ViewGene
Locus Name:
GeneID:
Location:

GeneID:1074
TrivialName: PA14_21620
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_21620
PAO1 Ortholog Locus:PA3279
Sequence Length:1323
Protein Length:440
Start: 1874675
Stop: 1875997
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG06667.1|AE004750_5 (AE004750) Phosphate-specific outer membrane porin OprP precursor [Pseudomonas aeruginosa PAO1]
Identities = 439/440 (99%), Positives = 439/440 (99%)
Sequence:
ATGATTCGCAGACACTCGTGCAAAGGGGTGGGGAGCAGTGTTGCCTGGAGTTTGCTGGGCCTGGCGATTTCC
GCGCAGAGCCTGGCCGGGACCGTGACCACCGACGGTGCCGACATCGTGATCAAGACCAAGGGCGGCCTCGAA
GTCGCCACCACCGACAAGGAATTCAGCTTCAAGCTCGGCGGCCGCCTACAGGCCGACTACGGCCGCTTCGAC
GGCTACTACACGAACAACGGCAATACCGCCGATGCCGCCTACTTCCGCCGCGCCTACCTGGAGTTCGGCGGC
ACCGTCTACCGTGACTGGAAGTACCAGATCAACTACGACCTGTCGCGCAACGTCGGCAACGACAGCGCCGGC
TACTTCGACGAAGCCTCGGTCACCTATACCGGCTTCAATCCGGTCAACCTGAAGTTCGGCCGCTTCTACACC
GACTTCGGCCTGGAAAAGGCCACCAGCTCCAAATGGGTCACCGCGCTGGAGCGCAACCTCACCTACGACATC
GCCGACTGGGTCAACGACAACGTCGGTACCGGTATCCAGGCCAGCTCGGTGGTGGGCGGCATGGCCTTCCTC
TCGGGCAGCGTGTTCAGCGAGAACAACAACGATACCGACGGCGACAGCGTCAAGCGCTACAACCTGCGCGGC
GTGTTCGCGCCGCTGCACGAGCCGGGCAACGTGGTGCACCTGGGCCTGCAATACGCCTATCGCGACCTGGAG
GACAGCGCGGTGGATACCCGGATCCGCCCGCGCATGGGCATGCGCGGCGTCTCCACCAATGGCGGCAACGAT
GCCGGCAGCAATGGCAACCGTGGCCTGTTCGGCGGCAGTTCGGCAGTCGAGGGGCTGTGGAAGGACGACTCG
GTCTGGGGCCTGGAAGGCGCCTGGGCGCTGGGTGCCTTCTCGGCCCAGGCCGAGTACCTGCGGCGCACGGTC
AAGGCCGAGCGCGACCGCGAGGATCTCAAGGCCTCCGGCTATTACGCGCAACTGGCCTACACCCTCACCGGC
GAGCCGCGCCTCTACAAGCTGGACGGCGCCAAGTTCGACACCATCAAGCCGGAGAACAAGGAAATCGGCGCC
TGGGAGCTGTTCTACCGCTACGACTCGATCAAGGTCGAGGATGACAACATCGTCGTCGACAGCGCCACCCGC
GAGGTCGGCGACGCCAAGGGCAAGACCCATACCCTGGGCGTCAACTGGTACGCCAACGAGGCGGTGAAGGTT
TCCGCCAACTACGTCAAGGCGAAGACCGACAAGATCAGCAATGCCAACGGCGACGATAGCGGCGATGGCCTG
GTGATGCGCCTGCAGTACGTGTTCTGA
Translation:
MIRRHSCKGVGSSVAWSLLGLAISAQSLAGTVTTDGADIVIKTKGGLEVATTDKEFSFKLGGRLQADYGRFD
GYYTNNGNTADAAYFRRAYLEFGGTVYRDWKYQINYDLSRNVGNDSAGYFDEASVTYTGFNPVNLKFGRFYT
DFGLEKATSSKWVTALERNLTYDIADWVNDNVGTGIQASSVVGGMAFLSGSVFSENNNDTDGDSVKRYNLRG
VFAPLHEPGNVVHLGLQYAYRDLEDSAVDTRIRPRMGMRGVSTNGGNDAGSNGNRGLFGGSSAVEGLWKDDS
VWGLEGAWALGAFSAQAEYLRRTVKAERDREDLKASGYYAQLAYTLTGEPRLYKLDGAKFDTIKPENKEIGA
WELFYRYDSIKVEDDNIVVDSATREVGDAKGKTHTLGVNWYANEAVKVSANYVKAKTDKISNANGDDSGDGL
VMRLQYVF*
AnnotationID:1083GeneID:1074
AnnotatorUID: diggins
Modification Date/Time: 2005-04-15 06:06:46
Gene Name:oprP
Confidence Code:1
GeneProduct:phosphate-specific outer membrane porin OprP precursor
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(27) Transport of small molecules
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:pfam07396,COG3746
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAN65671.1|AE016194_1 (AE016774) porin P [Pseudomonas putida KT2440]
          Length = 429

