ViewGene

Locus Name:
GeneID:
Location:

GeneID:1092
TrivialName: PA14_52420
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_52420
PAO1 Ortholog Locus:PA0916
Sequence Length:1323
Protein Length:440
Start: 4651789
Stop: 4653111
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04305.1|AE004525_13 (AE004525) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 439/440 (99%), Positives = 439/440 (99%)
Sequence:
ATGTCCACCCCCACTCCCAAAGTCGGCTTCGTCAGTCTTGGATGCCCCAAGGCGCTGGTCGACTCCGAGCGC
ATCCTCACCCAGCTGCGCATGGAAGGCTATGAGGTCGTCCCGACCTACGAAGACGCCGACGTCGTGGTGGTC
AACACCTGCGGTTTCATCGACAGCGCCAAGGCCGAGTCCCTGGAAGTGATCGGCGAAGCCATCGCCGAGAAC
GGCAAGGTCATCGTCACCGGCTGCATGGGCGTGGAAGAGCACACGATCCGCGACGTGCACCCCAGCGTCCTG
GCGGTCACCGGCCCACAACAGTACGAGCAGGTAGTCACCGCGGTGCACGAAGTGGTGCCGCCGAAGACCGAA
CACAACCCGCTGGTCGACCTGGTCCCGCCGCAAGGCGTCAAGCTGACCCCGCGCCACTACGCCTACCTGAAG
ATTTCCGAAGGCTGCAACCACAGTTGCAGCTTCTGCATCATCCCGTCCATGCGCGGCAAGCTGGTCAGCCGG
CCGGTCGGCGACGTGCTGAGCGAGGCCGAGCGCCTGGTCAAGGCCGGGGTCAAGGAACTCCTGGTGATTTCC
CAGGACACCAGCGCCTACGGCGTCGACCTGAAGTACAAGACCGACTTCTGGAACGGCCAGCCGGTCAAGACC
CGCATGAAGGAACTCTGCGAGGCGCTGAGCAGCATGGGCGTATGGGTTCGCCTGCACTACGTCTACCCGTAC
CCCAACGTCGACGACGTGATCCCGCTGATGGCCGCCGGCAAGCTCCTGCCGTACCTCGACATCCCCTTCCAG
CACGCCAGCCCGAAGGTGCTCAAGGCCATGAAGCGCCCGGCCTTCGAGGACAAGACCCTGGCCCGGATCAAG
CAGTGGCGCGAGATCTGCCCGGAACTGACCATCCGCTCGACCTTCATCGTCGGCTTCCCGGGCGAAACCGAA
GAAGACTTCCAGTACCTGCTCGACTGGCTGACGGAAGCCCAGCTCGACCGCGTCGGCTGCTTCCAGTACTCC
CCCGTCGAAGGCGCTCCGGCCAACGAGCTGGGCCTGGAGCCGGTGCCGGACGAGGTCAAGCAGGACCGCTGG
GAACGCTTCATGGCCCACCAGCAGGCGATCTCCGCCGCTCGCCTGCAGCTCAAGGTCGGCAAGGAAATCGAA
GTGCTGATCGACGAAGTCGACGAACAGGGCGCGGTCGGCCGCTCCTGGGCCGACGCTCCGGAAATCGACGGC
AACGTGTTCGTCGACAGCGACGAGCTGAAGCCGGGCGACAAGGTCCGCGTGCGCATCACCGATGCCGACGAG
TACGACCTCTGGGCCGAGCTGGTCTGA
Translation:
MSTPTPKVGFVSLGCPKALVDSERILTQLRMEGYEVVPTYEDADVVVVNTCGFIDSAKAESLEVIGEAIAEN
GKVIVTGCMGVEEHTIRDVHPSVLAVTGPQQYEQVVTAVHEVVPPKTEHNPLVDLVPPQGVKLTPRHYAYLK
ISEGCNHSCSFCIIPSMRGKLVSRPVGDVLSEAERLVKAGVKELLVISQDTSAYGVDLKYKTDFWNGQPVKT
RMKELCEALSSMGVWVRLHYVYPYPNVDDVIPLMAAGKLLPYLDIPFQHASPKVLKAMKRPAFEDKTLARIK
QWREICPELTIRSTFIVGFPGETEEDFQYLLDWLTEAQLDRVGCFQYSPVEGAPANELGLEPVPDEVKQDRW
ERFMAHQQAISAARLQLKVGKEIEVLIDEVDEQGAVGRSWADAPEIDGNVFVDSDELKPGDKVRVRITDADE
YDLWAELV*
AnnotationID:1101GeneID:1092
AnnotatorUID: danlee
Modification Date/Time: 2004-05-06 16:04:48
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:PA0916, yliG
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(20) Putative enzymes
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG0621
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:
Homology:
similar to putative 2-methylthioadenine synthetases.
Structural Features:
COG0621, MiaB, 2-methylthioadenine synthetase. Score: 484, 1e-137
smart00729, Elp3, Elongator protein 3, MiaB family, Radical SAM. Score: 144, 1e-35
pfam00919, UPF0004, Uncharacterized protein family UPF0004. Score: 115, 1e-26
Genomic Context:
Comment:
ReferenceID:2187
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:19329
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
Homologs By Global Alignment
Gene ID:1092

