ViewGene
Locus Name:
GeneID:
Location:

GeneID:1091
TrivialName: PA14_06450
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_06450
PAO1 Ortholog Locus:PA0494
Sequence Length:1377
Protein Length:458
Start: 565793
Stop: 567169
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG03883.1|AE004486_12 (AE004486) probable acyl-CoA carboxylase subunit [Pseudomonas aeruginosa PAO1]
Identities = 455/458 (99%), Positives = 457/458 (99%)
Sequence:
ATGCACAAGCGACTGAACAAGCTGCTGGTGGCCAATCGCGGCGAGATCGCCGTGCGCATCATCCGCGCCGCG
CAGGCACTGGGCATTCCCACGGTAGCGGTGTGCAGCGAGGCGGATCGCGATTCGCTGGCCGCGCGGCTGGCC
GATGAGGTACGTCTGATCGGCCCTGCGCGGGCCGAGCGGAGCTACCTGGATATTGAGGCGATTCTCATGGCG
GCGCGGGAAACCGGTGCCGACTCGATCCATCCCGGCTACGGTTTCCTCTCCGAGAACCCTGCCTTCGCCGAA
GCGGTGCAGGCGGCCGGACTGGTCTTCGTCGGTCCGGATGCGCAGACCATCCGCCGCATGGGCGACAAGGCC
GAGGCGCGGCGTACCGCGATGGCCGCCGGGGTGCCGGTGGTGCCGGGCTCGCCCGGCGAGCTGGACGACCTC
GACGCGGCGCTGGCCTGCGCCGAAGAGGTCGGCTATCCGCTGCTGGTCAAGGCCTCCGCTGGCGGCGGCGGG
CGTGGCATCCGTATCGCCCACGACGCCGACGAACTGCGTCGGGAATTCCCCATCGCCCAGCGCGAGGCGCAG
GCCGCCTTCGGTTCGCCGGCGGTGTACCTGGAGCGCTTCATCCGCCAGGCGCGGCACATCGAAGTGCAGATC
CTCGGCGATGGCGAGCGCGCGGTGCATCTGTTCGAACGCGAATGCTCGCTGCAGCGGCGGCGCCAGAAGGTC
TTCGAGGAGGCACCTTCGGCGGCGCTGGACGGCGCGCAGCGCCAGGCCCTCTGCGAGAGCGCGGTGCGCCTG
GCGCAGAGTCTCGGCTATCGTGGCGCGGGCACCCTGGAATACCTGTTCGACGCGCACAGCGGCGAGTTCTTC
TTCATCGAGATGAACACCCGTATCCAGGTCGAGCATCCGGTCAGCGAGATGGTCACCGGCATCGACCTGGTC
CAGGCCATGCTGCGCATCGCCGCCGGCGAGGCGCTGCCCTGGCGCCAGGAGGACATTCGCCTGAACGGCGCG
GCGCTGGAGATGCGGATCAACGCCGAAGACCCGGCGCGCAATTTCTTCCCCAGCCCCGGCACCGTGGAGCGC
CTGGAATGGCCGCAGGGCGAGGGCGTGCGAGTGGACAGCCACCTGTATCCCGGCTACCGGGTGCCGCCGTAC
TACGATTCGTTGCTGGCCAAGCTGATCGTCCATGGTCGCGACCGCGACGAAGCGTTCGCCCGCGCGCGCCAG
GCGCTGGAGCGCACCGTGCTGGCCGGCATGGCCACTACCCTGCCGCTGCACCGCTGGCTGCTCGCCGATGCG
CGGGTACAGGCCGCGCAGTTCGATACCGCTACCCTGGAAACCTGGCTCGCCGAGCGGACCGCCGCCGCGCAG
GAGGTTTGA
Translation:
MHKRLNKLLVANRGEIAVRIIRAAQALGIPTVAVCSEADRDSLAARLADEVRLIGPARAERSYLDIEAILMA
ARETGADSIHPGYGFLSENPAFAEAVQAAGLVFVGPDAQTIRRMGDKAEARRTAMAAGVPVVPGSPGELDDL
DAALACAEEVGYPLLVKASAGGGGRGIRIAHDADELRREFPIAQREAQAAFGSPAVYLERFIRQARHIEVQI
LGDGERAVHLFERECSLQRRRQKVFEEAPSAALDGAQRQALCESAVRLAQSLGYRGAGTLEYLFDAHSGEFF
FIEMNTRIQVEHPVSEMVTGIDLVQAMLRIAAGEALPWRQEDIRLNGAALEMRINAEDPARNFFPSPGTVER
LEWPQGEGVRVDSHLYPGYRVPPYYDSLLAKLIVHGRDRDEAFARARQALERTVLAGMATTLPLHRWLLADA
RVQAAQFDTATLETWLAERTAAAQEV*
AnnotationID:1100GeneID:1091
AnnotatorUID: diggins
Modification Date/Time: 2005-03-27 17:05:43
Gene Name:
Confidence Code:3
GeneProduct:putative acyl-CoA carboxylase subunit
Cell Localization:()
Synonyms:accC
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(13) Fatty acid and phospholipid metabolism
Alternate Gene Product Name:putative biotin carboxylase
Functional Category Confidence Code:5
COGs:COG0439
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>emb|CAE32069.1| (BX640441) biotin carboxylase [Bordetella bronchiseptica]
          Length = 456

 Score =  483 bits (1244), Expect = e-136
 Identities = 247/438 (56%), Positives = 310/438 (70%)

>emb|CAE41191.1| (BX640413) biotin carboxylase [Bordetella pertussis]
          Length = 456

 Score =  482 bits (1240), Expect = e-135
 Identities = 246/438 (56%), Positives = 308/438 (70%)

