
                           453
                           97.57
                           97.79
                           0
                           2300.0
     

     
     
67443
                           gb|AAG05519.1|AE004640_8
                           (AE004640) fimbrial subunit CupA4 [Pseudomonas aeruginosa PAO1]
                           453
                           97.57
                           97.79
                           0
                           2300.0
     

     
     
67444
                           gb|AAP84168.1|
                           (AY273869) fimbrial subunit [Pseudomonas aeruginosa]
                           454
                           68.50
                           79.73
                           7
                           1619.0
     

     
     
67445
                           emb|CAC93347.1|
                           (AJ414159) putative exported protein [Yersinia pestis CO92]
                           478
                           41.84
                           55.23
                           48
                           905.0
     

     
     
67446
                           gb|AAM83939.1|AE013635_4
                           (AE013635) conserved hypothetical protein [Yersinia pestis KIM]
                           456
                           40.35
                           53.07
                           69
                           849.0
     

     






      

          
GC ORFID: 44096How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA2131Glimmer Score: 

          
Start: 1656996Stop: 1658357

          
Length: 1362


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TAGTruncated Stop: 

          
Homolog: t_PA2131 translation of PA2131Homolog Bit Score 890.0

          
Other Homologs:  t_RL041 (ORF: BLASTX 627.0), t_PA2131 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAACCACATGATTCTCCTGTCGTCCGCGCTGGCCCTCGGCGTGTCGCTGGGGTTTCCCGCCAGCGCCCAG 
GCAACCTGCTACCGGGTCACCTCGGTAGGCAGCGAGACGACCACCTCGACCACCCAGATCCGCCCCGGCGAA 
GGCACTGCGGGCAGTTGGACCGGCGCCTGCGACACCTGCAATGGCTCGCTCGGCCTGCCCAGCGTGGTCAAC 
GTCAGCGACGAGAGTTTCCAGCCCTATCCGACGCTCATCGCCAGCGCGGTGGCGCCGCTGACCCAGTACGGC 
GCCACCGGCGGCTACGACCCCGAGCGGGTGTTCTTCCGCTGTAGCGCCGGGGACGCCGTCTACGAGATGTTT 
TCTACCAACGGCGACGATCTCTATAGCGGCTACTACACCGGCGCCGACACGGTGGGCAACGACATCGGCCTG 
CAGGATGCCTACCGGACCGCCTGGCCCAACGTGCTGCTGCGCCTGACCAACGTCGAGACGGGGGAAACCATC 
ACGCCGATCTGGAAGGAGCGCCAGCTCTCCGGGCTGGACATCGACTCGCGCGGCTTCCAGCTGGTCAAGGCG 
AAGAACCTCGCAGCGGTACGCGCCGAGCTGTACAGCGCGCCGCTGGAGGCGATCCGCTACTACTCGCCGACG 
ATCCTCTCGCAGCCCTATTCCTACACCCAGCCGGCGGCCTACATCGCCATCAAGGGGCCGGGCCTGACCGCG 
CCGACCGTCGGCCAGGCGCACGTGGGCGGCAACTGGGGCGGCTGGTACAGCAACTGGCCGGGTGCCATCGGG 
CTGTACCGCTACGTGACCCTGAAACGCTATCCCACCTGCGCGGTGATGACGGTCACCCCGCACGTGCAGTTC 
CCGCCCATCACCCTGGCCGAGATCGATAGCGGCGGCGTGCGCGAGGCGCCCTTCGAACTCACCTTCAAGTGC 
CAGAGCGGCATGACCAACGGCACCGGGGCCGGCGCCACGGCGCTGGGCATCCGCGTGTCCAGCGGGGCCCTG 
GCGGCCAGCCCGGCGCTGGGCCTGGTCAACGCCAGTGGCGGACTGTCCTACCTGCTCTCCGACCGTTACGGG 
GAGCCGGGCATTGCCCGTGGGGTCGGCATCCGCATCTACCGCGACGGCACGCCGATGACGCTCCTGGCCAAC 
GAGAACTCCGCCGGCGGCAGCAACGCCGAGGCCACCGGCTGGTACCCCGCCATCGGTGGCGCGACCCAGGCC 
AACGGCGGTAGCGGCGGCATCGACCTGTACCGCGAAACCTTCCGCGCGCGCCTGGAGAAACTCGCGCTCGGC 
AGCCAGCCCGGCGTCACGGCGGGGCGAGTCGAGGCCACGGCGCAGGTGGTTATCCGTGTCCAGTAG