ViewGene
Locus Name:
GeneID:
Location:

GeneID:1073
TrivialName: PA14_36960
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_36960
PAO1 Ortholog Locus:PA2135
Sequence Length:1365
Protein Length:454
Start: 3293306
Stop: 3291942
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG05523.1|AE004641_2 (AE004641) probable transporter [Pseudomonas aeruginosa PAO1]
Identities = 450/454 (99%), Positives = 452/454 (99%)
Sequence:
ATGAGCTTCAGCCTGTGGTTGCTGGTACTGGGCTGCATCCTGCTGACGCTCGGCCTGGCCTCGGCCTACCTG
CGCCTGCTGCCGGTCAGCACCTCGTTCCTCTACCTGCTGTTCGGCCTGGCCATCGGCCCGGCCGGGCTGCAT
GCCTGGCGCAGTGGCCTGGCGGACATCAGCGGCTGGTTCGAACACCTCGCCGAGGCGGCCCTGCTGATCTCG
CTGTTCATCGGCGGCCTCAAGCTGCGCCTGCCGCTGCGCTCGCCGGCCTGGACCGCCGCCTGGCTGCTGGCC
GGACCGGTCCTGCTCGGCTGTATCCTCGGCCTTACCCTGGGCGCGCATTTCCTGTTCGGCCTGGACTGGGGG
CTGGCCTTGCTGGTCGCGGCGATCCTCGCGCCCACCGACCCGGTGCTGGCCAGCGACATCCAGGTCAACCAC
GCCGGCGACGACGATCGCCTGCGCTACGCCGTATCCGGCGAGGCGGGACTCAACGACGGCATCGCCTTTCCC
TTCGTCATCGCCGCCCTGCTGCTGATCGGTCAGGGCGGCGGCCTGCCTGGCGAGTTCGACCGCAGCGGCCTG
GACTGGCTGCTGCGCGACGTCCTCTGGGCCATCCCCGCCGGATTGCTGGTGGGCTATTGCCTGGGCCATGGC
CTCGGCCGCCTGGCCATCCACCTGCGGGCGCGGCACACCGACACCTCGGTGTCGGCCAACGACTTCCTCGCC
CTGGCGCTGATCGCGCTGTCCTATGTCGGCGCCGACGCGCTGGGCGGCTGGGGCTTCCTCGCCAGCTTCGCC
GCCGGGATCGGCCTGCGCCACGCCGAGGTGGCGACGCTGGGACACGCCTCGGCACCGGCCGAGGCGCAGGCG
GCCGCCGCCGACGTGCGCGAGGCCGGGCAGGCCAGCGGCGCCATCGAGTATGGCGCCGACCGCAGCGAACAC
CCGAAGGTGGCGGCCGGCGCGGTGATGCTCGACGTGCTCTCCTTCGGCAACCTGCTGGAGCGCTCGCTGGAA
GTGCTGCTGGTGACCCTGCTCGGCGCCATGCTCTACCAGCACTGGGACTGGCGCGCGCTGCCGCTGGCGCTG
CTGCTGTTCTGCGTGTGCCGGCCGGCGATGGTCTGGCTGCTGGTCGGCCGGCGGCTGATGCACCCGGCGCAG
CGGCGCCTGCTCGGCTGGTTCGGCATCCGCGGCATCGGCAGCCTGTACTACCTCAGCTACGCGCTGAACCAG
GGGCTGCCTACGGCGCTCGCGCATACCGCCAGCGACCTGGTGCTGAGCCTCGTCGCCCTGAGCATCTGCGTG
CACGGCCTGAGCATCCAGCCGCTGCTGATGCGCCACGCGCGCAGCGTCAGTCGCCGCGATCGGGAATGA
Translation:
MSFSLWLLVLGCILLTLGLASAYLRLLPVSTSFLYLLFGLAIGPAGLHAWRSGLADISGWFEHLAEAALLIS
LFIGGLKLRLPLRSPAWTAAWLLAGPVLLGCILGLTLGAHFLFGLDWGLALLVAAILAPTDPVLASDIQVNH
AGDDDRLRYAVSGEAGLNDGIAFPFVIAALLLIGQGGGLPGEFDRSGLDWLLRDVLWAIPAGLLVGYCLGHG
LGRLAIHLRARHTDTSVSANDFLALALIALSYVGADALGGWGFLASFAAGIGLRHAEVATLGHASAPAEAQA
AAADVREAGQASGAIEYGADRSEHPKVAAGAVMLDVLSFGNLLERSLEVLLVTLLGAMLYQHWDWRALPLAL
LLFCVCRPAMVWLLVGRRLMHPAQRRLLGWFGIRGIGSLYYLSYALNQGLPTALAHTASDLVLSLVALSICV
HGLSIQPLLMRHARSVSRRDRE*
AnnotationID:1082GeneID:1073
AnnotatorUID: diggins
Modification Date/Time: 2005-03-03 11:11:56
Gene Name:
Confidence Code:3
GeneProduct:putative Na+/H+ antiporter
Cell Localization:()
Synonyms:PA2135
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(27) Transport of small molecules
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG0025
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAO56024.1| (AE016864) sodium/hydrogen exchanger family protein [Pseudomonas
           syringae pv. tomato str. DC3000]
          Length = 449

