ViewGene
Locus Name:
GeneID:
Location:

GeneID:1080
TrivialName: PA14_38130
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_38130
PAO1 Ortholog Locus:PA2041
Sequence Length:1371
Protein Length:456
Start: 3401978
Stop: 3400608
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG05429.1|AE004630_6 (AE004630) probable amino acid permease [Pseudomonas aeruginosa PAO1]
Identities = 453/456 (99%), Positives = 455/456 (99%)
Sequence:
ATGTCGAATCCTCCCCCCACCGCAGAACGAACCCAGCTTCGCAAGTCCCTCAAGCTGTGGCAGATCGTCATG
ATCGGGTTGGCCTACCTGACCCCGATGACCGTCTTCGACACCTTCGGCATCGTATCCGGGATTTCCCAGGGA
CACGTGCCCACCGCCTACCTGCTGGCCCTCGCCGGCGTGCTGTTCACCGCGATCAGCTACGGCAAGCTGGTC
CGCCAGTTCCCCACCGCAGGCTCGGCCTATACCTACGCGCAACGGGCGATCAATCCCCATGTCGGCTTCATG
GTCGGCTGGTCGTCGCTGCTGGACTACCTGTTCCTGCCGATGATCAACGCGCTGCTGGCGAAGATCTACCTG
ACCGCACTGTTCCCCGAGGTCGCGCCATGGGTCTGGGTGGTGATGTTCGTGCTGATCATGACCCTCATCAAC
ATCAAGAGCGTGAACCTGGTCGCCAATTTCAACACCGTCTTCGTGCTGGTCCAACTGGCGATCATCGTGGTC
TTCATCGGCCTGGTGATCCATGGCCTGAACAACGGGGAGGGGACCGCCACGGTGCTCAGCACCCAGCCGTTC
TTCTCCGAGCACGCGCATCTCTCGGCGATGGTGGCGGGGGCGACGATCCTCTGCTTTTCCTTCCTCGGTTTC
GACGCGGTGACCACGCTGTCCGAGGAAACCCGCGACGCCGCCAAGGTGATCCCGCGGGCGATCTTCCTCACC
GCGCTGTACGGCGGGGTGATCTTCATCACCGTGTCGTATTTCCTGCAGTCCTATTTCCCGACCAACGTACGC
TTCAAGGAACCCGACGCGGCGCTGCCGGAAATCGCCCTGTACGTCGGCGGCAAGCTGTTCCAGTCGATCTTC
CTCTGCGCCACCTTCATCAATACCCTGGCGTCTGGCCTGGCCTCCCAGGCCAGCGTGTCGCGCCTGCTGTAC
GTGATGGGGCGGGACAATGTGCTGCCGGAGCGGATCTTCGGCTTCGTCCATCCGAAATGGCGTACGCCGTCG
ATCAACGTGCTGATCGTGGGCATGGTGGCGCTCTCGGCGATCTCCTTCGACCTGGTGACGGCGACCGCGCTG
ATCAATTTCGGCGCCCTGGTGGCCTTCACCTTCGTCAATCTCTCGGTGATCGTGCATTTCTATGTGCGCGGC
GGGCGCAACCGCAGCCTCAAGGAGCATTTCCACTACCTGGTCCTGCCGCTGCTCGGCGCGGCCATCGTCGCG
GTGCTCTGGCTCAACCTGGAAAGCACCTCGCTGGTGATGGGGCTGATCTGGGCCGGGCTGGGCTTCGGCTAC
CTGTTCTACCTGACCCGCAGCTTCAGCCGTCCGCCGCCGCGCTTCCAGGAGAGCGAACTGAGCCCGACCCAG
TGA
Translation:
MSNPPPTAERTQLRKSLKLWQIVMIGLAYLTPMTVFDTFGIVSGISQGHVPTAYLLALAGVLFTAISYGKLV
RQFPTAGSAYTYAQRAINPHVGFMVGWSSLLDYLFLPMINALLAKIYLTALFPEVAPWVWVVMFVLIMTLIN
IKSVNLVANFNTVFVLVQLAIIVVFIGLVIHGLNNGEGTATVLSTQPFFSEHAHLSAMVAGATILCFSFLGF
DAVTTLSEETRDAAKVIPRAIFLTALYGGVIFITVSYFLQSYFPTNVRFKEPDAALPEIALYVGGKLFQSIF
LCATFINTLASGLASQASVSRLLYVMGRDNVLPERIFGFVHPKWRTPSINVLIVGMVALSAISFDLVTATAL
INFGALVAFTFVNLSVIVHFYVRGGRNRSLKEHFHYLVLPLLGAAIVAVLWLNLESTSLVMGLIWAGLGFGY
LFYLTRSFSRPPPRFQESELSPTQ*
AnnotationID:1089GeneID:1080
AnnotatorUID: diggins
Modification Date/Time: 2005-03-03 05:05:32
Gene Name:
Confidence Code:3
GeneProduct:putative lysine-specific permease
Cell Localization:()
Synonyms:ycjJ
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(27) Transport of small molecules
Alternate Gene Product Name:putative amino acid/amine transport protein
Functional Category Confidence Code:5
COGs:COG0531,COG0833,COG1113
Secondary Functional Category(ies):amino acid biosynthesis and metabolims
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAP16794.1| (AE016982) putative amino acid/amine transport protein [Shigella
           flexneri 2a str. 2457T]
          Length = 461

