ViewGene
Locus Name:
GeneID:
Location:

GeneID:107
TrivialName: PA14_17040
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_17040
PAO1 Ortholog Locus:PA3658
Sequence Length:2703
Protein Length:900
Start: 1461895
Stop: 1459193
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG07046.1|AE004785_10 (AE004785) protein-PII uridylyltransferase [Pseudomonas aeruginosa PAO1]
Identities = 898/900 (99%), Positives = 898/900 (99%)
Sequence:
ATGCCGCAGGTGGATCCCGAATTGTTCGATCGCGGGCAGTTCCAGGCGGAACTGGCCTTGAAGTCCAGCCCG
ATCGCCGCCTTCAAGAAGGCCATCCGGCAATTCCGCGAAGTGCTCGACAACCGTTTCAACAGCGGCCGCGAC
ATCCGCCGCCTGATCGAAGATCGCGCCTGGTGCGTCGACCAGATCCTGCAACAGGCCTGGCAGCGCTTCGAC
TGGGGAGACGACGCCGACATCACCCTGGTCGCCGTGGGCGGCTACGGCCGCGGCGAACTCCACCCCTACTCC
GACGTCGACCTGCTGATCCTCCTCGACAGCGAGGACCAGGAGAGCTTCCGCGAACCGATCGAAGGCTTCCTC
ACCCTGCTCTGGGACATAGGCCTGGAAGTCGGCCAGAGCGTGCGCTCGGTGCAGCAGTGCGCGGAGGAAGCA
CGCGCCGACCTGACGGTGATCACCACCCTCATGGAGTGCCGCACCATCTGCGGCCCTGACAGCCTGCGCCAG
CGCATGCTGCAGGTTACTGGCAGCGCGCACATGTGGCCGAGCAAGGAGTTCTTCCTGGCCAAACGCCACGAA
CAGCAGCGCCGCCACGCCAAGTACAACGACACCGAGTACAACCTCGAGCCCAACGTCAAGGGCTCCCCCGGC
GGCCTGCGCGACATCCAGACCATCCTCTGGATGGCCCGCCGCCAGTTCGGCAGCCTCAACCTGCACGCCCTG
GTGCGCGAAGGCTTCCTGGTGGAAAGCGAGTGCAGCATGCTGGCCTCCAGCCAGGAGTTCCTCTGGCGGGTC
CGCTATGCCCTGCACATGCTCGCCGGGCGCGCCGAGGATCGCCTGCTGTTCGATCACCAGCGCAGCATCGCC
CGTCTGTTCGGCTACGAAGACAACGACGTCAAGCTGGCGGTCGAACGCTTCATGCAGAAGTACTACCGGGTG
GTGATGGCGATCTCCGAGCTGAACGACCTGATCATCCAGCACTTCGAGGAAGTCATCCTGCCCTGCGAGCAG
CCGGTGCAGATCCAGCCGCTGAACAGTCGCTTCCAGTTGCGCGATGGCTACATCGAGGTGACGCACCCGAAC
GTCTTCAAGCGCACCCCGTTCGCCCTCCTGGAAATCTTCGTGCTGATGGCCCAGCACCCGGAAATCAAGGGC
GTGCGCGCCGACACCATTCGCCTGCTGCGCGACAGCCGACACCTGATCGACGACGAGTTCCGCCACGACATC
CGCAACACCAGCCTGTTCATCGAGCTGTTCAAGAGCAGCCAGGGTATCCACCGCAACCTGCGGCGGATGAAC
CGCTACGGCATCCTCGGCCGCTACCTGCCGGAGTTCGGCCATATCATCGGGCAGATGCAGCACGACCTGTTC
CATATCTATACGGTGGACGCCCACACCCTCAACCTGATCAAGCACCTGCGCAAGCTGAATCGGCCGGAGATG
GCCGAGAAATATCCGCTGGCGAGCAAGATCATCGATCGTCTGCCCAAGCCGGAACTGATCTACATCGCCGGT
CTCTACCACGACATCGCCAAGGGCCGTGGCGGCGACCACTCGGAACTCGGTGCGGTGGACGCCGAGGCCTTC
TGCCAGAGCCACCAGTTGCCGCCCTGGGACACCCAACTGGTGTCCTGGCTGGTGCAGAACCACCTGGTGATG
TCGACCACCGCGCAACGCAAGGACCTCTCCGACCCGCAGGTGATCTTCGATTTCGCCCAACTGGTCGGCGAC
CAGACCCACCTCGACTACCTGTACGTGCTCACCGTGGCCGACATCAACGCCACCAACCCGACGCTCTGGAAC
TCCTGGCGCGCCAGCCTGCTCCGGCAGCTCTACACCGAGACCAAGCGCGCCCTGCGCCGCGGCCTGGAGAAC
CCGGTGGACCGCGAGGAGCAGATCCGCCAGACGCAGACCGCGGCCCTCGACCAACTGGTACGCAACGGCATC
