ViewGene
Locus Name:
GeneID:
Location:

GeneID:1079
TrivialName: PA14_44950
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_44950
PAO1 Ortholog Locus:PA1507
Sequence Length:1368
Protein Length:455
Start: 4007119
Stop: 4008486
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04896.1|AE004579_8 (AE004579) probable transporter [Pseudomonas aeruginosa PAO1]
Identities = 455/455 (100%), Positives = 455/455 (100%)
Sequence:
ATGTCCGTGGTAACTGATCGCCGCATCCCCGACTCGCCCGTAGACCAGCGCCTGCCGCTGACGCAGCTGCTG
CTGGTGGGCTTCCAGCATGTGCTGCTGATGTACGGTGGCGCCGTCGCCGTGCCCCTGATCGTCGGCCAGGCG
GCCGGCCTCTCGCGCGAGGAAATCGCCTTCCTGATCAACGCCGACCTGCTGGTCGCCGGCATCGCCACCCTG
GTCCAGTCGCTGGGCATCGGCCCGATGGGCATCCGCATGCCGGTGATGATGGGCGCCAGCTTCGCCGCCGTC
GGCAGCATGGTGGCGATGGCCGGGATGCCCGGCGTGGGCATCACCGGGATCTTCGGCGCGACCATCGCCGCC
GGCTTCTTCGGCATGCTCATCGCCCCCTTCATGTCGCGCATCGTGCGTTTCTTCCCGCCGCTGGTGACCGGC
ACGGTGATCACCTCGATCGGCATGTGCCTGTTCCCGGTGGCGATCAACTGGGCCGGCGGCGGCAAGGGCGCG
GAAGACTTCGGCTCCCTGCACTTCCTGTTCCTCTCCAGCCTGGTGCTCTGCACCATCCTCCTGATCAACCGC
TTCATGCGCGGTTTCTGGGTCAACATCTCGGTGCTGATGGGCATGGGCCTGGGCTACGCGATCGCCGGCGGC
ATGGGCATGGTCGACCTCGGCGGTCTGGCCGAGCGCCCCTGGTTCGACATCGTCACCCCGCTGCACTTCGGC
GCGCCAACCTTCGACCTGGCGCCGATCCTGTCGATGTGCCTGGTGGTAGTGATCATCTTCGTCGAGTCCACC
GGCATGTTCCTCGCCCTGGGCAAGATCACCGGCCGCGAGATCACCCCGACCGAACTGCGCCGCGGCCTGCTC
TGCGACGCCGGCGCCTCGTTCTTCGCCGGTTTCCTGAACACCTTCACCCATTCCTCGTTCGCCCAGAACATC
GGCCTGGTGCAGATGACCGGGGTGCGCAGCCGCTACGTCACGGTGGCCGCCGCCGGTTTCCTGATCCTCCTC
AGCATGCTGCCCAAGGCCGCCTTCCTGGTCGCCTCGATCCCGCCGGCGGTACTCGGCGGCGCCGGCATCGCC
ATGTTCGGCATGGTCGCCGCCAGCGGCATCCAGATCCTCCACGAGGCCAACATCACCGACCGCCGCAACCAG
TTGCTGGTGGCGGTAAGCATCGGCATGGGCATGGTGCCGGTGGTGCGCCCGGACTTCTTCGCCCGCCTGCCG
GTCTGGATGGAGCCGATCACCCATAGCGGCATCGCCATGACCGCGATCTGGGCGGTGGTGCTAAACCTGCTG
TTCAACATCCTCAGCCGCAACGACCGCAGCCACTTGTGCGGCAGCCACGCGCCGGCGCCCAAGCACTCCTGA
Translation:
MSVVTDRRIPDSPVDQRLPLTQLLLVGFQHVLLMYGGAVAVPLIVGQAAGLSREEIAFLINADLLVAGIATL
VQSLGIGPMGIRMPVMMGASFAAVGSMVAMAGMPGVGITGIFGATIAAGFFGMLIAPFMSRIVRFFPPLVTG
TVITSIGMCLFPVAINWAGGGKGAEDFGSLHFLFLSSLVLCTILLINRFMRGFWVNISVLMGMGLGYAIAGG
MGMVDLGGLAERPWFDIVTPLHFGAPTFDLAPILSMCLVVVIIFVESTGMFLALGKITGREITPTELRRGLL
CDAGASFFAGFLNTFTHSSFAQNIGLVQMTGVRSRYVTVAAAGFLILLSMLPKAAFLVASIPPAVLGGAGIA
MFGMVAASGIQILHEANITDRRNQLLVAVSIGMGMVPVVRPDFFARLPVWMEPITHSGIAMTAIWAVVLNLL
FNILSRNDRSHLCGSHAPAPKHS*
AnnotationID:1088GeneID:1079
AnnotatorUID: diggins
Modification Date/Time: 2005-02-25 07:07:25
Gene Name:
Confidence Code:3
GeneProduct:putative transporter
Cell Localization:()
Synonyms:ygfU
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(27) Transport of small molecules
Alternate Gene Product Name:putative permease
Functional Category Confidence Code:5
COGs:COG2233,pfam00860
Secondary Functional Category(ies):membrane protein
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAN69870.1|AE016626_5 (AE016790) xanthine/uracil permease family protein [Pseudomonas
           putida KT2440]
          Length = 451

 Score =  692 bits (1786), Expect = 0.0
 Identities = 346/443 (78%), Positives = 388/443 (87%), Gaps = 3/443 (0%)

>emb|CAD15825.1| (AL646068) PUTATIVE XANTHINE PERMEASE TRANSMEMBRANE PROTEIN
           [Ralstonia solanacearum]
          Length = 468