 Score =  669 bits (1725), Expect = 0.0
 Identities = 312/427 (73%), Positives = 370/427 (86%), Gaps = 3/427 (0%)








 
Structural Features:
pfam07396, Porin_O_P, Phosphate-selective porin O and P. 
CD-Length = 361 residues, 100.0% aligned
Score =  339 bits (870), Expect = 5e-94
Identities = 152/394 (38%), Positives = 193/394 (48%), Gaps = 46/394 (11%)

COG3746, OprP, Phosphate-selective porin 
[Inorganic ion transport and metabolism]
CD-Length = 426 residues, 100.0% aligned
Score =  521 bits (1344), Expect = 5e-149
Identities = 279/442 (63%), Positives = 306/442 (69%), Gaps = 18/442 (4%)







   
Genomic Context:






   
Comment:


















    ReferenceID:2151




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:19293




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:32269




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:1074_cdd.html


    		




 
URL:

















    ReferenceID:33989




  
Author/Investigator(s):
        Liao X, Charlebois I, Ouellet C, Morency MJ, Dewar K, Lightfoot J, Foster J, Siehnel R, Schweizer H, Lam JS, Hancock RE, Levesque RC.





  
Title:
        Physical mapping of 32 genetic markers on the Pseudomonas aeruginosa PAO1 chromosome.




  
PubMed:
        8581173


MedLine:
        




    
Source:
Microbiology. 1996 Jan;142 ( Pt 1):79-86.






    
Reference Type:Journal 







    
Data:


    		




 
URL:http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=8581173

















    ReferenceID:33990




  
Author/Investigator(s):
        Siehnel RJ, Worobec EA, Hancock RE.





  
Title:
        Cloning of the Pseudomonas aeruginosa outer membrane porin protein P gene: evidence for a linked region of DNA homology.




  
PubMed:
        2834340


MedLine:
        




    
Source:
J Bacteriol. 1988 May;170(5):2312-8.






    
Reference Type:Journal 







    
Data:


    		




 
URL:http://www.pubmedcentral.nih.gov/articlerender.fcgi?tool=pubmed&pubmedid=2834340

















    ReferenceID:33991




  
Author/Investigator(s):
        Siehnel R, Martin NL, Hancock RE.





  
Title:
        Sequence and relatedness in other bacteria of the Pseudomonas aeruginosa oprP gene coding for the phosphate-specific porin P.




  
PubMed:
        1697017


MedLine:
        




    
Source:
Mol Microbiol. 1990 May;4(5):831-8.






