ViewGene
Locus Name:
GeneID:
Location:

GeneID:1069
TrivialName: PA14_05750
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_05750
PAO1 Ortholog Locus:PA0440
Sequence Length:1368
Protein Length:455
Start: 509472
Stop: 508105
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG03829.1|AE004481_5 (AE004481) probable oxidoreductase [Pseudomonas aeruginosa PAO1]
Identities = 451/455 (99%), Positives = 451/455 (99%)
Sequence:
GTGATCGATTCCCTGAACCACCTCCCCCGTCCGGACGCCGGCGCGGACACGCTCGCCGAGCGCTTCGCCGAC
CTCGCGCCGCCGCTCAACGCCCGCCAGGCCGCCCTGGAAAGCGCCCGCTGCCTGTACTGCTACGACGCGCCC
TGCGTCAACGCCTGCCCGACCGAGATCGACATCCCCGGGTTCATCCGCAGCATCGCCCAGGAGAATGTCCAG
GGCGCGGCGCAGAAGATCCTCTCGGCGAACATCCTCGGCGGCAGCTGCGCCCGCGTCTGCCCCACGGAAATC
CTCTGCCAGCGGGCCTGCGTACGCAACAACGCCCAGGAATGCGCACCGGTGCTGATCGGCCAGTTGCAACGC
TACGCCCTCGACCACGCCGGCTTCGGCGAACATCCGTTCAAGCGCTCGCCGGCCACCGGCAAGCGCATCGCC
GTGGTCGGCGCCGGGCCGGCCGGGCTGTCCTGCGCCCACCGCCTGGCCATGCACGGCCACGACGTGGTGCTC
TTCGAGGCCCGCGCCAAGGTCGGCGGCCTCAACGAGTACGGCATCGCCCGCTACAAGCTGGTGGACGACTTC
GCCCGGCGCGAAGTGGAATTCCTCCTGCAGATCGGCGGTATCGAACTGCGCCACGGCCAGCGTCTCGGCGAC
AACCTGGCGCTCGGCGCCCTGCACGACGAGTACGACGCGGTGTTCCTCGGCATCGGCCTGGCCGCCAGCAAG
CGCCTCGGCCTGGAAGACGAGGACGCCCCCGGCCTGCTCGCCGCCACCGACTACATCCGCGAGCTGCGGCAG
AGCGACGACCTGCTCGACCTGCCCGTCGCCGACCGTTGCATCGTCATCGGCGCCGGCAACACCGCCATCGAC
ATGGCGGTGCAGATGAGCCGGCTCGGCGCCCGCGACGTCAACCTGGTCTACCGCCGTGGCTTCGAGGAAATG
GGCGCCACCGGCCACGAGCAGGAGATCGCCAAGGCCAGCCAGGTGCGCCTGCTGACCTGGGCCCGACCGGAA
CGGGTACTGCTTGACGAGCAAGGCCGGGTGCGCGGCATGCGCTTCGCCCGCACGCGCCTGGAGAACGGTCGC
CTGGGCGACACCGGCGAGCACTTCGAACTGGCCGCCGACGCCATCTTCAAGGCCATCGGCCAGGCCTTCGAA
GGCGCCAGCCTGGGCGATCCGCTGGCAGCGCAACTGCGGCGCGACGGCGAGCGCATCCAGGTCGACGGACAG
ATGCGCACCAGCATCCCCGGCATCTACGCCGGCGGCGACTGCGTGGCGCTCGGCGAGGACCTCACCGTGCAG
GCGGTGCAGCACGGCAAACTGGCGGCGGAAGCGATCCACGCCCAACTCATGCTCAACGTGGAGGCTGCGTGA
Translation:
MIDSLNHLPRPDAGADTLAERFADLAPPLNARQAALESARCLYCYDAPCVNACPTEIDIPGFIRSIAQENVQ
GAAQKILSANILGGSCARVCPTEILCQRACVRNNAQECAPVLIGQLQRYALDHAGFGEHPFKRSPATGKRIA
VVGAGPAGLSCAHRLAMHGHDVVLFEARAKVGGLNEYGIARYKLVDDFARREVEFLLQIGGIELRHGQRLGD
NLALGALHDEYDAVFLGIGLAASKRLGLEDEDAPGLLAATDYIRELRQSDDLLDLPVADRCIVIGAGNTAID
MAVQMSRLGARDVNLVYRRGFEEMGATGHEQEIAKASQVRLLTWARPERVLLDEQGRVRGMRFARTRLENGR
LGDTGEHFELAADAIFKAIGQAFEGASLGDPLAAQLRRDGERIQVDGQMRTSIPGIYAGGDCVALGEDLTVQ
AVQHGKLAAEAIHAQLMLNVEAA*
AnnotationID:1078GeneID:1069
AnnotatorUID: diggins
Modification Date/Time: 2005-03-25 12:12:15
Gene Name:
Confidence Code:3
GeneProduct:putative glutamate synthase beta subunit
Cell Localization:()
Synonyms:gltX
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(2) Amino acid biosynthesis and metabolism
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG0493
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAN69628.1|AE016596_6 (AE016789) glutamate synthase, small subunit, putative [Pseudomonas
           putida KT2440]
          Length = 455

 Score =  755 bits (1950), Expect = 0.0
 Identities = 373/455 (81%), Positives = 415/455 (91%)

>gb|AAN29232.1|AE014340_10 (AE014340) pyridine nucleotide-disulphide oxidoreductase family
           protein [Brucella suis 1330]
          Length = 501

