ViewGene
Locus Name:
GeneID:
Location:

GeneID:1085
TrivialName: PA14_59100
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_59100
PAO1 Ortholog Locus:
Sequence Length:1326
Protein Length:441
Start: 5262925
Stop: 5264250
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAP84225.1| (AY273869) conserved hypothetical protein [Pseudomonas aeruginosa]
Identities = 441/441 (100%), Positives = 441/441 (100%)
Sequence:
ATGAGGCTGTCGCGCTTTCCCATTTCGACACTGCTGGACTCGGCCTCGGGGCATCTCGAGGCCCATTTGTAT
AAGAAGCGGCTTGCTGCCGAAAGCGGCGAACCGCTGGCTCAACAATATTCCGGCATCATTTTCAGCGGCAAT
CCTCATGAAACCGTTCCACGGCGCCTCCTCCTGGATAAGCGTCTTACTCCGCTGGAGCGGAACTGCTGGCAA
GTTTTCCGCTTGCTCATCAACGACGACGGACTGACCGCGTTCCCGACATACGAGCAACTGCGCCCCTATCTC
GGTATGCAGCCGGGCAAGATCGCCTCGCGCGAAACCATCGCCAAGGCACTCACGGTCCTTCGTCTGACCCGC
TGGCTCAGCCTCGGCCGACGCCTGCGCAACGACCTCAACGGACAGGTCCAGGGCAACGTTTACATCCTTCAC
GACGAGCCTGTCTCTCCAGCCGAAGCCTTGGAGCTGGACACCGACTACATGCAGTTGCTGAGCCAATCCACC
GGTCACGGCAACCGAGCCATACGCGAAATCGGGCAGATCATCTGGCGGGAGTTCAGGGATGATCCGGACGTG
GGTCGCCGCCTCCCTACCCATCTGGAGAAGCTCGAGGGACGCTTGAACCACCAGCAATGGGCTATCGATAGT
CAGCTCGAAGCGGATCCAGCGGCAGAGTTCGGCATCCGAACTCTGTCGGATTTACCTCATTCCACCCCGAGT
TCGGATGCCGAACTCAGTGAAATCAGCGGCAAGCAATGCGCTCTACCGCTGAGTTCGGATACCGAACCCCGA
CAGAATCCGCCGAGTACGCCCTTGGTTCGGATGCCGAACTCATATAGTACGTATACATACAAACAAGATTCT
GTATGTAAAAAGCCAGTACAACCGCGAGCACGCGAGGAAGCCCATCCGAACTGGCAGGATCTCCTGCACGCA
CTGGAGGCCGAGCAACGGATCCAGGCAGTAAGCGCGCTCAGACGGGTGTCCGAGGATCTTCGGCTACCCATC
ATCGAGCAGTGGCAGCACCGTTGTGCCGGCGGAACAGTCAGCAATCCGTTCGGCTACCTCATGACGCTCATC
CAGCGTGCAGTCCAGGGCAAGTTCAACGCTTCTTGGGCTCCGGAAGAACCGGCTGAGCGAACCATCCCCGCA
ACGGAACGCCCCATTCGTGCTCCGGCACCATCAAGCCCCATAGCGCCTACACAGCCTCAGGTCCAGCCCCGG
GGGGATACCCGGACAGGGAGCGAGGTCCTCAGCCGGCTCAAGGACCTCATTCGGCCCAGGCACGGATCGAGC
GTGCCATCCGAGCGGGGTGATGATTCATGA
Translation:
MRLSRFPISTLLDSASGHLEAHLYKKRLAAESGEPLAQQYSGIIFSGNPHETVPRRLLLDKRLTPLERNCWQ
VFRLLINDDGLTAFPTYEQLRPYLGMQPGKIASRETIAKALTVLRLTRWLSLGRRLRNDLNGQVQGNVYILH
DEPVSPAEALELDTDYMQLLSQSTGHGNRAIREIGQIIWREFRDDPDVGRRLPTHLEKLEGRLNHQQWAIDS
QLEADPAAEFGIRTLSDLPHSTPSSDAELSEISGKQCALPLSSDTEPRQNPPSTPLVRMPNSYSTYTYKQDS
VCKKPVQPRAREEAHPNWQDLLHALEAEQRIQAVSALRRVSEDLRLPIIEQWQHRCAGGTVSNPFGYLMTLI
QRAVQGKFNASWAPEEPAERTIPATERPIRAPAPSSPIAPTQPQVQPRGDTRTGSEVLSRLKDLIRPRHGSS
VPSERGDDS*
AnnotationID:1094GeneID:1085
AnnotatorUID: diggins
Modification Date/Time: 2006-01-30 22:10:17
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
CDD Search: No hits above 0.01 threshold.






