ViewGene
Locus Name:
GeneID:
Location:

GeneID:1076
TrivialName: PA14_70330
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_70330
PAO1 Ortholog Locus:PA5327
Sequence Length:1329
Protein Length:442
Start: 6272595
Stop: 6271267
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG08712.1|AE004945_6 (AE004945) probable oxidoreductase [Pseudomonas aeruginosa PAO1]
Identities = 440/442 (99%), Positives = 441/442 (99%)
Sequence:
ATGGTGGGAAACCCCGCGCTGGCGGAGTTGCTCCGCGCACCGCGCCTGATTCCCTGGCGCAACTGGTCCGGC
GCGCAAAGCTGCCTGCCCCTGGCGCGGGAGGCACCGAAAGACCTCGACGAACTGGTCCGGGTCATCCGCCAG
GCGTCCGGCAGGATCCGCCCGGTGGGCTCCGGCCATTCGTTCAGCGCGTTGGTCCCGACCGACGGCACCCTG
CTCTCACTCGCCTACTTCAGCGGCTTGCTCAGCCACGACAGCGCGACCCTCCAGGCCGAGTTCGGCGGCGGT
ACGCCGATGTCGCAGATGGGCGCTCCGCTCAAGGAGATCGGCCAGGCGCTGGTGAACATGGCCGACATCGAT
TACCAGACCCTGGCTGGCGCCATCGCTACTTCCACCCATGGCACCGGGGTCGGCTTCGGTTCCTATTCCGCC
CAGGTTCGCGGTCTGCAACTGGTCACCGCGAGCGGCGAGGTGCTCGAGTGCGACGCCAAGCGCAACGTGGAG
GTGTTCGATGCCGCGCGGGTCTCGCTGGGGGCGCTGGGCGTCGTGACCCGGGTGCGCCTGCAGAACCGCGCG
GCCTACCGCCTGCGTGAACGGCAGTGGATCGCCCGGACCGAGGAATTGCTGGAGGACGTGGAGAAGAACACG
CGCGAGAACCAGCACTGGGAGATGCTGGTGGTGACCCACTCCGACTACGCCCTGTCGATCGCCCTCAACGAG
ACCGACGAGCCGAAGACCCCGCCCCTGGACCCGGCGAAGGAAGGCGGCAACGAGTTCGTCGGCCTGATCGAA
GGTCTCGACAAGTACCTCAGCGACTTCCCGGAGACCCGCCGCACCCTGCTCAACAGCCTGCGCCATTTCGCC
CGCTTCGACGAGCGGGTCGACGATTCCTATGCGGTCTACGCCAACGTGCGCAACGTGCGCTTCAACGAGATG
GAGTATTCGGTCCCCGCCGAGCATGGCCCCGCCTGCCTGCGGGAAATCCTCGCGCTGATCCGCGACAAGGAC
CTGCGCACCTGGTTTCCCATCGAGTACCGCTACGTGAAGGCCGACGACATTCCCCTGAGCATGTTCGAGGGC
CGCGACAGTTGTTCCATTTCCGTGCATCAGCACTACAGCATGGACCACCACAACTTCTTCGCCGCGGTGGAA
CCGATCTTCTGGAAATACGCCGGGCGTCCGCACTGGGGCAAGCTGCATGGCCTCAACGCGCACCAGTTGCAG
GGGCTCTATCCGCGCTGGAAGGCGTTCGCCGAGGTGCGCCAGGCGCTGGATCCCCGCGGGCGGTTCCTCAAT
GCGCACCTCTCTTCCATCCTGGGCGTGACCTGA
Translation:
MVGNPALAELLRAPRLIPWRNWSGAQSCLPLAREAPKDLDELVRVIRQASGRIRPVGSGHSFSALVPTDGTL
LSLAYFSGLLSHDSATLQAEFGGGTPMSQMGAPLKEIGQALVNMADIDYQTLAGAIATSTHGTGVGFGSYSA
QVRGLQLVTASGEVLECDAKRNVEVFDAARVSLGALGVVTRVRLQNRAAYRLRERQWIARTEELLEDVEKNT
RENQHWEMLVVTHSDYALSIALNETDEPKTPPLDPAKEGGNEFVGLIEGLDKYLSDFPETRRTLLNSLRHFA
RFDERVDDSYAVYANVRNVRFNEMEYSVPAEHGPACLREILALIRDKDLRTWFPIEYRYVKADDIPLSMFEG
RDSCSISVHQHYSMDHHNFFAAVEPIFWKYAGRPHWGKLHGLNAHQLQGLYPRWKAFAEVRQALDPRGRFLN
AHLSSILGVT*
AnnotationID:1085GeneID:1076
AnnotatorUID: diggins
Modification Date/Time: 2005-03-16 14:02:53
Gene Name:
Confidence Code:3
GeneProduct:putative oxidoreductase
Cell Localization:()
Synonyms:PA5327
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(12) Energy metabolism
Alternate Gene Product Name:putative FAD dehydrogenase
Functional Category Confidence Code:5
COGs:COG0277
Secondary Functional Category(ies):putative enzyme
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
COG0277, GlcD, FAD/FMN-containing dehydrogenases [Energy production and conversion]
CD-Length = 459 residues,  96.1% aligned
Score =  150 bits (380), Expect = 2e-37
Identities = 90/449 (20%), Positives = 144/449 (32%), Gaps = 33/449 (7%)






