ViewGene
Locus Name:
GeneID:
Location:

GeneID:1083
TrivialName: PA14_72690
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_72690
PAO1 Ortholog Locus:PA5508
Sequence Length:1332
Protein Length:443
Start: 6472805
Stop: 6474136
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG08893.1|AE004963_6 (AE004963) probable glutamine synthetase [Pseudomonas aeruginosa PAO1]
Identities = 439/443 (99%), Positives = 439/443 (99%)
Sequence:
GTGAACCGCCTGCAGCCGGTACGCCTGGTCAGCTTCGTCACCACCGACCTGGCCGGCATCACCCGCGGGCGC
TCGCTGCCCCTGGCGACCCTGGAAGAGCAACTGGCCAGCGGTTGCGGCTGGGTACCGGCGAACAGCTCGCTG
ACCCCGCAGGACCTGATCGACGAGAGCAGCCCCTGGGGCAGCCACGGCGACCTGCGCCTGCTGCCCGACCCG
AACAGCCGGGTGCGCGTCGAGCAGGGTCCCGACGCCGCTGCGCCGGCGCTCGACTACCTGCACGGCAACCTG
GTGGAAACCGACGGCACGCCGTGGCCGGCCTGCCCGCGCGGCCTGCTGCTGGCCGAGGTGGAACGCTATCGC
GACAGCGGCCTGCAGGTCATCGCGGCGTTCGAACACGAATTCAGCCTGCTCGGCCTGCCCGGCGAGCGTCCG
GCCGCGGCGTTTTCGCTGCAGGCCCAGCGTGCCGCCGGGCAGTTCCCCGGCTGGCTGGTCAGCGCCCTGGCC
CAGGCCGGCACCGAGCCGGAGATGTTCCTCCCCGAATACGGCCAGCGCCAGTACGAGGTCACCTGCCGCCCG
GCGCAGGGCGTGGCCGCCGCCGACCGCGCGGTGAACGTCCGCGAGGTCACTCGCGAAGTGGCGCGGCAGATG
GGCCTGCGTACCTGCTTCGCACCGCTGCCGGCACCCGGCGCGGTGACCAACGGGGTACACCTGCACCTGAGC
CTGCAACATGCCGACGGCAGCCCGCTGCTGTACGAGCCCGGTCGACCCAACGATCTCTCCGAACTCGGCGAG
CACTGGGCCGCCGGCGTGCTCGCGCACCTGCCGGCGCTGTGCGCGCTGACCGCGCCTACCGCCGCCTCCTAC
CTGCGCCTGAAACCCCACCACTGGAGCGCCGCCTACGCCTGCCTGGGACTGCGCAACCGCGAAGCGGCGCTG
CGCATCTGCCCGGTGGTGAGCGTCGGCGGCAAGCCGCTGGGCAAGCAGTACAACCTGGAATTCCGGCCGATG
GACGCCACCGCCTGTCCGCACCTGGCGATGGCCGCGGTGCTGATCGCCGGCCGCCTGGGCATCGAACGACGC
CTGCCGCTGCGCGCCCTGGCCGATGTCGATCCGCACGGCCTCAGCGACGAAGAGCGCCAGGCCCGCGGCATC
CAGGCCCTGCCGGCGACCCTCGGCGATGCGCTCGACTGCCTGCAGCGCGACGAGACGCTCTGCGCCGAGCTG
CCAAAGCCGCTGCTGGACACCTACCTCGCCATGAAGCGCCACGAACTGGCACTGACGGCGGGCCTTTCCGAC
GACGACCTGTGCCGCCACTATGCCGAGCTTTACTGA
Translation:
MNRLQPVRLVSFVTTDLAGITRGRSLPLATLEEQLASGCGWVPANSSLTPQDLIDESSPWGSHGDLRLLPDP
NSRVRVEQGPDAAAPALDYLHGNLVETDGTPWPACPRGLLLAEVERYRDSGLQVIAAFEHEFSLLGLPGERP
AAAFSLQAQRAAGQFPGWLVSALAQAGTEPEMFLPEYGQRQYEVTCRPAQGVAAADRAVNVREVTREVARQM
GLRTCFAPLPAPGAVTNGVHLHLSLQHADGSPLLYEPGRPNDLSELGEHWAAGVLAHLPALCALTAPTAASY
LRLKPHHWSAAYACLGLRNREAALRICPVVSVGGKPLGKQYNLEFRPMDATACPHLAMAAVLIAGRLGIERR
LPLRALADVDPHGLSDEERQARGIQALPATLGDALDCLQRDETLCAELPKPLLDTYLAMKRHELALTAGLSD
DDLCRHYAELY*
AnnotationID:1092GeneID:1083
AnnotatorUID: diggins
Modification Date/Time: 2005-03-21 09:09:21
Gene Name:
Confidence Code:3
GeneProduct:putative glutamine synthetase
Cell Localization:()
Synonyms:PA5508
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(2) Amino acid biosynthesis and metabolism
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG0174,pfam00120
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>emb|CAC47158.1| (AL591791) PUTATIVE GLUTAMINE SYNTHETASE PROTEIN [Sinorhizobium
           meliloti]
          Length = 432