 Score =  440 bits (1131), Expect = e-122
 Identities = 239/441 (54%), Positives = 294/441 (66%), Gaps = 5/441 (1%)

>gb|AAL52819.1| (AE009599) GLUTAMATE SYNTHASE (NADPH) SMALL CHAIN [Brucella
           melitensis 16M]
          Length = 498

 Score =  439 bits (1130), Expect = e-122
 Identities = 239/441 (54%), Positives = 294/441 (66%), Gaps = 5/441 (1%)






 
Structural Features:
COG0493, GltD, NADPH-dependent glutamate synthase beta chain 
and related oxidoreductases 
[Amino acid transport and metabolism]
CD-Length = 457 residues,  99.1% aligned
Score =  351 bits (902), Expect = 1e-97
Identities = 161/458 (35%), Positives = 216/458 (47%), Gaps = 28/458 (6%)






   
Genomic Context:






   
Comment:


















    ReferenceID:14275




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:19283




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:33762




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:1069_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:1069
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
1926
                           PA0440_tr
                           translation of PA0440
                           455
                           99.12
                           99.12
                           0
                           2316.0
     

     
     
66454
                           gb|AAG03829.1|AE004481_5
                           (AE004481) probable oxidoreductase [Pseudomonas aeruginosa PAO1]
                           455
                           98.90
                           99.12
                           0
                           2313.0
     

     
     
66455
                           gb|AAN69628.1|AE016596_6
                           (AE016789) glutamate synthase, small subunit, putative [Pseudomonas putida KT2440]
                           455
                           81.75
                           91.20
                           0
                           1946.0
     

     
     
66458
                           emb|CAC47026.1|
                           (AL591790) PROBABLE GLUTAMATE SYNTHASE SMALL CHAIN PROTEIN [Sinorhizobium meliloti]
                           471
                           50.74
                           64.96
                           34
                           1109.0
     

     
     
66459
                           dbj|BAB48971.1|
                           (AP002997) glutamate synthase beta subunit [Mesorhizobium loti]
                           468
                           49.35
                           63.24
                           30
                           1098.0
     

     






      

          
GC ORFID: 44071How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA0440Glimmer Score: 

          
Start: 6310814Stop: 6309447

          
Length: 1368


          
Start Codon: GTGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA0440 translation of PA0440Homolog Bit Score 896.0

          
Other Homologs:  t_PA0440 (ORF: GLIMMER)

          
GC ORF Sequence

           
GTGATCGATTCCCTGAACCACCTCCCCCGTCCGGACGCCGGCGCGGACACGCTCGCCGAGCGCTTCGCCGAC 
CTCGCGCCGCCGCTCAACGCCCGCCAGGCCGCCCTGGAAAGCGCCCGCTGCCTGTACTGCTACGACGCGCCC 
TGCGTCAACGCCTGCCCGACCGAGATCGACATCCCCGGGTTCATCCGCAGCATCGCCCAGGAGAATGTCCAG 
GGCGCGGCGCAGAAGATCCTCTCGGCGAACATCCTCGGCGGCAGCTGCGCCCGCGTCTGCCCCACGGAAATC 
CTCTGCCAGCGGGCCTGCGTACGCAACAACGCCCAGGAATGCGCACCGGTGCTGATCGGCCAGTTGCAACGC 
TACGCCCTCGACCACGCCGGCTTCGGCGAACATCCGTTCAAGCGCTCGCCGGCCACCGGCAAGCGCATCGCC 
GTGGTCGGCGCCGGGCCGGCCGGGCTGTCCTGCGCCCACCGCCTGGCCATGCACGGCCACGACGTGGTGCTC 
TTCGAGGCCCGCGCCAAGGTCGGCGGCCTCAACGAGTACGGCATCGCCCGCTACAAGCTGGTGGACGACTTC 
GCCCGGCGCGAAGTGGAATTCCTCCTGCAGATCGGCGGTATCGAACTGCGCCACGGCCAGCGTCTCGGCGAC 
AACCTGGCGCTCGGCGCCCTGCACGACGAGTACGACGCGGTGTTCCTCGGCATCGGCCTGGCCGCCAGCAAG 
CGCCTCGGCCTGGAAGACGAGGACGCCCCCGGCCTGCTCGCCGCCACCGACTACATCCGCGAGCTGCGGCAG 
AGCGACGACCTGCTCGACCTGCCCGTCGCCGACCGTTGCATCGTCATCGGCGCCGGCAACACCGCCATCGAC 
ATGGCGGTGCAGATGAGCCGGCTCGGCGCCCGCGACGTCAACCTGGTCTACCGCCGTGGCTTCGAGGAAATG 
GGCGCCACCGGCCACGAGCAGGAGATCGCCAAGGCCAGCCAGGTGCGCCTGCTGACCTGGGCCCGACCGGAA 
CGGGTACTGCTTGACGAGCAAGGCCGGGTGCGCGGCATGCGCTTCGCCCGCACGCGCCTGGAGAACGGTCGC 
CTGGGCGACACCGGCGAGCACTTCGAACTGGCCGCCGACGCCATCTTCAAGGCCATCGGCCAGGCCTTCGAA 
GGCGCCAGCCTGGGCGATCCGCTGGCAGCGCAACTGCGGCGCGACGGCGAGCGCATCCAGGTCGACGGACAG 
ATGCGCACCAGCATCCCCGGCATCTACGCCGGCGGCGACTGCGTGGCGCTCGGCGAGGACCTCACCGTGCAG 
GCGGTGCAGCACGGCAAACTGGCGGCGGAAGCGATCCACGCCCAACTCATGCTCAACGTGGAGGCTGCGTGA