 Score =  691 bits (1784), Expect = 0.0
 Identities = 339/435 (77%), Positives = 387/435 (88%)

>gb|AAG56508.1|AE005377_1 (AE005377) putative amino acid/amine transport protein [Escherichia
           coli O157:H7 EDL933]
          Length = 461

 Score =  691 bits (1782), Expect = 0.0
 Identities = 338/435 (77%), Positives = 387/435 (88%)

>emb|CAC90379.1| (AJ414149) Amino acid permease [Yersinia pestis CO92]
          Length = 463

 Score =  609 bits (1570), Expect = e-173
 Identities = 293/448 (65%), Positives = 368/448 (82%)








 
Structural Features:
COG0531, PotE, Amino acid transporters [Amino acid transport and metabolism]
CD-Length = 466 residues,  98.3% aligned
Score =  139 bits (351), Expect = 6e-34
Identities = 114/463 (24%), Positives = 205/463 (44%), Gaps = 20/463 (4%)

COG0833, LysP, Amino acid transporters [Amino acid transport and metabolism]
CD-Length = 541 residues,  84.1% aligned
Score =  100 bits (250), Expect = 4e-22
Identities = 98/460 (21%), Positives = 177/460 (38%), Gaps = 32/460 (6%)

COG1113, AnsP, Gamma-aminobutyrate permease and related permeases 
[Amino acid transport and metabolism]
CD-Length = 462 residues,  99.4% aligned
Score =  101 bits (254), Expect = 2e-22
Identities = 105/471 (22%), Positives = 188/471 (39%), Gaps = 39/471 (8%)







   
Genomic Context:






   
Comment:


















    ReferenceID:2163




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:19305




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:32662




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:1080_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:1080
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
1944
                           PA2041_tr
                           translation of PA2041
                           456
                           99.34
                           99.78
                           0
                           2304.0
     

     
     
66936
                           gb|AAG05429.1|AE004630_6
                           (AE004630) probable amino acid permease [Pseudomonas aeruginosa PAO1]
                           456
                           99.34
                           99.78
                           0
                           2304.0
     

     
     
66937
                           gb|AAP16794.1|
                           (AE016982) putative amino acid/amine transport protein [Shigella flexneri 2a str. 2457T]
                           463
                           74.08
                           85.52
                           9
                           1781.0
     

     
     
