ViewGene
Locus Name:
GeneID:
Location:

GeneID:1093
TrivialName: PA14_50270
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_50270
PAO1 Ortholog Locus:PA1094
Sequence Length:1425
Protein Length:474
Start: 4464871
Stop: 4463447
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04483.1|AE004540_3 (AE004540) flagellar capping protein FliD [Pseudomonas aeruginosa PAO1]
Identities = 472/474 (99%), Positives = 473/474 (99%)
Sequence:
ATGGCCGGTATCTCGATAGGAGTAGGCTCGACCGATTACACCGATCTGGTGAACAAGATGGTGAACCTGGAG
GGCGCGGCTAAGACCAACCAGCTCGCCACCCTGGAGAAGACCACCACTACTCGTCTCACTGCCCTGGGCCAG
TTCAAGAGTGCGATCAGCGCGTTCCAGACGGCGCTCACGGCGCTGAACAGCAATGCTGTGTTCATGGCGCGC
ACCGCCAAGTCTTCCAACGAAGACATTCTCAAGGCGAGCGCCACCCAGAGCGCGGTGGCTGGCACCTACCAG
ATCCAGGTCAACAGCCTTGCCACCAGCAGCAAGATTGCCCTGCAGGCCATCGCCGATCCGGCCAATGCCAAG
TTCAACAGCGGTACGCTGAACATCTCCGTCGGCGACACCAAGCTGCCGGCGATCACCGTCGACTCCAGCAAC
AACACGCTGGCCGGCATGCGCGATGCCATCAATCAGGCCGGCAAGGAAGCGGGCGTCAGCGCCACCATCATT
ACCGACAACTCCGGCTCGCGTCTGGTGCTGAGCAGCACCAAGACCGGCGACGGCAAGGACATCAAGGTCGAG
GTCAGCGATGACGGCAGCGGCGGCAATACGTCGCTCAGCCAACTGGCTTTCGATCCCGCGACGGCTCCCAAG
CTCAGCGACGGCGCCGCTGCCGGCTACGTGACCAAGGCGGCAAACGGTGAAATCACCGTCGACGGCCTCAAG
CGCAGCATCGCCTCCAACAGCGTGAGCGACGTCATTGACGGCGTCAGCTTCGACGTGAAAGCCGTCACCGAA
GCCGGCAAGCCGATCACCCTGACTGTTTCCCGGGACGATGCCGGGGTGAAGGAGAACGTCAAGAAGTTCGTC
GAGGCCTACAACACCCTCACCAAGTTCATCAACGAACAGACCGTGGTGACCAAGGTTGGCGAAGACAAGACT
CCGGTCACCGGAGCTCTGCTCGGCGATGCCTCCGTCCGTGCGCTGGTCAACACCATGCGCAGCGAACTGATC
GCCTCCAACGAAAACGGCAGCGTGCGCAACCTTGCCGCCCTCGGAATCACCACGACCAAGGACGGCACGCTG
GAGATCGACGAGAAGAAGCTCGACAAGGCGATCAGCGCCGACTTCGAAGGCGTTGCCAGCTACTTCACCGGC
GATACCGGCCTGGCCAAGCGCCTGGGCGATAAGATGAAGCCCTACACCGACGCCCAGGGTATTCTCGACCAG
CGCACCACGACCTTGCAGAAGACCCTCAGCAACGTCGACACGCAGAAGGCTGATCTGGCCAAGCGGCTGGCG
GCGCTGCAGGAGAAACTGACCACCCAGTTCAACCTGCTTTCCGCGATGCAGGATGAAATGACCAAGCGTCAG
AAGAGCATCACGGACAACCTCGCCAGCCTGCCTTACGGCAGCGGCAAGAAGACCTGA
Translation:
MAGISIGVGSTDYTDLVNKMVNLEGAAKTNQLATLEKTTTTRLTALGQFKSAISAFQTALTALNSNAVFMAR
TAKSSNEDILKASATQSAVAGTYQIQVNSLATSSKIALQAIADPANAKFNSGTLNISVGDTKLPAITVDSSN
NTLAGMRDAINQAGKEAGVSATIITDNSGSRLVLSSTKTGDGKDIKVEVSDDGSGGNTSLSQLAFDPATAPK
LSDGAAAGYVTKAANGEITVDGLKRSIASNSVSDVIDGVSFDVKAVTEAGKPITLTVSRDDAGVKENVKKFV
EAYNTLTKFINEQTVVTKVGEDKTPVTGALLGDASVRALVNTMRSELIASNENGSVRNLAALGITTTKDGTL
EIDEKKLDKAISADFEGVASYFTGDTGLAKRLGDKMKPYTDAQGILDQRTTTLQKTLSNVDTQKADLAKRLA
ALQEKLTTQFNLLSAMQDEMTKRQKSITDNLASLPYGSGKKT*
AnnotationID:1102GeneID:1093
AnnotatorUID: danlee
Modification Date/Time: 2004-05-21 11:11:14
Gene Name:fliD
Confidence Code:1
GeneProduct:flagellar capping protein FliD
Cell Localization:(3) Flagellar
Synonyms:PA1094
Cell Localization Confidence Code:1
MolecularFunction:
Functional Category:(16) Motility & Attachment
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG1345
Secondary Functional Category(ies):Cell wall / LPS / capsule
EC Number:
Status:ACTIVE
Pathway:
Flagella assembly 
Homology:






 
Structural Features:
COG1345, FliD, Flagellar capping protein [Cell motility and secretion]
             CD-Length = 483 residues,  99.4% aligned
             Score =  275 bits (705), Expect = 6e-75






   
Genomic Context:
fliC-fliD (Ecoli) 






   
Comment:


















    ReferenceID:2189




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:19331




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:32252




  
Author/Investigator(s):
        Arora SK, Ritchings BW, Almira EC, Lory S, Ramphal R.