GACCAGGACGATGCAGAGCAGTTATGGAGCCAGCTCGGCGACGACTACTTCCTGCGCCACACCGCCGGCGAC
GTGGCCTGGCACACCGAGGCGATCCTCCAGCACCCGGACGACGGCACGCCGCTGGTGCTGATCAAGGAAACC
ACCCAGCGCGAGTTCGAGAGCGGTTCGCAGATCTTCATCTACGCCGCCGACCAGCACGATTTCTTCGCGGTC
ACCGTGGCCGCCATGGACCAGCTCAACCTGAGCATCCAGGACGCGCGGATCATCACCTCCACCAGCCAGTTC
ACCCTCGATACCTATATCGTGCTCGACGCCGACGGCGACTCCATCGGCAACAACCCGGAGCGCATCGCCGAG
ATCCGCGAGGGGCTTATCGACGCGCTGAAGAACCCCGACGACTACCCGACCATCATCCAGCGCCGGGTGCCG
CGCCAGCTCAAGCACTTCGCCTTCGCCCCGCAAGTGACCATCTCCACCGACGCGCTGCGCCAGGTCTCGGTG
CTCGAGGTCATCGCCCCCGACCGCCCAGGCCTGCTGGCGCGGATCGGCGGCATTTTCCTGGATTTCGACCTG
TCGGTGCAGAACGCCAAGATCGCCACCCTCGGCGAGCGCGTGGAGGACGTCTTCTACATCACCGATGCGCGC
AACCAGCCGCTCGCCGACCCCGACCTGTGCAAACGCCTGCAGGCCGCCCTGGTCGAGCAGCTGTCACAAGAC
AACGGACGGGACACCCTGCCTACCCGGATAAACTTCTGA
Translation:
MPQVDPELFDRGQFQAELALKSSPIAAFKKAIRQFREVLDNRFNSGRDIRRLIEDRAWCVDQILQQAWQRFD
WGDDADITLVAVGGYGRGELHPYSDVDLLILLDSEDQESFREPIEGFLTLLWDIGLEVGQSVRSVQQCAEEA
RADLTVITTLMECRTICGPDSLRQRMLQVTGSAHMWPSKEFFLAKRHEQQRRHAKYNDTEYNLEPNVKGSPG
GLRDIQTILWMARRQFGSLNLHALVREGFLVESECSMLASSQEFLWRVRYALHMLAGRAEDRLLFDHQRSIA
RLFGYEDNDVKLAVERFMQKYYRVVMAISELNDLIIQHFEEVILPCEQPVQIQPLNSRFQLRDGYIEVTHPN
VFKRTPFALLEIFVLMAQHPEIKGVRADTIRLLRDSRHLIDDEFRHDIRNTSLFIELFKSSQGIHRNLRRMN
RYGILGRYLPEFGHIIGQMQHDLFHIYTVDAHTLNLIKHLRKLNRPEMAEKYPLASKIIDRLPKPELIYIAG
LYHDIAKGRGGDHSELGAVDAEAFCQSHQLPPWDTQLVSWLVQNHLVMSTTAQRKDLSDPQVIFDFAQLVGD
QTHLDYLYVLTVADINATNPTLWNSWRASLLRQLYTETKRALRRGLENPVDREEQIRQTQTAALDQLVRNGI
DQDDAEQLWSQLGDDYFLRHTAGDVAWHTEAILQHPDDGTPLVLIKETTQREFESGSQIFIYAADQHDFFAV
TVAAMDQLNLSIQDARIITSTSQFTLDTYIVLDADGDSIGNNPERIAEIREGLIDALKNPDDYPTIIQRRVP
RQLKHFAFAPQVTISTDALRQVSVLEVIAPDRPGLLARIGGIFLDFDLSVQNAKIATLGERVEDVFYITDAR
NQPLADPDLCKRLQAALVEQLSQDNGRDTLPTRINF*
AnnotationID:117GeneID:107
AnnotatorUID: diggins
Modification Date/Time: 2005-06-19 10:10:57
Gene Name:glnD
Confidence Code:2
GeneProduct:protein-P-II uridylyltransferase
Cell Localization:()
Synonyms:nfrX
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(8) Central intermediary metabolism
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG2844
Secondary Functional Category(ies):Posttranslational modification, protein turnover, chaperones
EC Number:2.7.7.59
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAO55052.1| (AE016861) [protein-pII] uridylyltransferase [Pseudomonas syringae
           pv. tomato str. DC3000]
          Length = 898