 Score =  445 bits (1145), Expect = e-124
 Identities = 234/453 (51%), Positives = 317/453 (69%), Gaps = 13/453 (2%)








 
Structural Features:
COG0025, NhaP, NhaP-type Na+/H+ and K+/H+ antiporters 
[Inorganic ion transport and metabolism]
CD-Length = 429 residues,  96.5% aligned
Score =  166 bits (421), Expect = 6e-42
Identities = 132/455 (29%), Positives = 176/455 (38%), Gaps = 42/455 (9%)






   
Genomic Context:






   
Comment:


















    ReferenceID:2149




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:19291




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:32585




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:1073_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:1073
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
1934
                           PA2135_tr
                           translation of PA2135
                           454
                           99.11
                           99.55
                           0
                           2308.0
     

     
     
66791
                           gb|AAG05523.1|AE004641_2
                           (AE004641) probable transporter [Pseudomonas aeruginosa PAO1]
                           454
                           99.11
                           99.55
                           0
                           2308.0
     

     
     
66792
                           gb|AAP76495.1|
                           (AY240957) Uvs010 [uncultured bacterium]
                           460
                           52.60
                           67.82
                           13
                           1168.0
     

     
     
66793
                           gb|AAO56024.1|
                           (AE016864) sodium/hydrogen exchanger family protein [Pseudomonas syringae pv. tomato str. DC3000]
                           458
                           51.09
                           69.43
                           13
                           1156.0
     

     
     
66794
                           dbj|BAC89700.1|
                           (AP006574) gll1759 [Gloeobacter violaceus PCC 7421]
                           460
                           41.95
                           57.17
                           29
                           820.0
     

     






      

          
GC ORFID: 44075How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA2135Glimmer Score: 

          
Start: 1660608Stop: 1661972

          
Length: 1365


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA2135 translation of PA2135Homolog Bit Score 893.0

          
Other Homologs:  psyr_15may02_Scaffold7_revised_gene7001 (ORF: BLASTX 452.0), t_PA2135 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAGCTTCAGCCTGTGGTTGCTGGTACTGGGCTGCATCCTGCTGACGCTCGGCCTGGCCTCGGCCTACCTG 
CGCCTGCTGCCGGTCAGCACCTCGTTCCTCTACCTGCTGTTCGGCCTGGCCATCGGCCCGGCCGGGCTGCAT 
GCCTGGCGCAGTGGCCTGGCGGACATCAGCGGCTGGTTCGAACACCTCGCCGAGGCGGCCCTGCTGATCTCG 
CTGTTCATCGGCGGCCTCAAGCTGCGCCTGCCGCTGCGCTCGCCGGCCTGGACCGCCGCCTGGCTGCTGGCC 
GGACCGGTCCTGCTCGGCTGTATCCTCGGCCTTACCCTGGGCGCGCATTTCCTGTTCGGCCTGGACTGGGGG 
CTGGCCTTGCTGGTCGCGGCGATCCTCGCGCCCACCGACCCGGTGCTGGCCAGCGACATCCAGGTCAACCAC 
GCCGGCGACGACGATCGCCTGCGCTACGCCGTATCCGGCGAGGCGGGACTCAACGACGGCATCGCCTTTCCC 
TTCGTCATCGCCGCCCTGCTGCTGATCGGTCAGGGCGGCGGCCTGCCTGGCGAGTTCGACCGCAGCGGCCTG 
GACTGGCTGCTGCGCGACGTCCTCTGGGCCATCCCCGCCGGATTGCTGGTGGGCTATTGCCTGGGCCATGGC 
CTCGGCCGCCTGGCCATCCACCTGCGGGCGCGGCACACCGACACCTCGGTGTCGGCCAACGACTTCCTCGCC 
CTGGCGCTGATCGCGCTGTCCTATGTCGGCGCCGACGCGCTGGGCGGCTGGGGCTTCCTCGCCAGCTTCGCC 
GCCGGGATCGGCCTGCGCCACGCCGAGGTGGCGACGCTGGGACACGCCTCGGCACCGGCCGAGGCGCAGGCG 
GCCGCCGCCGACGTGCGCGAGGCCGGGCAGGCCAGCGGCGCCATCGAGTATGGCGCCGACCGCAGCGAACAC 
CCGAAGGTGGCGGCCGGCGCGGTGATGCTCGACGTGCTCTCCTTCGGCAACCTGCTGGAGCGCTCGCTGGAA 
GTGCTGCTGGTGACCCTGCTCGGCGCCATGCTCTACCAGCACTGGGACTGGCGCGCGCTGCCGCTGGCGCTG 
CTGCTGTTCTGCGTGTGCCGGCCGGCGATGGTCTGGCTGCTGGTCGGCCGGCGGCTGATGCACCCGGCGCAG 
CGGCGCCTGCTCGGCTGGTTCGGCATCCGCGGCATCGGCAGCCTGTACTACCTCAGCTACGCGCTGAACCAG 
GGGCTGCCTACGGCGCTCGCGCATACCGCCAGCGACCTGGTGCTGAGCCTCGTCGCCCTGAGCATCTGCGTG 
CACGGCCTGAGCATCCAGCCGCTGCTGATGCGCCACGCGCGCAGCGTCAGTCGCCGCGATCGGGAATGA