ViewGene
Locus Name:
GeneID:
Location:

GeneID:1078
TrivialName: PA14_46110
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_46110
PAO1 Ortholog Locus:PA1418
Sequence Length:1392
Protein Length:463
Start: 4100014
Stop: 4101405
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04807.1|AE004571_6 (AE004571) probable sodium:solute symport protein [Pseudomonas aeruginosa PAO1]
Identities = 462/463 (99%), Positives = 463/463 (100%)
Sequence:
ATGGCCCTCGACATATTCGTCGTTCTGATCTACGCCGCGGGCATGATCGCGCTGGGCTGGTACGGCATGCGC
CGCGCCAAGACCCGCGACGACTACCTGGTGGCCGGCCGCAACCTCGGCCCCGGCTTCTACCTGGGAACCATG
GCCGCCACCGTCCTCGGCGGCGCCTCCACCATCGGCACCGTGCGCCTGGGCTACGTCCATGGCATCTCCGGC
TTCTGGCTGTGCGGCGCGATCGGCCTCGGCATCGTCGGCCTCAGCCTGTTCCTGGCCAAGCCGCTGCTGAAG
CTGAAGATCTACACCGTCACCCAGGTCCTGGAGCGTCGCTACAACCCCGCCGCGCGCCACGCCAGCGCCCTG
ATCATGCTGGTCTACGCACTGATGATCGGCGCCACCTCGACCATCGCCATCGGCACCGTCATGCAGGTCCTG
TTCGGCCTGCCGTTCTGGGTCTCGATCCTGATCGGCGGCGGCGTCGTGGTGCTCTACTCCACCATCGGCGGC
ATGTGGTCGCTGACCCTGACCGACATCGTGCAGTTCCTGATCATGACCGTTGGCCTGGTGTTCCTGCTGATG
CCGCTGTCGATCAACGACGCCGGCGGCTGGGACGCCCTGGTGGCCAAGCTGCCGGCCAGCTACTTCGACTTC
ACCGCGATCGGCTGGGACACCATCGTCACCTACTTCCTGATCTACTTCTTCGGCATCTTCATCGGCCAGGAC
ATCTGGCAGCGGGTGTTCACCGCCCGCAGCGAGACCGTGGCCAAGGTCGCCGGCTCCGCCGCCGGTATCTAC
TGCGTGCTCTACGGCATGGCCGGGGCGCTGATCGGGATGGCCGCCAAGGTCCTGCTGCCGGACCTGGAGAAC
GTCAACAACGCCTTCGCCAGCGTGGTCGAGCACAGCCTGCCGAACGGCATCCGCGGCCTGGTCATCGCCGCC
GCCCTGGCGGCGCTGATGTCCACCGCCAGCGCCGGCCTGCTGGCGGCGTCCACCACCGTCACCCAGGACCTG
CTGCCGCGCCTGCGCCGCGGCCGCGGCCAGTCCGACAACGGCGACGTGCACGAGAACCGCATCGCCACCCTG
CTGCTGGGCCTGGTAGTGCTCGGCATCGCCCTGGTGGTCAGCGACGTGATCAGCGCCCTGACCGTGGCCTAC
AACCTGCTGGTAGGCGGCATGCTGATCCCGCTGATCGGCGCGATCTACTGGAAGCGCGCCAGCACCGCCGGC
GCCATCACCAGCATGACCCTGGGCTTCCTTACCGTGCTGGTGTTCATGATCAAGGACGGCCTCGACGCCAAT
ACGCCGATCTACTACAGCCTGGCGGTCGGCCTGCTCAGCTTCGTCCTGGTCAGCCTGTTCTCGCGGCGCCCG
ACGGGTGTCGCCAGCGCCGCCTGA
Translation:
MALDIFVVLIYAAGMIALGWYGMRRAKTRDDYLVAGRNLGPGFYLGTMAATVLGGASTIGTVRLGYVHGISG
FWLCGAIGLGIVGLSLFLAKPLLKLKIYTVTQVLERRYNPAARHASALIMLVYALMIGATSTIAIGTVMQVL
FGLPFWVSILIGGGVVVLYSTIGGMWSLTLTDIVQFLIMTVGLVFLLMPLSINDAGGWDALVAKLPASYFDF
TAIGWDTIVTYFLIYFFGIFIGQDIWQRVFTARSETVAKVAGSAAGIYCVLYGMAGALIGMAAKVLLPDLEN
VNNAFASVVEHSLPNGIRGLVIAAALAALMSTASAGLLAASTTVTQDLLPRLRRGRGQSDNGDVHENRIATL
LLGLVVLGIALVVSDVISALTVAYNLLVGGMLIPLIGAIYWKRASTAGAITSMTLGFLTVLVFMIKDGLDAN
TPIYYSLAVGLLSFVLVSLFSRRPTGVASAA*
AnnotationID:1087GeneID:1078
AnnotatorUID: diggins
Modification Date/Time: 2005-02-24 07:07:11
Gene Name:
Confidence Code:3
GeneProduct:putative sodium:solute symport protein
Cell Localization:()
Synonyms:PA1418
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(27) Transport of small molecules
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG0591,pfam00474,COG4147
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAN70098.1|AE016649_6 (AE016791) sodium-solute symporter, putative [Pseudomonas putida
           KT2440]
          Length = 459

 Score =  684 bits (1764), Expect = 0.0
 Identities = 342/463 (73%), Positives = 400/463 (86%), Gaps = 4/463 (0%)

>dbj|BAC72996.1| (AP005042) putative sodium:solute symporter [Streptomyces
           avermitilis MA-4680]
          Length = 486