 Score = 1476 bits (3822), Expect = 0.0
 Identities = 729/886 (82%), Positives = 802/886 (90%), Gaps = 1/886 (0%)

>gb|AAN78696.1|AE016755_196 (AE016755) [Protein-PII] uridylyltransferase [Escherichia coli
           CFT073]
          Length = 890

 Score =  683 bits (1762), Expect = 0.0
 Identities = 371/867 (42%), Positives = 530/867 (61%), Gaps = 13/867 (1%)

>gb|AAN41819.1|AE015052_10 (AE015052) protein PII; uridylyltransferase acts on regulator of
           glnA [Shigella flexneri 2a str. 301]
          Length = 890

 Score =  682 bits (1759), Expect = 0.0
 Identities = 371/867 (42%), Positives = 530/867 (61%), Gaps = 13/867 (1%)







 
Structural Features:
COG2844, GlnD, UTP:GlnB (protein PII) uridylyltransferase 
[Posttranslational modification, protein turnover, chaperones]
CD-Length = 867 residues, 100.0% aligned
Score = 1066 bits (2757), Expect = 0.0
Identities = 429/879 (48%), Positives = 570/879 (64%), Gaps = 12/879 (1%)






   
Genomic Context:






   
Comment:


















    ReferenceID:217




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:17359




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:31885




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:107_cdd.html


    		




 
URL:

















    ReferenceID:34236




  
Author/Investigator(s):
        Perlova O, Nawroth R, Zellermann EM, Meletzus D.





  
Title:
        Isolation and characterization of the glnD gene of Gluconacetobacter diazotrophicus, encoding a putative uridylyltransferase/uridylyl-removing enzyme.




  
PubMed:
        12384297


MedLine:
        




    
Source:
Gene. 2002 Sep 4;297(1-2):159-68.






    
Reference Type:Journal 







    
Data:


    		




 
URL:http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=12384297









           
Homologs By Global Alignment 

           

       



     
Gene ID:107
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
205
                           PA3658_tr
                           translation of PA3658
                           900
                           99.77
                           99.77
                           0
                           4662.0
     

     
     
15279
                           gb|AAG07046.1|AE004785_10
                           (AE004785) protein-PII uridylyltransferase [Pseudomonas aeruginosa PAO1]
                           900
                           99.77
                           99.77
                           0
                           4662.0
     

     
     
15280
                           gb|AAO55052.1|
                           (AE016861) [protein-pII] uridylyltransferase [Pseudomonas syringae pv. tomato str. DC3000]
                           902
                           81.26
                           89.57
                           6
                           3821.0
     

     
     
15281
                           emb|CAA42173.1|
                           (X59610) uridylyl transferase [Azotobacter vinelandii]
                           900
                           80.11
                           88.44
                           1
                           3784.0
     

     
     
15282
                           gb|AAN67210.1|AE016348_2
                           (AE016779) protein-pII uridylyltransferase [Pseudomonas putida KT2440]
                           900
                           79.11
                           88.11
                           0
                           3744.0
     

     






      

          
GC ORFID: 43109How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA3658Glimmer Score: 

          
Start: 3492042Stop: 3494744

          
Length: 2703


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA3658 translation of PA3658Homolog Bit Score 1800.0

