ViewGene

Locus Name:
GeneID:
Location:

GeneID: 1087

TrivialName: PA14_27990

AnnotatorUID:

Modification Date/Time: 2006-04-06 13:01:23

LocusName: PA14_27990

PAO1 Ortholog Locus: PA2794

Sequence Length: 1317

Protein Length: 438

Start: 2422054

Stop: 2423370

Strand: +

Type:

ChromosomeID: 2

Status: ACTIVE

Frame Discrepancy: FALSE

Missense Discrepancy: FALSE

Comments:
Homology: gb|AAG06182.1|AE004707_1 (AE004707) hypothetical protein [Pseudomonas aeruginosa PAO1] Identities = 435/438 (99%), Positives = 436/438 (99%)

Sequence:

ATGAATACTTATTTTGATATTCCGCATCGGTTAGTGGGAAAGGCTCTGTATGAATCATATTATGATCATTTT
GGCCAAATGGATATATTGTCAGATGGAGGTTTGTACCTAATATATAGGCGGGCAACAGAGCATGTAGGTGGT
AGTGATGGGCGTGTTGTTTTCAGTAAACTGGAAGGTGGTATTTGGAGTGCGCCTACAATAGTTGCCCAGGCG
GGAGGACAGGATTTTCGAGATGTAGCTGGTGGGACGATGCCTAGCGGAAGGATCGTCGCGGCCTCGACGGTT
TATGAAACAGGAGAGGTGAAGGTCTATGTATCTGATGATTCAGGTGTGACATGGGTACATAAATTCACATTG
GCTAGAGGTGGGGCGGATTATAATTTTGCTCATGGAAAAAGTTTTCAAGTAGGGGCGCGCTATGTGATTCCT
CTTTACGCGGCGACGGGAGTCAATTATGAACTGAAATGGCTAGAGTCTTCTGATGGCGGAGAAACGTGGGGC
GAAGGAAGCACGATCTACAGCGGGAACACACCATACAATGAGACTTCTTACCTTCCTGTGGGAGATGGCGTA
ATTCTGGCTGTAGCCAGAGTAGGATCTGGTGCCGGAGGAGCGTTACGTCAGTTTATAAGTCTGGACGACGGC
GGCACATGGACTGATCAGGGTAATGTGACTGCACAAAATGGTGACTCTACCGATATTCTCGTAGCCCCTTCT
CTCTCCTATGTTTATTCTGAGGGAGGTACACCACATGTAGTTCTCTTGTACACGAACAGAACGACTCATTTT
TGTTATTACAGAACAATCCTGCTGGCGAAAGCCGTAGCAGGCTCCTCCGGCTGGACGGAGCGTGTTCCTGTG
TATAGTGCGCCAGCCGTCTCCGGTTATACTAGTCAAGTCGTTTTGGGAGGTCGGAGAATACTGGGTAATCTA
TTCAGGGAGACATCTTCTACGACGTCGGGAGCTTATCAGTTTGAAGTGTATCTGGGAGGAGTCCCGGATTTT
GAGTCAGACTGGTTTTCTGTTTCTTCAAATAGTTTGTATACCCTGAGTCATGGACTCCAGAGGTCGCCGCGT
CGGGTGGTCGTTGAGTTTGCAAGGTCATCGAGTCCATCAACATGGAACATTGTCATGCCCAGTTATTTCAAT
GATGGAGGGCATAAAGGCAGTGGGGCTCAGGTTGAAGTGGGTAGCTTGAATATTCGGCTTGGAACTGGAGCG
GCAGTATGGGGCACGGGATATTTCGGAGGAATCGACAATAGTGCCACGACTCGATTCGCTACCGGGTATTAT
CGGGTCAGAGCATGGATTTAG

Translation:

MNTYFDIPHRLVGKALYESYYDHFGQMDILSDGGLYLIYRRATEHVGGSDGRVVFSKLEGGIWSAPTIVAQA
GGQDFRDVAGGTMPSGRIVAASTVYETGEVKVYVSDDSGVTWVHKFTLARGGADYNFAHGKSFQVGARYVIP
LYAATGVNYELKWLESSDGGETWGEGSTIYSGNTPYNETSYLPVGDGVILAVARVGSGAGGALRQFISLDDG
GTWTDQGNVTAQNGDSTDILVAPSLSYVYSEGGTPHVVLLYTNRTTHFCYYRTILLAKAVAGSSGWTERVPV
YSAPAVSGYTSQVVLGGRRILGNLFRETSSTTSGAYQFEVYLGGVPDFESDWFSVSSNSLYTLSHGLQRSPR
RVVVEFARSSSPSTWNIVMPSYFNDGGHKGSGAQVEVGSLNIRLGTGAAVWGTGYFGGIDNSATTRFATGYY
RVRAWI*

AnnotationID:1096 GeneID:1087

AnnotatorUID: diggins

Modification Date/Time: 2005-04-06 03:03:48

Gene Name:

