ViewGene

Locus Name:
GeneID:
Location:

GeneID:1077
TrivialName: PA14_73070
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_73070
PAO1 Ortholog Locus:PA5541
Sequence Length:1338
Protein Length:445
Start: 6506363
Stop: 6507700
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG08926.1|AE004966_8 (AE004966) probable dihydroorotase [Pseudomonas aeruginosa PAO1]
Identities = 444/445 (99%), Positives = 445/445 (100%)
Sequence:
ATGCAAAGCCTGCTGATCCGCAATGCCCGGATGGTCAACGAGGGGCAGGTACGCGAAGGCGATCTGCTGGTC
CGCCACGGTCGCATCGAACGCATCGCCGGCTGCCTGGAAAACTGCGGCGCCAGCCGGGAGATCGATGCCGCC
GGACGCTACCTGCTGCCGGGAATGATCGACGACCAGGTGCACTTCCGCGAGCCGGGTTATCCACAGAAGGGC
TCGATCGCCAGCGAATCCCGCGCCGCCGTGGCGGGCGGCATCACCAGTTTCATGGACATGCCCAATACCCGC
CCGGCGACGCTGAGCCTCGAAGCGCTGGCGGAAAAGAAGCGCCTCGCCGCCGCCCATAGCGTGGCCAACTAC
GGTTTCCACTTCGGCGTCAGCCGCGACAACCTCGACACCGTGGCCGCCCTCGATCCACGCGATGTCGCCGCG
GTGAAGGTGTTCATGGGCGCCTCCACCGGCGACATGCTGGTGGACGACCTGCCGACCCTGGAGCGCCTGTTC
GCCAGCGTTCCGACCCTGCTGCTGAGCCATTGCGAAGACACGCCGCGGATCGAAGCCAACCTCGCGCGCTGG
CGACAACGCTTCGGTGAACGTATTCCGGCAGCCGCCCACCCGCGCATTCGCGACGCCGAGGCTTGCTACCGT
TCCACCGCCCTGGCGGTGGAACTGGCGCAACGGCATGGCACGCTGCTGCATGTCCTGCACTTATCCACAGCG
CGTGAACTGGCCCTGTTCGAGGACAAGCCGCTGTGCCAGAAACGCATCACCGCGGAAGTCTGCGTCCACCAT
CTGCTGTTCGACGACAGCGACTACGCCCGCCTCGGCCATCTGCTCAAGTGCAACCCGGCGATCAAGAGCCGC
GAGGACCGCGACGCCCTGCGCAGGGCGCTGGCCGGCAACCGCCTGGACGTGATCGGCACCGACCACGCGCCG
CACGCCTGGGCCGAGAAGCAGCAGGCTTATCCACAGGCGCCGGCCGGCCTGCCACTGGTCCAGCATGCGTTG
CCGGCACTCCTAGAGCTGGTCCGCGAAGGCTGGCTGTCGCTGGCCACCCTGGTGGCGAAGACCAGCCACCGG
GTCGCCGAACTGTTCGCCATCGCCGATCGCGGTTTCCTCCGCGAAGGCTACTGGGCCGACCTGGTGCTGGTC
AGCGAACTGGAGCACCCGGCGCTGGCCAGCGCCATGCCGCTGCTGTCGCGCTGCAACTGGACGCCGTTCCGC
CACCGGGCATTCCACCATCGGATCGATACCACCATCGTCTCCGGGCAGCTCGCCTGGCACGCGGGACGCCTG
TCCGACGATTGCCAGGGACTGCCCCTGCGGTTTTCCCGCTGA
Translation:
MQSLLIRNARMVNEGQVREGDLLVRHGRIERIAGCLENCGASREIDAAGRYLLPGMIDDQVHFREPGYPQKG
SIASESRAAVAGGITSFMDMPNTRPATLSLEALAEKKRLAAAHSVANYGFHFGVSRDNLDTVAALDPRDVAA
VKVFMGASTGDMLVDDLPTLERLFASVPTLLLSHCEDTPRIEANLARWRQRFGERIPAAAHPRIRDAEACYR
STALAVELAQRHGTLLHVLHLSTARELALFEDKPLCQKRITAEVCVHHLLFDDSDYARLGHLLKCNPAIKSR
EDRDALRRALAGNRLDVIGTDHAPHAWAEKQQAYPQAPAGLPLVQHALPALLELVREGWLSLATLVAKTSHR
VAELFAIADRGFLREGYWADLVLVSELEHPALASAMPLLSRCNWTPFRHRAFHHRIDTTIVSGQLAWHAGRL
SDDCQGLPLRFSR*
AnnotationID:1086GeneID:1077
AnnotatorUID: danlee
Modification Date/Time: 2006-01-31 13:01:25
Gene Name:pyrQ
Confidence Code:1
GeneProduct:dihydroorotase
Cell Localization:(1) Cytoplasmic
Synonyms:pyrC2
Cell Localization Confidence Code:3
MolecularFunction:
Functional Category:(18) Nucleotide biosynthesis and metabolism
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG0044
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:
Homology:
>gb|AAM41536.1| (AE012333) dihydroorotase [Xanthomonas campestris pv. campestris
           str. ATCC 33913]
          Length = 449

 Score =  471 bits (1212), Expect = e-132
 Identities = 244/451 (54%), Positives = 305/451 (67%), Gaps = 8/451 (1%)