>gb|AAN66185.1|AE016246_2 (AE016776) acetyl-CoA carboxylase, biotin carboxylase [Pseudomonas
           putida KT2440]
          Length = 451

 Score =  476 bits (1225), Expect = e-133
 Identities = 245/433 (56%), Positives = 313/433 (72%), Gaps = 5/433 (1%)






 
Structural Features:
COG0439, AccC, Biotin carboxylase [Lipid metabolism]
CD-Length = 449 residues, 100.0% aligned
Score =  553 bits (1426), Expect = 2e-158
Identities = 275/450 (61%), Positives = 333/450 (74%), Gaps = 2/450 (0%)






   
Genomic Context:






   
Comment:


















    ReferenceID:2185




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:19327




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:33805




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:1091_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:1091
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
1964
                           PA0494_tr
                           translation of PA0494
                           458
                           99.34
                           99.78
                           0
                           2303.0
     

     
     
67090
                           gb|AAG03883.1|AE004486_12
                           (AE004486) probable acyl-CoA carboxylase subunit [Pseudomonas aeruginosa PAO1]
                           458
                           99.34
                           99.78
                           0
                           2303.0
     

     
     
67094
                           gb|AAN66185.1|AE016246_2
                           (AE016776) acetyl-CoA carboxylase, biotin carboxylase [Pseudomonas putida KT2440]
                           460
                           54.13
                           69.34
                           11
                           1230.0
     

     
     
67095
                           gb|AAG08233.1|AE004898_4
                           (AE004898) biotin carboxylase [Pseudomonas aeruginosa PAO1]
                           460
                           53.91
                           68.26
                           13
                           1217.0
     

     
     
67096
                           gb|AAA16041.1|
                           (L14612) biotin carboxylase [Pseudomonas aeruginosa]
                           460
                           53.91
                           68.26
                           13
                           1217.0
     

     






      

          
GC ORFID: 44093How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA0494Glimmer Score: 

          
Start: 6367135Stop: 6368511

          
Length: 1377


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA0494 translation of PA0494Homolog Bit Score 891.0

          
Other Homologs:  t_PA4848 (ORF: BLASTX 474.0), psyr_15may02_Scaffold4_revised_gene5770 (ORF: BLASTX 449.0), t_PA5436 (ORF: BLASTX 412.0), psyr_15may02_Scaffold2_revised_gene4180 (ORF: BLASTX 410.0), t_PA0494 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGCACAAGCGACTGAACAAGCTGCTGGTGGCCAATCGCGGCGAGATCGCCGTGCGCATCATCCGCGCCGCG 
CAGGCACTGGGCATTCCCACGGTAGCGGTGTGCAGCGAGGCGGATCGCGATTCGCTGGCCGCGCGGCTGGCC 
GATGAGGTACGTCTGATCGGCCCTGCGCGGGCCGAGCGGAGCTACCTGGATATTGAGGCGATTCTCATGGCG 
GCGCGGGAAACCGGTGCCGACTCGATCCATCCCGGCTACGGTTTCCTCTCCGAGAACCCTGCCTTCGCCGAA 
GCGGTGCAGGCGGCCGGACTGGTCTTCGTCGGTCCGGATGCGCAGACCATCCGCCGCATGGGCGACAAGGCC 
GAGGCGCGGCGTACCGCGATGGCCGCCGGGGTGCCGGTGGTGCCGGGCTCGCCCGGCGAGCTGGACGACCTC 
GACGCGGCGCTGGCCTGCGCCGAAGAGGTCGGCTATCCGCTGCTGGTCAAGGCCTCCGCTGGCGGCGGCGGG 
CGTGGCATCCGTATCGCCCACGACGCCGACGAACTGCGTCGGGAATTCCCCATCGCCCAGCGCGAGGCGCAG 
GCCGCCTTCGGTTCGCCGGCGGTGTACCTGGAGCGCTTCATCCGCCAGGCGCGGCACATCGAAGTGCAGATC 
CTCGGCGATGGCGAGCGCGCGGTGCATCTGTTCGAACGCGAATGCTCGCTGCAGCGGCGGCGCCAGAAGGTC 
TTCGAGGAGGCACCTTCGGCGGCGCTGGACGGCGCGCAGCGCCAGGCCCTCTGCGAGAGCGCGGTGCGCCTG 
GCGCAGAGTCTCGGCTATCGTGGCGCGGGCACCCTGGAATACCTGTTCGACGCGCACAGCGGCGAGTTCTTC 
TTCATCGAGATGAACACCCGTATCCAGGTCGAGCATCCGGTCAGCGAGATGGTCACCGGCATCGACCTGGTC 
CAGGCCATGCTGCGCATCGCCGCCGGCGAGGCGCTGCCCTGGCGCCAGGAGGACATTCGCCTGAACGGCGCG 
GCGCTGGAGATGCGGATCAACGCCGAAGACCCGGCGCGCAATTTCTTCCCCAGCCCCGGCACCGTGGAGCGC 
CTGGAATGGCCGCAGGGCGAGGGCGTGCGAGTGGACAGCCACCTGTATCCCGGCTACCGGGTGCCGCCGTAC 
TACGATTCGTTGCTGGCCAAGCTGATCGTCCATGGTCGCGACCGCGACGAAGCGTTCGCCCGCGCGCGCCAG 
GCGCTGGAGCGCACCGTGCTGGCCGGCATGGCCACTACCCTGCCGCTGCACCGCTGGCTGCTCGCCGATGCG 
CGGGTACAGGCCGCGCAGTTCGATACCGCTACCCTGGAAACCTGGCTCGCCGAGCGGACCGCCGCCGCGCAG 
GAGGTTTGA