  
Title:
        The Pseudomonas aeruginosa flagellar cap protein, FliD, is responsible for mucin adhesion.
The Pseudomonas aeruginosa flagellar cap protein, FliD, is responsible for mucin adhesion.





  
PubMed:
        98147712


MedLine:
        




    
Source:
Infect Immun. 1998 Mar;66(3):1000-7.






    
Reference Type:Journal 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:1093
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
1971
                           PA1094_tr
                           translation of PA1094
                           474
                           99.57
                           99.78
                           0
                           2301.0
     

     
     
67432
                           gb|AAG04483.1|AE004540_3
                           (AE004540) flagellar capping protein FliD [Pseudomonas aeruginosa PAO1]
                           474
                           99.57
                           99.78
                           0
                           2301.0
     

     
     
67433
                           gb|AAF35976.1|AF139821_1
                           (AF139821) flagellar cap protein FliD [Pseudomonas aeruginosa]
                           474
                           99.57
                           99.78
                           0
                           2301.0
     

     
     
67434
                           gb|AAF35975.1|AF139820_1
                           (AF139820) flagellar cap protein FliD [Pseudomonas aeruginosa]
                           474
                           99.57
                           99.78
                           0
                           2301.0
     

     
     
67435
                           gb|AAF35974.1|AF139819_1
                           (AF139819) flagellar cap protein FliD [Pseudomonas aeruginosa]
                           474
                           99.57
                           99.78
                           0
                           2301.0
     

     






      

          
GC ORFID: 44095How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA1094Glimmer Score: 

          
Start: 489037Stop: 490461

          
Length: 1425


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA1094 translation of PA1094Homolog Bit Score 890.0

          
Other Homologs:  t_PA1094 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGGCCGGTATCTCGATAGGAGTAGGCTCGACCGATTACACCGATCTGGTGAACAAGATGGTGAACCTGGAG 
GGCGCGGCTAAGACCAACCAGCTCGCCACCCTGGAGAAGACCACCACTACTCGTCTCACTGCCCTGGGCCAG 
TTCAAGAGTGCGATCAGCGCGTTCCAGACGGCGCTCACGGCGCTGAACAGCAATGCTGTGTTCATGGCGCGC 
ACCGCCAAGTCTTCCAACGAAGACATTCTCAAGGCGAGCGCCACCCAGAGCGCGGTGGCTGGCACCTACCAG 
ATCCAGGTCAACAGCCTTGCCACCAGCAGCAAGATTGCCCTGCAGGCCATCGCCGATCCGGCCAATGCCAAG 
TTCAACAGCGGTACGCTGAACATCTCCGTCGGCGACACCAAGCTGCCGGCGATCACCGTCGACTCCAGCAAC 
AACACGCTGGCCGGCATGCGCGATGCCATCAATCAGGCCGGCAAGGAAGCGGGCGTCAGCGCCACCATCATT 
ACCGACAACTCCGGCTCGCGTCTGGTGCTGAGCAGCACCAAGACCGGCGACGGCAAGGACATCAAGGTCGAG 
GTCAGCGATGACGGCAGCGGCGGCAATACGTCGCTCAGCCAACTGGCTTTCGATCCCGCGACGGCTCCCAAG 
CTCAGCGACGGCGCCGCTGCCGGCTACGTGACCAAGGCGGCAAACGGTGAAATCACCGTCGACGGCCTCAAG 
CGCAGCATCGCCTCCAACAGCGTGAGCGACGTCATTGACGGCGTCAGCTTCGACGTGAAAGCCGTCACCGAA 
GCCGGCAAGCCGATCACCCTGACTGTTTCCCGGGACGATGCCGGGGTGAAGGAGAACGTCAAGAAGTTCGTC 
GAGGCCTACAACACCCTCACCAAGTTCATCAACGAACAGACCGTGGTGACCAAGGTTGGCGAAGACAAGACT 
CCGGTCACCGGAGCTCTGCTCGGCGATGCCTCCGTCCGTGCGCTGGTCAACACCATGCGCAGCGAACTGATC 
GCCTCCAACGAAAACGGCAGCGTGCGCAACCTTGCCGCCCTCGGAATCACCACGACCAAGGACGGCACGCTG 
GAGATCGACGAGAAGAAGCTCGACAAGGCGATCAGCGCCGACTTCGAAGGCGTTGCCAGCTACTTCACCGGC 
GATACCGGCCTGGCCAAGCGCCTGGGCGATAAGATGAAGCCCTACACCGACGCCCAGGGTATTCTCGACCAG 
CGCACCACGACCTTGCAGAAGACCCTCAGCAACGTCGACACGCAGAAGGCTGATCTGGCCAAGCGGCTGGCG 
GCGCTGCAGGAGAAACTGACCACCCAGTTCAACCTGCTTTCCGCGATGCAGGATGAAATGACCAAGCGTCAG 
AAGAGCATCACGGACAACCTCGCCAGCCTGCCTTACGGCAGCGGCAAGAAGACCTGA