   
Genomic Context:






   
Comment:


















    ReferenceID:2173




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:19315




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:1085
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
67001
                           gb|AAP84225.1|
                           (AY273869) conserved hypothetical protein [Pseudomonas aeruginosa]
                           441
                           99.99
                           99.99
                           0
                           2304.0
     

     
     
67003
                           gb|AAN62198.1|AF440523_105
                           (AF440523) conserved hypothetical protein [Pseudomonas aeruginosa]
                           467
                           37.68
                           51.60
                           81
                           707.0
     

     
     
67002
                           gb|AAF84589.1|AE004000_6
                           (AE004000) hypothetical protein [Xylella fastidiosa 9a5c]
                           462
                           36.79
                           51.94
                           65
                           712.0
     

     
     
67004
                           gb|AAM37061.1|
                           (AE011858) conserved hypothetical protein [Xanthomonas axonopodis pv. citri str. 306]
                           461
                           34.49
                           51.84
                           74
                           643.0
     

     






      

          
GC ORFID: 44087How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_RL100Glimmer Score: 

          
Start: 4526604Stop: 4527929

          
Length: 1326


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_RL100 441 Homolog: XF1781 / Hypothetical protein / X.fastidiosa / 9a5c (AAF84589) translation of RL100Homolog Bit Score 892.0

          
Other Homologs:  psyr_15may02_Scaffold10_revised_gene1574 (ORF: BLASTX 370.0), t_RL100 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAGGCTGTCGCGCTTTCCCATTTCGACACTGCTGGACTCGGCCTCGGGGCATCTCGAGGCCCATTTGTAT 
AAGAAGCGGCTTGCTGCCGAAAGCGGCGAACCGCTGGCTCAACAATATTCCGGCATCATTTTCAGCGGCAAT 
CCTCATGAAACCGTTCCACGGCGCCTCCTCCTGGATAAGCGTCTTACTCCGCTGGAGCGGAACTGCTGGCAA 
GTTTTCCGCTTGCTCATCAACGACGACGGACTGACCGCGTTCCCGACATACGAGCAACTGCGCCCCTATCTC 
GGTATGCAGCCGGGCAAGATCGCCTCGCGCGAAACCATCGCCAAGGCACTCACGGTCCTTCGTCTGACCCGC 
TGGCTCAGCCTCGGCCGACGCCTGCGCAACGACCTCAACGGACAGGTCCAGGGCAACGTTTACATCCTTCAC 
GACGAGCCTGTCTCTCCAGCCGAAGCCTTGGAGCTGGACACCGACTACATGCAGTTGCTGAGCCAATCCACC 
GGTCACGGCAACCGAGCCATACGCGAAATCGGGCAGATCATCTGGCGGGAGTTCAGGGATGATCCGGACGTG 
GGTCGCCGCCTCCCTACCCATCTGGAGAAGCTCGAGGGACGCTTGAACCACCAGCAATGGGCTATCGATAGT 
CAGCTCGAAGCGGATCCAGCGGCAGAGTTCGGCATCCGAACTCTGTCGGATTTACCTCATTCCACCCCGAGT 
TCGGATGCCGAACTCAGTGAAATCAGCGGCAAGCAATGCGCTCTACCGCTGAGTTCGGATACCGAACCCCGA 
CAGAATCCGCCGAGTACGCCCTTGGTTCGGATGCCGAACTCATATAGTACGTATACATACAAACAAGATTCT 
GTATGTAAAAAGCCAGTACAACCGCGAGCACGCGAGGAAGCCCATCCGAACTGGCAGGATCTCCTGCACGCA 
CTGGAGGCCGAGCAACGGATCCAGGCAGTAAGCGCGCTCAGACGGGTGTCCGAGGATCTTCGGCTACCCATC 
ATCGAGCAGTGGCAGCACCGTTGTGCCGGCGGAACAGTCAGCAATCCGTTCGGCTACCTCATGACGCTCATC 
CAGCGTGCAGTCCAGGGCAAGTTCAACGCTTCTTGGGCTCCGGAAGAACCGGCTGAGCGAACCATCCCCGCA 
ACGGAACGCCCCATTCGTGCTCCGGCACCATCAAGCCCCATAGCGCCTACACAGCCTCAGGTCCAGCCCCGG 
GGGGATACCCGGACAGGGAGCGAGGTCCTCAGCCGGCTCAAGGACCTCATTCGGCCCAGGCACGGATCGAGC 
GTGCCATCCGAGCGGGGTGATGATTCATGA