ViewGene
Locus Name:
GeneID:
Location:

GeneID:1082
TrivialName: PA14_09750
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_09750
PAO1 Ortholog Locus:PA4186
Sequence Length:1320
Protein Length:439
Start: 840448
Stop: 839129
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG07573.1|AE004835_2 (AE004835) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 436/439 (99%), Positives = 439/439 (100%)
Sequence:
ATGACGAAAGTAACCCACCTCCCGGCCGACGACCGTTCCTGCGGCTGGTACCACCTCAGCCCGCCGCGGCGG
CCGAAGCCGGCCCACTACGGCAGGAGCGCCGCCCGCTGGGTGGTGGTCGGCGCCGGCTTCACCGGCCTCGCC
GCCGCGCGCCAGCTGGCGCTGCATTTTCCCGACGAGGAGATCGTCCTGGTCGAGGCCCAGGAAGTCGGCTTC
GGTACCGCCGGGCGCAACGCCGGCTTCGCCATCGACCTGCCCCACGACATCGGCGCCGACGACTACATCGGC
GACATAGCGACCGCCCGGATCGGCCTGAAGCTCAATCTCGCCGGCCAGTCGCTGCTCCGCGAACAGGTGCAG
CGCCATGCCATCGACTGCCAGATGAAGGCCTGCGGCAAGTACCAGGCGGCCGTCGAGGCGCGCGGCGTGGCT
GTGCTCGACGCCTACCGGCGCGGCCTCGATCGGCTCGGCCAGGCCTACGAGGTGATCGAGGCGGACGACCTC
CCGGGACACATCGGCACCGCTTTCTATCGCAAGGCCCTGTTCACCCCCGGTACCCTGCTGGTGCAGCCCTCG
GCCCTGGTCAAGGGCCTGGCCGACAGCCTGCCGGGCAACGTCAGCCTCTACGAACACACACCGATCACCGCC
GTGGAATATGGCGACAGGACCCTGCTGAGCCATCCCCACGGCAGCATCCTGGCCGACCGCCTGGTCCTCGCC
AACAACGCCTTCGGCATGAGCTTCGGCTTCCTCCAGGGGCGGATGCTGCCGATCTTCACCTACGCCAGCCTG
ACCCGGCCGCTCGAGGCCGAGGAGCAGGCCCGCCTCGGCGGGCGCCCCTACTGGGGCCTGATCCCGGCCGAC
CCTTACGGCACCACGGTGAGGCGTACCCCGGACAACCGCCTGCTGATCCGCAACAGCTTCAGTTTCAACCCT
GACGGACGCAGCGCCGGGAAGTACCTTGAGCGCTTCGCCGTACGCCATCGCGCCTCGTTCCGCCAGCGCTTC
CCGATGCTCCCGGAAGTCGGCTTCGACTACACCTGGGGCGGCTCGCTGGCGCTGTCGAGGAACCACATGGGG
CACTTCGGCGAGCTGGCGCCCAACGTCTATGGCGCCCTGTGCTGCAACGGCCTGGGGGTAACCCGCGGGACC
GTCACCGGGAAGCTGCTGGCCGACTGGCTGGCGGGCGAACGCAACGAGCTGATCGACTTCCTGCTGCGCGCG
CCCGGTCCCAGCGGCAATCCACCCGAACCACTCCTTTCCCTTGGCGTGAACCTCAACCTGAGGTGGGGGCAG
TATCGAGCAGGTAGAGAAAGCTAG
Translation:
MTKVTHLPADDRSCGWYHLSPPRRPKPAHYGRSAARWVVVGAGFTGLAAARQLALHFPDEEIVLVEAQEVGF
GTAGRNAGFAIDLPHDIGADDYIGDIATARIGLKLNLAGQSLLREQVQRHAIDCQMKACGKYQAAVEARGVA
VLDAYRRGLDRLGQAYEVIEADDLPGHIGTAFYRKALFTPGTLLVQPSALVKGLADSLPGNVSLYEHTPITA
VEYGDRTLLSHPHGSILADRLVLANNAFGMSFGFLQGRMLPIFTYASLTRPLEAEEQARLGGRPYWGLIPAD
PYGTTVRRTPDNRLLIRNSFSFNPDGRSAGKYLERFAVRHRASFRQRFPMLPEVGFDYTWGGSLALSRNHMG
HFGELAPNVYGALCCNGLGVTRGTVTGKLLADWLAGERNELIDFLLRAPGPSGNPPEPLLSLGVNLNLRWGQ
YRAGRES*
AnnotationID:1091GeneID:1082
AnnotatorUID: diggins
Modification Date/Time: 2005-03-31 08:08:34
Gene Name:
Confidence Code:3
GeneProduct:putative oxidoreductase
Cell Localization:()
Synonyms:PA4186
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(20) Putative enzymes
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG0665
Secondary Functional Category(ies):amino acid transport and metabolism
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>emb|CAD15820.1| (AL646068) PUTATIVE OXIDOREDUCTASE PROTEIN [Ralstonia solanacearum]
          Length = 387

 Score =  601 bits (1549), Expect = e-171
 Identities = 288/386 (74%), Positives = 333/386 (86%)