>gb|AAF83798.1|AE003937_2 (AE003937) dihydroorotase [Xylella fastidiosa 9a5c]
          Length = 449

 Score =  469 bits (1208), Expect = e-131
 Identities = 248/451 (54%), Positives = 302/451 (66%), Gaps = 8/451 (1%)

Structural Features:
COG0044, PyrC, Dihydroorotase and related cyclic amidohydrolases 
[Nucleotide transport and metabolism] 
CD-Length = 430 residues,  98.4% aligned
Score =  405 bits (1041), Expect = 8e-114
Identities = 161/429 (37%), Positives = 229/429 (53%), Gaps = 6/429 (1%)
Genomic Context:
Comment:
ReferenceID:2157
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:19299
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
ReferenceID:33331
Author/Investigator(s):
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:Misc (text/plain)
Data:1077_cdd.html
URL:
ReferenceID:38275
Author/Investigator(s): Brichta DM, Azad KN, Ralli P, O'Donovan GA.
Title: Pseudomonas aeruginosa dihydroorotases: a tale of three pyrCs.
PubMed: 15278241
MedLine:
Source:
Arch Microbiol. 2004 Sep;182(1):7-17. Epub 2004 Jul 28.
Reference Type:
Data:
URL:
Homologs By Global Alignment
Gene ID:1077

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
1939 PA5541_tr translation of PA5541 445 99.77 99.99 0 2308.0
66887 gb|AAG08926.1|AE004966_8 (AE004966) probable dihydroorotase [Pseudomonas aeruginosa PAO1] 445 99.77 99.99 0 2308.0
66889 gb|AAF83798.1|AE003937_2 (AE003937) dihydroorotase [Xylella fastidiosa 9a5c] 451 54.98 66.96 8 1215.0
66890 gb|AAO28167.1| (AE012554) dihydroorotase [Xylella fastidiosa Temecula1] 451 54.98 66.07 8 1209.0
66888 gb|AAM41536.1| (AE012333) dihydroorotase [Xanthomonas campestris pv. campestris str. ATCC 33913] 451 54.10 67.62 8 1219.0
GC ORFID: 44079How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA5541Glimmer Score:
Start: 5770052Stop: 5771389
Length: 1338
Start Codon: ATGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: t_PA5541 translation of PA5541Homolog Bit Score 893.0
Other Homologs: t_PA5541 (ORF: GLIMMER)
GC ORF Sequence
ATGCAAAGCCTGCTGATCCGCAATGCCCGGATGGTCAACGAGGGGCAGGTACGCGAAGGCGATCTGCTGGTC
CGCCACGGTCGCATCGAACGCATCGCCGGCTGCCTGGAAAACTGCGGCGCCAGCCGGGAGATCGATGCCGCC
GGACGCTACCTGCTGCCGGGAATGATCGACGACCAGGTGCACTTCCGCGAGCCGGGTTATCCACAGAAGGGC
TCGATCGCCAGCGAATCCCGCGCCGCCGTGGCGGGCGGCATCACCAGTTTCATGGACATGCCCAATACCCGC
CCGGCGACGCTGAGCCTCGAAGCGCTGGCGGAAAAGAAGCGCCTCGCCGCCGCCCATAGCGTGGCCAACTAC
GGTTTCCACTTCGGCGTCAGCCGCGACAACCTCGACACCGTGGCCGCCCTCGATCCACGCGATGTCGCCGCG
GTGAAGGTGTTCATGGGCGCCTCCACCGGCGACATGCTGGTGGACGACCTGCCGACCCTGGAGCGCCTGTTC
GCCAGCGTTCCGACCCTGCTGCTGAGCCATTGCGAAGACACGCCGCGGATCGAAGCCAACCTCGCGCGCTGG
CGACAACGCTTCGGTGAACGTATTCCGGCAGCCGCCCACCCGCGCATTCGCGACGCCGAGGCTTGCTACCGT
TCCACCGCCCTGGCGGTGGAACTGGCGCAACGGCATGGCACGCTGCTGCATGTCCTGCACTTATCCACAGCG
CGTGAACTGGCCCTGTTCGAGGACAAGCCGCTGTGCCAGAAACGCATCACCGCGGAAGTCTGCGTCCACCAT
CTGCTGTTCGACGACAGCGACTACGCCCGCCTCGGCCATCTGCTCAAGTGCAACCCGGCGATCAAGAGCCGC
GAGGACCGCGACGCCCTGCGCAGGGCGCTGGCCGGCAACCGCCTGGACGTGATCGGCACCGACCACGCGCCG
CACGCCTGGGCCGAGAAGCAGCAGGCTTATCCACAGGCGCCGGCCGGCCTGCCACTGGTCCAGCATGCGTTG
CCGGCACTCCTAGAGCTGGTCCGCGAAGGCTGGCTGTCGCTGGCCACCCTGGTGGCGAAGACCAGCCACCGG
GTCGCCGAACTGTTCGCCATCGCCGATCGCGGTTTCCTCCGCGAAGGCTACTGGGCCGACCTGGTGCTGGTC
AGCGAACTGGAGCACCCGGCGCTGGCCAGCGCCATGCCGCTGCTGTCGCGCTGCAACTGGACGCCGTTCCGC
CACCGGGCATTCCACCATCGGATCGATACCACCATCGTCTCCGGGCAGCTCGCCTGGCACGCGGGACGCCTG
TCCGACGATTGCCAGGGACTGCCCCTGCGGTTTTCCCGCTGA