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
1970 PA0916_tr translation of PA0916 440 99.77 99.77 0 2301.0
67390 gb|AAG04305.1|AE004525_13 (AE004525) conserved hypothetical protein [Pseudomonas aeruginosa PAO1] 440 99.77 99.77 0 2301.0
67392 gb|AAO57476.1| (AE016870) conserved hypothetical protein TIGR01125 [Pseudomonas syringae pv. tomato str. DC3000] 443 83.97 92.09 3 1995.0
67391 gb|AAN66821.1|AE016311_1 (AE016778) conserved hypothetical protein TIGR01125 [Pseudomonas putida KT2440] 470 83.61 89.57 30 2088.0
67394 emb|CAE39991.1| (BX640423) conserved hypothetical protein [Bordetella parapertussis] 442 83.03 90.49 5 1937.0
GC ORFID: 44094How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA0916Glimmer Score:
Start: 302118Stop: 300796
Length: 1323
Start Codon: ATGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: t_PA0916 translation of PA0916Homolog Bit Score 890.0
Other Homologs: psyr_15may02_Scaffold3_revised_gene4769 (ORF: BLASTX 776.0), t_PA0916 (ORF: GLIMMER)
GC ORF Sequence
ATGTCCACCCCCACTCCCAAAGTCGGCTTCGTCAGTCTTGGATGCCCCAAGGCGCTGGTCGACTCCGAGCGC
ATCCTCACCCAGCTGCGCATGGAAGGCTATGAGGTCGTCCCGACCTACGAAGACGCCGACGTCGTGGTGGTC
AACACCTGCGGTTTCATCGACAGCGCCAAGGCCGAGTCCCTGGAAGTGATCGGCGAAGCCATCGCCGAGAAC
GGCAAGGTCATCGTCACCGGCTGCATGGGCGTGGAAGAGCACACGATCCGCGACGTGCACCCCAGCGTCCTG
GCGGTCACCGGCCCACAACAGTACGAGCAGGTAGTCACCGCGGTGCACGAAGTGGTGCCGCCGAAGACCGAA
CACAACCCGCTGGTCGACCTGGTCCCGCCGCAAGGCGTCAAGCTGACCCCGCGCCACTACGCCTACCTGAAG
ATTTCCGAAGGCTGCAACCACAGTTGCAGCTTCTGCATCATCCCGTCCATGCGCGGCAAGCTGGTCAGCCGG
CCGGTCGGCGACGTGCTGAGCGAGGCCGAGCGCCTGGTCAAGGCCGGGGTCAAGGAACTCCTGGTGATTTCC
CAGGACACCAGCGCCTACGGCGTCGACCTGAAGTACAAGACCGACTTCTGGAACGGCCAGCCGGTCAAGACC
CGCATGAAGGAACTCTGCGAGGCGCTGAGCAGCATGGGCGTATGGGTTCGCCTGCACTACGTCTACCCGTAC
CCCAACGTCGACGACGTGATCCCGCTGATGGCCGCCGGCAAGCTCCTGCCGTACCTCGACATCCCCTTCCAG
CACGCCAGCCCGAAGGTGCTCAAGGCCATGAAGCGCCCGGCCTTCGAGGACAAGACCCTGGCCCGGATCAAG
CAGTGGCGCGAGATCTGCCCGGAACTGACCATCCGCTCGACCTTCATCGTCGGCTTCCCGGGCGAAACCGAA
GAAGACTTCCAGTACCTGCTCGACTGGCTGACGGAAGCCCAGCTCGACCGCGTCGGCTGCTTCCAGTACTCC
CCCGTCGAAGGCGCTCCGGCCAACGAGCTGGGCCTGGAGCCGGTGCCGGACGAGGTCAAGCAGGACCGCTGG
GAACGCTTCATGGCCCACCAGCAGGCGATCTCCGCCGCTCGCCTGCAGCTCAAGGTCGGCAAGGAAATCGAA
GTGCTGATCGACGAAGTCGACGAACAGGGCGCGGTCGGCCGCTCCTGGGCCGACGCTCCGGAAATCGACGGC
AACGTGTTCGTCGACAGCGACGAGCTGAAGCCGGGCGACAAGGTCCGCGTGCGCATCACCGATGCCGACGAG
TACGACCTCTGGGCCGAGCTGGTCTGA