   
Genomic Context:






   
Comment:


















    ReferenceID:2155




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:19297




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:34777




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:1076_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:1076
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
1938
                           PA5327_tr
                           translation of PA5327
                           442
                           99.54
                           99.77
                           0
                           2307.0
     

     
     
66884
                           gb|AAG08712.1|AE004945_6
                           (AE004945) probable oxidoreductase [Pseudomonas aeruginosa PAO1]
                           442
                           99.54
                           99.77
                           0
                           2307.0
     

     
     
66885
                           gb|AAK23201.1|
                           (AE005798) oxidoreductase, FAD-binding [Caulobacter crescentus CB15]
                           480
                           38.95
                           54.37
                           50
                           857.0
     

     
     
66886
                           gb|AAQ58715.1|
                           (AE016913) probable FAD-dependent oxidoreductase [Chromobacterium violaceum ATCC 12472]
                           469
                           38.59
                           53.51
                           33
                           815.0
     

     






      

          
GC ORFID: 44078How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA5327Glimmer Score: 

          
Start: 5536284Stop: 5534956

          
Length: 1329


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA5327 translation of PA5327Homolog Bit Score 893.0

          
Other Homologs:  t_PA5327 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGGTGGGAAACCCCGCGCTGGCGGAGTTGCTCCGCGCACCGCGCCTGATTCCCTGGCGCAACTGGTCCGGC 
GCGCAAAGCTGCCTGCCCCTGGCGCGGGAGGCACCGAAAGACCTCGACGAACTGGTCCGGGTCATCCGCCAG 
GCGTCCGGCAGGATCCGCCCGGTGGGCTCCGGCCATTCGTTCAGCGCGTTGGTCCCGACCGACGGCACCCTG 
CTCTCACTCGCCTACTTCAGCGGCTTGCTCAGCCACGACAGCGCGACCCTCCAGGCCGAGTTCGGCGGCGGT 
ACGCCGATGTCGCAGATGGGCGCTCCGCTCAAGGAGATCGGCCAGGCGCTGGTGAACATGGCCGACATCGAT 
TACCAGACCCTGGCTGGCGCCATCGCTACTTCCACCCATGGCACCGGGGTCGGCTTCGGTTCCTATTCCGCC 
CAGGTTCGCGGTCTGCAACTGGTCACCGCGAGCGGCGAGGTGCTCGAGTGCGACGCCAAGCGCAACGTGGAG 
GTGTTCGATGCCGCGCGGGTCTCGCTGGGGGCGCTGGGCGTCGTGACCCGGGTGCGCCTGCAGAACCGCGCG 
GCCTACCGCCTGCGTGAACGGCAGTGGATCGCCCGGACCGAGGAATTGCTGGAGGACGTGGAGAAGAACACG 
CGCGAGAACCAGCACTGGGAGATGCTGGTGGTGACCCACTCCGACTACGCCCTGTCGATCGCCCTCAACGAG 
ACCGACGAGCCGAAGACCCCGCCCCTGGACCCGGCGAAGGAAGGCGGCAACGAGTTCGTCGGCCTGATCGAA 
GGTCTCGACAAGTACCTCAGCGACTTCCCGGAGACCCGCCGCACCCTGCTCAACAGCCTGCGCCATTTCGCC 
CGCTTCGACGAGCGGGTCGACGATTCCTATGCGGTCTACGCCAACGTGCGCAACGTGCGCTTCAACGAGATG 
GAGTATTCGGTCCCCGCCGAGCATGGCCCCGCCTGCCTGCGGGAAATCCTCGCGCTGATCCGCGACAAGGAC 
CTGCGCACCTGGTTTCCCATCGAGTACCGCTACGTGAAGGCCGACGACATTCCCCTGAGCATGTTCGAGGGC 
CGCGACAGTTGTTCCATTTCCGTGCATCAGCACTACAGCATGGACCACCACAACTTCTTCGCCGCGGTGGAA 
CCGATCTTCTGGAAATACGCCGGGCGTCCGCACTGGGGCAAGCTGCATGGCCTCAACGCGCACCAGTTGCAG 
GGGCTCTATCCGCGCTGGAAGGCGTTCGCCGAGGTGCGCCAGGCGCTGGATCCCCGCGGGCGGTTCCTCAAT 
GCGCACCTCTCTTCCATCCTGGGCGTGACCTGA