 Score =  486 bits (1252), Expect = e-137
 Identities = 239/453 (52%), Positives = 333/453 (73%), Gaps = 2/453 (0%)








 
Structural Features:
COG0591, PutP, Na+/proline symporter 
[Amino acid transport and metabolism]
CD-Length = 493 residues,  96.3% aligned
Score =  196 bits (499), Expect = 5e-51
Identities = 142/476 (29%), Positives = 222/476 (46%), Gaps = 24/476 (5%)

pfam00474, SSF, Sodium:solute symporter family.
CD-Length = 406 residues, 100.0% aligned
Score =  123 bits (311), Expect = 4e-29
Identities = 93/407 (22%), Positives = 187/407 (45%), Gaps = 23/407 (5%)

COG4147, DhlC, Predicted symporter.
CD-Length = 529 residues,  95.8% aligned
Score =  119 bits (301), Expect = 5e-28
Identities = 105/508 (20%), Positives = 200/508 (39%), Gaps = 53/508 (10%)






   
Genomic Context:






   
Comment:


















    ReferenceID:2159




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:19301




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:37390




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:1078_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:1078
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
1940
                           PA1418_tr
                           translation of PA1418
                           463
                           99.78
                           99.99
                           0
                           2306.0
     

     
     
66898
                           gb|AAG04807.1|AE004571_6
                           (AE004571) probable sodium:solute symport protein [Pseudomonas aeruginosa PAO1]
                           463
                           99.78
                           99.99
                           0
                           2306.0
     

     
     
66899
                           gb|AAN70098.1|AE016649_6
                           (AE016791) sodium-solute symporter, putative [Pseudomonas putida KT2440]
                           463
                           74.29
                           86.60
                           4
                           1769.0
     

     
     
1941
                           PA0287_tr
                           translation of PA0287
                           466
                           56.00
                           73.60
                           8
                           1323.0
     

     
     
66900
                           gb|AAG03676.1|AE004466_10
                           (AE004466) probable sodium:solute symporter [Pseudomonas aeruginosa PAO1]
                           466
                           56.00
                           73.60
                           8
                           1323.0
     

     






      

          
GC ORFID: 44080How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA1418Glimmer Score: 

          
Start: 853895Stop: 852504

          
Length: 1392


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA1418 translation of PA1418Homolog Bit Score 892.0

          
Other Homologs:  t_PA0287 (ORF: BLASTX 514.0), t_PA1418 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGGCCCTCGACATATTCGTCGTTCTGATCTACGCCGCGGGCATGATCGCGCTGGGCTGGTACGGCATGCGC 
CGCGCCAAGACCCGCGACGACTACCTGGTGGCCGGCCGCAACCTCGGCCCCGGCTTCTACCTGGGAACCATG 
GCCGCCACCGTCCTCGGCGGCGCCTCCACCATCGGCACCGTGCGCCTGGGCTACGTCCATGGCATCTCCGGC 
TTCTGGCTGTGCGGCGCGATCGGCCTCGGCATCGTCGGCCTCAGCCTGTTCCTGGCCAAGCCGCTGCTGAAG 
CTGAAGATCTACACCGTCACCCAGGTCCTGGAGCGTCGCTACAACCCCGCCGCGCGCCACGCCAGCGCCCTG 
ATCATGCTGGTCTACGCACTGATGATCGGCGCCACCTCGACCATCGCCATCGGCACCGTCATGCAGGTCCTG 
TTCGGCCTGCCGTTCTGGGTCTCGATCCTGATCGGCGGCGGCGTCGTGGTGCTCTACTCCACCATCGGCGGC 
ATGTGGTCGCTGACCCTGACCGACATCGTGCAGTTCCTGATCATGACCGTTGGCCTGGTGTTCCTGCTGATG 
CCGCTGTCGATCAACGACGCCGGCGGCTGGGACGCCCTGGTGGCCAAGCTGCCGGCCAGCTACTTCGACTTC 
ACCGCGATCGGCTGGGACACCATCGTCACCTACTTCCTGATCTACTTCTTCGGCATCTTCATCGGCCAGGAC 
ATCTGGCAGCGGGTGTTCACCGCCCGCAGCGAGACCGTGGCCAAGGTCGCCGGCTCCGCCGCCGGTATCTAC 
TGCGTGCTCTACGGCATGGCCGGGGCGCTGATCGGGATGGCCGCCAAGGTCCTGCTGCCGGACCTGGAGAAC 
GTCAACAACGCCTTCGCCAGCGTGGTCGAGCACAGCCTGCCGAACGGCATCCGCGGCCTGGTCATCGCCGCC 
GCCCTGGCGGCGCTGATGTCCACCGCCAGCGCCGGCCTGCTGGCGGCGTCCACCACCGTCACCCAGGACCTG 
CTGCCGCGCCTGCGCCGCGGCCGCGGCCAGTCCGACAACGGCGACGTGCACGAGAACCGCATCGCCACCCTG 
CTGCTGGGCCTGGTAGTGCTCGGCATCGCCCTGGTGGTCAGCGACGTGATCAGCGCCCTGACCGTGGCCTAC 
AACCTGCTGGTAGGCGGCATGCTGATCCCGCTGATCGGCGCGATCTACTGGAAGCGCGCCAGCACCGCCGGC 
GCCATCACCAGCATGACCCTGGGCTTCCTTACCGTGCTGGTGTTCATGATCAAGGACGGCCTCGACGCCAAT 
ACGCCGATCTACTACAGCCTGGCGGTCGGCCTGCTCAGCTTCGTCCTGGTCAGCCTGTTCTCGCGGCGCCCG 
ACGGGTGTCGCCAGCGCCGCCTGA