          
Other Homologs:  psyr_15may02_Scaffold3_revised_gene4798 (ORF: BLASTX 1477.0), t_PA3658 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGCCGCAGGTGGATCCCGAATTGTTCGATCGCGGGCAGTTCCAGGCGGAACTGGCCTTGAAGTCCAGCCCG 
ATCGCCGCCTTCAAGAAGGCCATCCGGCAATTCCGCGAAGTGCTCGACAACCGTTTCAACAGCGGCCGCGAC 
ATCCGCCGCCTGATCGAAGATCGCGCCTGGTGCGTCGACCAGATCCTGCAACAGGCCTGGCAGCGCTTCGAC 
TGGGGAGACGACGCCGACATCACCCTGGTCGCCGTGGGCGGCTACGGCCGCGGCGAACTCCACCCCTACTCC 
GACGTCGACCTGCTGATCCTCCTCGACAGCGAGGACCAGGAGAGCTTCCGCGAACCGATCGAAGGCTTCCTC 
ACCCTGCTCTGGGACATAGGCCTGGAAGTCGGCCAGAGCGTGCGCTCGGTGCAGCAGTGCGCGGAGGAAGCA 
CGCGCCGACCTGACGGTGATCACCACCCTCATGGAGTGCCGCACCATCTGCGGCCCTGACAGCCTGCGCCAG 
CGCATGCTGCAGGTTACTGGCAGCGCGCACATGTGGCCGAGCAAGGAGTTCTTCCTGGCCAAACGCCACGAA 
CAGCAGCGCCGCCACGCCAAGTACAACGACACCGAGTACAACCTCGAGCCCAACGTCAAGGGCTCCCCCGGC 
GGCCTGCGCGACATCCAGACCATCCTCTGGATGGCCCGCCGCCAGTTCGGCAGCCTCAACCTGCACGCCCTG 
GTGCGCGAAGGCTTCCTGGTGGAAAGCGAGTGCAGCATGCTGGCCTCCAGCCAGGAGTTCCTCTGGCGGGTC 
CGCTATGCCCTGCACATGCTCGCCGGGCGCGCCGAGGATCGCCTGCTGTTCGATCACCAGCGCAGCATCGCC 
CGTCTGTTCGGCTACGAAGACAACGACGTCAAGCTGGCGGTCGAACGCTTCATGCAGAAGTACTACCGGGTG 
GTGATGGCGATCTCCGAGCTGAACGACCTGATCATCCAGCACTTCGAGGAAGTCATCCTGCCCTGCGAGCAG 
CCGGTGCAGATCCAGCCGCTGAACAGTCGCTTCCAGTTGCGCGATGGCTACATCGAGGTGACGCACCCGAAC 
GTCTTCAAGCGCACCCCGTTCGCCCTCCTGGAAATCTTCGTGCTGATGGCCCAGCACCCGGAAATCAAGGGC 
GTGCGCGCCGACACCATTCGCCTGCTGCGCGACAGCCGACACCTGATCGACGACGAGTTCCGCCACGACATC 
CGCAACACCAGCCTGTTCATCGAGCTGTTCAAGAGCAGCCAGGGTATCCACCGCAACCTGCGGCGGATGAAC 
CGCTACGGCATCCTCGGCCGCTACCTGCCGGAGTTCGGCCATATCATCGGGCAGATGCAGCACGACCTGTTC 
CATATCTATACGGTGGACGCCCACACCCTCAACCTGATCAAGCACCTGCGCAAGCTGAATCGGCCGGAGATG 
GCCGAGAAATATCCGCTGGCGAGCAAGATCATCGATCGTCTGCCCAAGCCGGAACTGATCTACATCGCCGGT 
CTCTACCACGACATCGCCAAGGGCCGTGGCGGCGACCACTCGGAACTCGGTGCGGTGGACGCCGAGGCCTTC 
TGCCAGAGCCACCAGTTGCCGCCCTGGGACACCCAACTGGTGTCCTGGCTGGTGCAGAACCACCTGGTGATG 
TCGACCACCGCGCAACGCAAGGACCTCTCCGACCCGCAGGTGATCTTCGATTTCGCCCAACTGGTCGGCGAC 
CAGACCCACCTCGACTACCTGTACGTGCTCACCGTGGCCGACATCAACGCCACCAACCCGACGCTCTGGAAC 
TCCTGGCGCGCCAGCCTGCTCCGGCAGCTCTACACCGAGACCAAGCGCGCCCTGCGCCGCGGCCTGGAGAAC 
CCGGTGGACCGCGAGGAGCAGATCCGCCAGACGCAGACCGCGGCCCTCGACCAACTGGTACGCAACGGCATC 
GACCAGGACGATGCAGAGCAGTTATGGAGCCAGCTCGGCGACGACTACTTCCTGCGCCACACCGCCGGCGAC 
GTGGCCTGGCACACCGAGGCGATCCTCCAGCACCCGGACGACGGCACGCCGCTGGTGCTGATCAAGGAAACC 
ACCCAGCGCGAGTTCGAGAGCGGTTCGCAGATCTTCATCTACGCCGCCGACCAGCACGATTTCTTCGCGGTC 
ACCGTGGCCGCCATGGACCAGCTCAACCTGAGCATCCAGGACGCGCGGATCATCACCTCCACCAGCCAGTTC 
ACCCTCGATACCTATATCGTGCTCGACGCCGACGGCGACTCCATCGGCAACAACCCGGAGCGCATCGCCGAG 
ATCCGCGAGGGGCTTATCGACGCGCTGAAGAACCCCGACGACTACCCGACCATCATCCAGCGCCGGGTGCCG 
CGCCAGCTCAAGCACTTCGCCTTCGCCCCGCAAGTGACCATCTCCACCGACGCGCTGCGCCAGGTCTCGGTG 
CTCGAGGTCATCGCCCCCGACCGCCCAGGCCTGCTGGCGCGGATCGGCGGCATTTTCCTGGATTTCGACCTG 
TCGGTGCAGAACGCCAAGATCGCCACCCTCGGCGAGCGCGTGGAGGACGTCTTCTACATCACCGATGCGCGC 
AACCAGCCGCTCGCCGACCCCGACCTGTGCAAACGCCTGCAGGCCGCCCTGGTCGAGCAGCTGTCACAAGAC 
AACGGACGGGACACCCTGCCTACCCGGATAAACTTCTGA