66940
                           gb|AAG56508.1|AE005377_1
                           (AE005377) putative amino acid/amine transport protein [Escherichia coli O157:H7 EDL933]
                           463
                           73.86
                           85.52
                           9
                           1779.0
     

     
     
66943
                           dbj|BAA14856.1|
                           (D90767) Lysine-specific permease [Escherichia coli]
                           458
                           71.83
                           82.31
                           27
                           1720.0
     

     






      

          
GC ORFID: 44082How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA2041Glimmer Score: 

          
Start: 1551932Stop: 1553302

          
Length: 1371


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA2041 translation of PA2041Homolog Bit Score 892.0

          
Other Homologs:  t_PA3597 (ORF: BLASTX 377.0), t_PA0322 (ORF: BLASTX 351.0), t_PA2041 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGTCGAATCCTCCCCCCACCGCAGAACGAACCCAGCTTCGCAAGTCCCTCAAGCTGTGGCAGATCGTCATG 
ATCGGGTTGGCCTACCTGACCCCGATGACCGTCTTCGACACCTTCGGCATCGTATCCGGGATTTCCCAGGGA 
CACGTGCCCACCGCCTACCTGCTGGCCCTCGCCGGCGTGCTGTTCACCGCGATCAGCTACGGCAAGCTGGTC 
CGCCAGTTCCCCACCGCAGGCTCGGCCTATACCTACGCGCAACGGGCGATCAATCCCCATGTCGGCTTCATG 
GTCGGCTGGTCGTCGCTGCTGGACTACCTGTTCCTGCCGATGATCAACGCGCTGCTGGCGAAGATCTACCTG 
ACCGCACTGTTCCCCGAGGTCGCGCCATGGGTCTGGGTGGTGATGTTCGTGCTGATCATGACCCTCATCAAC 
ATCAAGAGCGTGAACCTGGTCGCCAATTTCAACACCGTCTTCGTGCTGGTCCAACTGGCGATCATCGTGGTC 
TTCATCGGCCTGGTGATCCATGGCCTGAACAACGGGGAGGGGACCGCCACGGTGCTCAGCACCCAGCCGTTC 
TTCTCCGAGCACGCGCATCTCTCGGCGATGGTGGCGGGGGCGACGATCCTCTGCTTTTCCTTCCTCGGTTTC 
GACGCGGTGACCACGCTGTCCGAGGAAACCCGCGACGCCGCCAAGGTGATCCCGCGGGCGATCTTCCTCACC 
GCGCTGTACGGCGGGGTGATCTTCATCACCGTGTCGTATTTCCTGCAGTCCTATTTCCCGACCAACGTACGC 
TTCAAGGAACCCGACGCGGCGCTGCCGGAAATCGCCCTGTACGTCGGCGGCAAGCTGTTCCAGTCGATCTTC 
CTCTGCGCCACCTTCATCAATACCCTGGCGTCTGGCCTGGCCTCCCAGGCCAGCGTGTCGCGCCTGCTGTAC 
GTGATGGGGCGGGACAATGTGCTGCCGGAGCGGATCTTCGGCTTCGTCCATCCGAAATGGCGTACGCCGTCG 
ATCAACGTGCTGATCGTGGGCATGGTGGCGCTCTCGGCGATCTCCTTCGACCTGGTGACGGCGACCGCGCTG 
ATCAATTTCGGCGCCCTGGTGGCCTTCACCTTCGTCAATCTCTCGGTGATCGTGCATTTCTATGTGCGCGGC 
GGGCGCAACCGCAGCCTCAAGGAGCATTTCCACTACCTGGTCCTGCCGCTGCTCGGCGCGGCCATCGTCGCG 
GTGCTCTGGCTCAACCTGGAAAGCACCTCGCTGGTGATGGGGCTGATCTGGGCCGGGCTGGGCTTCGGCTAC 
CTGTTCTACCTGACCCGCAGCTTCAGCCGTCCGCCGCCGCGCTTCCAGGAGAGCGAACTGAGCCCGACCCAG 
TGA