>gb|AAN70935.1|AE016737_6 (AE016794) oxidoreductase-related protein [Pseudomonas putida
           KT2440]
          Length = 442

 Score =  352 bits (902), Expect = 3e-96
 Identities = 186/443 (41%), Positives = 261/443 (58%), Gaps = 7/443 (1%)






 
Structural Features:
COG0665, DadA, Glycine/D-amino acid oxidases (deaminating) 
[Amino acid transport and metabolism]
CD-Length = 387 residues,  97.9% aligned
Score =  160 bits (404), Expect = 4e-40
Identities = 98/390 (25%), Positives = 146/390 (37%), Gaps = 22/390 (5%)






   
Genomic Context:






   
Comment:


















    ReferenceID:2167




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:19309




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:36874




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:1082_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:1082
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
1949
                           PA4186_tr
                           translation of PA4186
                           439
                           99.31
                           99.99
                           0
                           2306.0
     

     
     
66974
                           gb|AAG07573.1|AE004835_2
                           (AE004835) hypothetical protein PA4186 [Pseudomonas aeruginosa PAO1]
                           439
                           99.31
                           99.99
                           0
                           2306.0
     

     
     
66975
                           emb|CAD15820.1|
                           (AL646068) PUTATIVE OXIDOREDUCTASE PROTEIN [Ralstonia solanacearum]
                           439
                           65.60
                           75.85
                           52
                           1547.0
     

     
     
66976
                           gb|AAN70935.1|AE016737_6
                           (AE016794) oxidoreductase-related protein [Pseudomonas putida KT2440]
                           452
                           42.47
                           58.18
                           23
                           919.0
     

     






      

          
GC ORFID: 44084How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA4186Glimmer Score: 

          
Start: 4113489Stop: 4114808

          
Length: 1320


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TAGTruncated Stop: 

          
Homolog: t_PA4186 translation of PA4186Homolog Bit Score 892.0

          
Other Homologs:  t_PA4186 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGACGAAAGTAACCCACCTCCCGGCCGACGACCGTTCCTGCGGCTGGTACCACCTCAGCCCGCCGCGGCGG 
CCGAAGCCGGCCCACTACGGCAGGAGCGCCGCCCGCTGGGTGGTGGTCGGCGCCGGCTTCACCGGCCTCGCC 
GCCGCGCGCCAGCTGGCGCTGCATTTTCCCGACGAGGAGATCGTCCTGGTCGAGGCCCAGGAAGTCGGCTTC 
GGTACCGCCGGGCGCAACGCCGGCTTCGCCATCGACCTGCCCCACGACATCGGCGCCGACGACTACATCGGC 
GACATAGCGACCGCCCGGATCGGCCTGAAGCTCAATCTCGCCGGCCAGTCGCTGCTCCGCGAACAGGTGCAG 
CGCCATGCCATCGACTGCCAGATGAAGGCCTGCGGCAAGTACCAGGCGGCCGTCGAGGCGCGCGGCGTGGCT 
GTGCTCGACGCCTACCGGCGCGGCCTCGATCGGCTCGGCCAGGCCTACGAGGTGATCGAGGCGGACGACCTC 
CCGGGACACATCGGCACCGCTTTCTATCGCAAGGCCCTGTTCACCCCCGGTACCCTGCTGGTGCAGCCCTCG 
GCCCTGGTCAAGGGCCTGGCCGACAGCCTGCCGGGCAACGTCAGCCTCTACGAACACACACCGATCACCGCC 
GTGGAATATGGCGACAGGACCCTGCTGAGCCATCCCCACGGCAGCATCCTGGCCGACCGCCTGGTCCTCGCC 
AACAACGCCTTCGGCATGAGCTTCGGCTTCCTCCAGGGGCGGATGCTGCCGATCTTCACCTACGCCAGCCTG 
ACCCGGCCGCTCGAGGCCGAGGAGCAGGCCCGCCTCGGCGGGCGCCCCTACTGGGGCCTGATCCCGGCCGAC 
CCTTACGGCACCACGGTGAGGCGTACCCCGGACAACCGCCTGCTGATCCGCAACAGCTTCAGTTTCAACCCT 
GACGGACGCAGCGCCGGGAAGTACCTTGAGCGCTTCGCCGTACGCCATCGCGCCTCGTTCCGCCAGCGCTTC 
CCGATGCTCCCGGAAGTCGGCTTCGACTACACCTGGGGCGGCTCGCTGGCGCTGTCGAGGAACCACATGGGG 
CACTTCGGCGAGCTGGCGCCCAACGTCTATGGCGCCCTGTGCTGCAACGGCCTGGGGGTAACCCGCGGGACC 
GTCACCGGGAAGCTGCTGGCCGACTGGCTGGCGGGCGAACGCAACGAGCTGATCGACTTCCTGCTGCGCGCG 
CCCGGTCCCAGCGGCAATCCACCCGAACCACTCCTTTCCCTTGGCGTGAACCTCAACCTGAGGTGGGGGCAG 
TATCGAGCAGGTAGAGAAAGCTAG