 Score =  434 bits (1115), Expect = e-121
 Identities = 223/440 (50%), Positives = 294/440 (66%), Gaps = 15/440 (3%)

>gb|AAN81913.1|AE016766_1 (AE016766) Putative purine permease ygfU [Escherichia coli CFT073]
          Length = 525

 Score =  424 bits (1089), Expect = e-118
 Identities = 218/427 (51%), Positives = 299/427 (70%), Gaps = 2/427 (0%)








 
Structural Features:
COG2233, UraA, Xanthine/uracil permeases 
[Nucleotide transport and metabolism]
CD-Length = 451 residues,  96.7% aligned
Score =  384 bits (987), Expect = 1e-107
Identities = 219/439 (49%), Positives = 283/439 (64%), Gaps = 7/439 (1%)

pfam00860, Xan_ur_permease, Permease family. 
CD-Length = 389 residues,  99.7% aligned
Score =  239 bits (612), Expect = 4e-64
Identities = 162/391 (41%), Positives = 238/391 (60%), Gaps = 12/391 (3%)







   
Genomic Context:






   
Comment:


















    ReferenceID:2161




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:19303




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:37335




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:1079_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:1079
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
1942
                           PA1507_tr
                           translation of PA1507
                           455
                           99.99
                           99.99
                           0
                           2306.0
     

     
     
66902
                           gb|AAG04896.1|AE004579_8
                           (AE004579) probable transporter [Pseudomonas aeruginosa PAO1]
                           455
                           99.99
                           99.99
                           0
                           2306.0
     

     
     
66903
                           gb|AAN69870.1|AE016626_5
                           (AE016790) xanthine/uracil permease family protein [Pseudomonas putida KT2440]
                           458
                           75.98
                           85.15
                           10
                           1789.0
     

     
     
66904
                           emb|CAD15825.1|
                           (AL646068) PUTATIVE XANTHINE PERMEASE TRANSMEMBRANE PROTEIN [Ralstonia solanacearum]
                           472
                           48.30
                           63.98
                           21
                           1117.0
     

     
     
66914
                           dbj|BAC69218.1|
                           (AP005027) putative xanthine permease [Streptomyces avermitilis MA-4680]
                           464
                           45.68
                           61.42
                           22
                           1009.0
     

     






      

          
GC ORFID: 44081How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA1507Glimmer Score: 

          
Start: 946790Stop: 945423

          
Length: 1368


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA1507 translation of PA1507Homolog Bit Score 892.0

          
Other Homologs:  t_PA1507 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGTCCGTGGTAACTGATCGCCGCATCCCCGACTCGCCCGTAGACCAGCGCCTGCCGCTGACGCAGCTGCTG 
CTGGTGGGCTTCCAGCATGTGCTGCTGATGTACGGTGGCGCCGTCGCCGTGCCCCTGATCGTCGGCCAGGCG 
GCCGGCCTCTCGCGCGAGGAAATCGCCTTCCTGATCAACGCCGACCTGCTGGTCGCCGGCATCGCCACCCTG 
GTCCAGTCGCTGGGCATCGGCCCGATGGGCATCCGCATGCCGGTGATGATGGGCGCCAGCTTCGCCGCCGTC 
GGCAGCATGGTGGCGATGGCCGGGATGCCCGGCGTGGGCATCACCGGGATCTTCGGCGCGACCATCGCCGCC 
GGCTTCTTCGGCATGCTCATCGCCCCCTTCATGTCGCGCATCGTGCGTTTCTTCCCGCCGCTGGTGACCGGC 
ACGGTGATCACCTCGATCGGCATGTGCCTGTTCCCGGTGGCGATCAACTGGGCCGGCGGCGGCAAGGGCGCG 
GAAGACTTCGGCTCCCTGCACTTCCTGTTCCTCTCCAGCCTGGTGCTCTGCACCATCCTCCTGATCAACCGC 
TTCATGCGCGGTTTCTGGGTCAACATCTCGGTGCTGATGGGCATGGGCCTGGGCTACGCGATCGCCGGCGGC 
ATGGGCATGGTCGACCTCGGCGGTCTGGCCGAGCGCCCCTGGTTCGACATCGTCACCCCGCTGCACTTCGGC 
GCGCCAACCTTCGACCTGGCGCCGATCCTGTCGATGTGCCTGGTGGTAGTGATCATCTTCGTCGAGTCCACC 
GGCATGTTCCTCGCCCTGGGCAAGATCACCGGCCGCGAGATCACCCCGACCGAACTGCGCCGCGGCCTGCTC 
TGCGACGCCGGCGCCTCGTTCTTCGCCGGTTTCCTGAACACCTTCACCCATTCCTCGTTCGCCCAGAACATC 
GGCCTGGTGCAGATGACCGGGGTGCGCAGCCGCTACGTCACGGTGGCCGCCGCCGGTTTCCTGATCCTCCTC 
AGCATGCTGCCCAAGGCCGCCTTCCTGGTCGCCTCGATCCCGCCGGCGGTACTCGGCGGCGCCGGCATCGCC 
ATGTTCGGCATGGTCGCCGCCAGCGGCATCCAGATCCTCCACGAGGCCAACATCACCGACCGCCGCAACCAG 
TTGCTGGTGGCGGTAAGCATCGGCATGGGCATGGTGCCGGTGGTGCGCCCGGACTTCTTCGCCCGCCTGCCG 
GTCTGGATGGAGCCGATCACCCATAGCGGCATCGCCATGACCGCGATCTGGGCGGTGGTGCTAAACCTGCTG 
TTCAACATCCTCAGCCGCAACGACCGCAGCCACTTGTGCGGCAGCCACGCGCCGGCGCCCAAGCACTCCTGA