    
Reference Type:Journal 







    
Data:


    		




 
URL:http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=1697017









           
Homologs By Global Alignment 

           

       



     
Gene ID:1074
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
1935
                           PA3279_tr
                           translation of PA3279
                           440
                           99.77
                           99.77
                           0
                           2308.0
     

     
     
66795
                           gb|AAG06667.1|AE004750_5
                           (AE004750) Phosphate-specific outer membrane porin OprP precursor [Pseudomonas aeruginosa PAO1]
                           440
                           99.77
                           99.77
                           0
                           2308.0
     

     
     
66796
                           gb|AAA25913.1|
                           (M86648) oprP [Pseudomonas aeruginosa]
                           440
                           99.09
                           99.31
                           0
                           2292.0
     

     
     
66797
                           emb|CAA37395.1|
                           (X53313) OprP protein [Pseudomonas aeruginosa]
                           440
                           99.09
                           99.31
                           0
                           2292.0
     

     
     
1936
                           PA3280_tr
                           translation of PA3280
                           443
                           72.23
                           84.65
                           8
                           1717.0
     

     






      

          
GC ORFID: 44076How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA3279Glimmer Score: 

          
Start: 3079256Stop: 3077934

          
Length: 1323


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA3279 translation of PA3279Homolog Bit Score 893.0

          
Other Homologs:  t_PA3280 (ORF: BLASTX 662.0), t_PA3279 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGATTCGCAGACACTCGTGCAAAGGGGTGGGGAGCAGTGTTGCCTGGAGTTTGCTGGGCCTGGCGATTTCC 
GCGCAGAGCCTGGCCGGGACCGTGACCACCGACGGTGCCGACATCGTGATCAAGACCAAGGGCGGCCTCGAA 
GTCGCCACCACCGACAAGGAATTCAGCTTCAAGCTCGGCGGCCGCCTACAGGCCGACTACGGCCGCTTCGAC 
GGCTACTACACGAACAACGGCAATACCGCCGATGCCGCCTACTTCCGCCGCGCCTACCTGGAGTTCGGCGGC 
ACCGTCTACCGTGACTGGAAGTACCAGATCAACTACGACCTGTCGCGCAACGTCGGCAACGACAGCGCCGGC 
TACTTCGACGAAGCCTCGGTCACCTATACCGGCTTCAATCCGGTCAACCTGAAGTTCGGCCGCTTCTACACC 
GACTTCGGCCTGGAAAAGGCCACCAGCTCCAAATGGGTCACCGCGCTGGAGCGCAACCTCACCTACGACATC 
GCCGACTGGGTCAACGACAACGTCGGTACCGGTATCCAGGCCAGCTCGGTGGTGGGCGGCATGGCCTTCCTC 
TCGGGCAGCGTGTTCAGCGAGAACAACAACGATACCGACGGCGACAGCGTCAAGCGCTACAACCTGCGCGGC 
GTGTTCGCGCCGCTGCACGAGCCGGGCAACGTGGTGCACCTGGGCCTGCAATACGCCTATCGCGACCTGGAG 
GACAGCGCGGTGGATACCCGGATCCGCCCGCGCATGGGCATGCGCGGCGTCTCCACCAATGGCGGCAACGAT 
GCCGGCAGCAATGGCAACCGTGGCCTGTTCGGCGGCAGTTCGGCAGTCGAGGGGCTGTGGAAGGACGACTCG 
GTCTGGGGCCTGGAAGGCGCCTGGGCGCTGGGTGCCTTCTCGGCCCAGGCCGAGTACCTGCGGCGCACGGTC 
AAGGCCGAGCGCGACCGCGAGGATCTCAAGGCCTCCGGCTATTACGCGCAACTGGCCTACACCCTCACCGGC 
GAGCCGCGCCTCTACAAGCTGGACGGCGCCAAGTTCGACACCATCAAGCCGGAGAACAAGGAAATCGGCGCC 
TGGGAGCTGTTCTACCGCTACGACTCGATCAAGGTCGAGGATGACAACATCGTCGTCGACAGCGCCACCCGC 
GAGGTCGGCGACGCCAAGGGCAAGACCCATACCCTGGGCGTCAACTGGTACGCCAACGAGGCGGTGAAGGTT 
TCCGCCAACTACGTCAAGGCGAAGACCGACAAGATCAGCAATGCCAACGGCGACGATAGCGGCGATGGCCTG 
GTGATGCGCCTGCAGTACGTGTTCTGA