Confidence Code: 3

GeneProduct: putative sialidase

Cell Localization: ()

Synonyms: PA2794

Cell Localization Confidence Code: 5

MolecularFunction:

Functional Category: (20) Putative enzymes

Alternate Gene Product Name:

Functional Category Confidence Code: 5

COGs:

Secondary Functional Category(ies):

EC Number:

Status: ACTIVE

Pathway:

Homology:

Structural Features:

Genomic Context:

Comment:

ReferenceID:2177

Author/Investigator(s): GenNotator

Title:

PubMed:

MedLine:

Source:

Reference Type: BLASTP

Data:

URL:

ReferenceID:19319

Author/Investigator(s): GenNotator

Title: CDD Search

PubMed:

MedLine:

Source:

Reference Type: RPSBLAST

Data:

URL:

ReferenceID:36240

Author/Investigator(s):

Title: CDD Search

PubMed:

MedLine:

Source:

Reference Type: Misc (text/plain)

Data: 1087_cdd.html

URL:

Homologs By Global Alignment

Gene ID:1087

Identity:

10%

20%

30%

40%

50%

60%

70%

80%

90%

100%

HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score

1959 PA2794_tr translation of PA2794 438 99.31 99.54 0 2303.0

67073 gb|AAG06182.1|AE004707_1 (AE004707) hypothetical protein PA2794 [Pseudomonas aeruginosa PAO1] 438 99.31 99.54 0 2303.0

67074 gb|AAF60322.2| (AF236853) sialidase [Pseudomonas aeruginosa] 438 99.31 99.54 0 2303.0

GC ORFID: `44089`	How Found: `BLASTX`
GC_TrimmedSeqID: `69`	Blast Result ID
Subject Sequence Name: `t_PA2794`	Glimmer Score:
Start: `2531872`	Stop: `2530556`
Length: `1317`
Start Codon: `ATG`	Truncated Start:
Stop Codon: `TAG`	Truncated Stop:
Homolog: `t_PA2794 translation of PA2794`	Homolog Bit Score `891.0`
Other Homologs:
GC ORF Sequence
ATGAATACTTATTTTGATATTCCGCATCGGTTAGTGGGAAAGGCTCTGTATGAATCATATTATGATCATTTT GGCCAAATGGATATATTGTCAGATGGAGGTTTGTACCTAATATATAGGCGGGCAACAGAGCATGTAGGTGGT AGTGATGGGCGTGTTGTTTTCAGTAAACTGGAAGGTGGTATTTGGAGTGCGCCTACAATAGTTGCCCAGGCG GGAGGACAGGATTTTCGAGATGTAGCTGGTGGGACGATGCCTAGCGGAAGGATCGTCGCGGCCTCGACGGTT TATGAAACAGGAGAGGTGAAGGTCTATGTATCTGATGATTCAGGTGTGACATGGGTACATAAATTCACATTG GCTAGAGGTGGGGCGGATTATAATTTTGCTCATGGAAAAAGTTTTCAAGTAGGGGCGCGCTATGTGATTCCT CTTTACGCGGCGACGGGAGTCAATTATGAACTGAAATGGCTAGAGTCTTCTGATGGCGGAGAAACGTGGGGC GAAGGAAGCACGATCTACAGCGGGAACACACCATACAATGAGACTTCTTACCTTCCTGTGGGAGATGGCGTA ATTCTGGCTGTAGCCAGAGTAGGATCTGGTGCCGGAGGAGCGTTACGTCAGTTTATAAGTCTGGACGACGGC GGCACATGGACTGATCAGGGTAATGTGACTGCACAAAATGGTGACTCTACCGATATTCTCGTAGCCCCTTCT CTCTCCTATGTTTATTCTGAGGGAGGTACACCACATGTAGTTCTCTTGTACACGAACAGAACGACTCATTTT TGTTATTACAGAACAATCCTGCTGGCGAAAGCCGTAGCAGGCTCCTCCGGCTGGACGGAGCGTGTTCCTGTG TATAGTGCGCCAGCCGTCTCCGGTTATACTAGTCAAGTCGTTTTGGGAGGTCGGAGAATACTGGGTAATCTA TTCAGGGAGACATCTTCTACGACGTCGGGAGCTTATCAGTTTGAAGTGTATCTGGGAGGAGTCCCGGATTTT GAGTCAGACTGGTTTTCTGTTTCTTCAAATAGTTTGTATACCCTGAGTCATGGACTCCAGAGGTCGCCGCGT CGGGTGGTCGTTGAGTTTGCAAGGTCATCGAGTCCATCAACATGGAACATTGTCATGCCCAGTTATTTCAAT GATGGAGGGCATAAAGGCAGTGGGGCTCAGGTTGAAGTGGGTAGCTTGAATATTCGGCTTGGAACTGGAGCG GCAGTATGGGGCACGGGATATTTCGGAGGAATCGACAATAGTGCCACGACTCGATTCGCTACCGGGTATTAT CGGGTCAGAGCATGGATTTAG