 Score =  314 bits (804), Expect = 8e-85
 Identities = 172/429 (40%), Positives = 252/429 (58%), Gaps = 5/429 (1%)






 
Structural Features:
COG0174, GlnA, Glutamine synthetase [Amino acid transport and metabolism]
CD-Length = 443 residues,  97.3% aligned
Score =  345 bits (887), Expect = 5e-96
Identities = 150/452 (33%), Positives = 203/452 (44%), Gaps = 35/452 (7%)

pfam00120, Gln-synt_C, Glutamine synthetase, catalytic domain.
CD-Length = 260 residues, 100.0% aligned
Score =  223 bits (570), Expect = 3e-59
Identities = 86/266 (32%), Positives = 110/266 (41%), Gaps = 19/266 (7%)






   
Genomic Context:






   
Comment:


















    ReferenceID:14277




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:19311




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:33279




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:1083_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:1083
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
1950
                           PA5508_tr
                           translation of PA5508
                           443
                           99.09
                           99.09
                           0
                           2304.0
     

     
     
66977
                           gb|AAG08893.1|AE004963_6
                           (AE004963) probable glutamine synthetase [Pseudomonas aeruginosa PAO1]
                           443
                           98.87
                           99.09
                           0
                           2301.0
     

     
     
66978
                           emb|CAC47158.1|
                           (AL591791) PUTATIVE GLUTAMINE SYNTHETASE PROTEIN [Sinorhizobium meliloti]
                           447
                           38.92
                           57.27
                           19
                           809.0
     

     






      

          
GC ORFID: 44085How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA5508Glimmer Score: 

          
Start: 5736494Stop: 5737825

          
Length: 1332


          
Start Codon: GTGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA5508 translation of PA5508Homolog Bit Score 892.0

          
Other Homologs:  t_PA5508 (ORF: GLIMMER)

          
GC ORF Sequence

           
GTGAACCGCCTGCAGCCGGTACGCCTGGTCAGCTTCGTCACCACCGACCTGGCCGGCATCACCCGCGGGCGC 
TCGCTGCCCCTGGCGACCCTGGAAGAGCAACTGGCCAGCGGTTGCGGCTGGGTACCGGCGAACAGCTCGCTG 
ACCCCGCAGGACCTGATCGACGAGAGCAGCCCCTGGGGCAGCCACGGCGACCTGCGCCTGCTGCCCGACCCG 
AACAGCCGGGTGCGCGTCGAGCAGGGTCCCGACGCCGCTGCGCCGGCGCTCGACTACCTGCACGGCAACCTG 
GTGGAAACCGACGGCACGCCGTGGCCGGCCTGCCCGCGCGGCCTGCTGCTGGCCGAGGTGGAACGCTATCGC 
GACAGCGGCCTGCAGGTCATCGCGGCGTTCGAACACGAATTCAGCCTGCTCGGCCTGCCCGGCGAGCGTCCG 
GCCGCGGCGTTTTCGCTGCAGGCCCAGCGTGCCGCCGGGCAGTTCCCCGGCTGGCTGGTCAGCGCCCTGGCC 
CAGGCCGGCACCGAGCCGGAGATGTTCCTCCCCGAATACGGCCAGCGCCAGTACGAGGTCACCTGCCGCCCG 
GCGCAGGGCGTGGCCGCCGCCGACCGCGCGGTGAACGTCCGCGAGGTCACTCGCGAAGTGGCGCGGCAGATG 
GGCCTGCGTACCTGCTTCGCACCGCTGCCGGCACCCGGCGCGGTGACCAACGGGGTACACCTGCACCTGAGC 
CTGCAACATGCCGACGGCAGCCCGCTGCTGTACGAGCCCGGTCGACCCAACGATCTCTCCGAACTCGGCGAG 
CACTGGGCCGCCGGCGTGCTCGCGCACCTGCCGGCGCTGTGCGCGCTGACCGCGCCTACCGCCGCCTCCTAC 
CTGCGCCTGAAACCCCACCACTGGAGCGCCGCCTACGCCTGCCTGGGACTGCGCAACCGCGAAGCGGCGCTG 
CGCATCTGCCCGGTGGTGAGCGTCGGCGGCAAGCCGCTGGGCAAGCAGTACAACCTGGAATTCCGGCCGATG 
GACGCCACCGCCTGTCCGCACCTGGCGATGGCCGCGGTGCTGATCGCCGGCCGCCTGGGCATCGAACGACGC 
CTGCCGCTGCGCGCCCTGGCCGATGTCGATCCGCACGGCCTCAGCGACGAAGAGCGCCAGGCCCGCGGCATC 
CAGGCCCTGCCGGCGACCCTCGGCGATGCGCTCGACTGCCTGCAGCGCGACGAGACGCTCTGCGCCGAGCTG 
CCAAAGCCGCTGCTGGACACCTACCTCGCCATGAAGCGCCACGAACTGGCACTGACGGCGGGCCTTTCCGAC 
GACGACCTGTGCCGCCACTATGCCGAGCTTTACTGA