ViewGene
Locus Name:
GeneID:
Location:

GeneID:1068
TrivialName: PA14_73240
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_73240
PAO1 Ortholog Locus:PA5554
Sequence Length:1377
Protein Length:458
Start: 6522910
Stop: 6521534
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG08939.1|AE004967_10 (AE004967) ATP synthase beta chain [Pseudomonas aeruginosa PAO1]
Identities = 458/458 (100%), Positives = 458/458 (100%)
Sequence:
ATGAGTAGCGGACGTATCGTTCAAATCATCGGCGCCGTGATCGACGTGGAATTCCCGCGCGATGCCGTGCCG
AGCATCTATGAAGCCCTGAAGGTTCAGGGCGTTGAAACCACCCTGGAAGTCCAGCAGCAGCTGGGCGACGGC
GTGGTTCGTTCCATTGCGATGGGTTCCACCGAAGGCCTCAAGCGTGGCCTGAACGTGGACAGCACTGGTGCT
GCCATCTCCGTGCCGGTCGGTAAAGCGACCCTGGGCCGGATCATGGACGTACTGGGCAACCCGATCGACGAA
GCCGGCCCCATCGGCGAAGAAGAGCGCTGGGGCATCCACCGCGAAGCTCCGTCCTATGCCGACCAGGCTGGC
GGCAACGAGCTGCTGGAAACCGGCATCAAGGTGATCGACCTGGTCTGCCCGTTCGCCAAGGGCGGCAAGGTA
GGCCTGTTCGGCGGCGCCGGCGTGGGCAAGACCGTCAACATGATGGAACTGATCCGTAACATCGCCATCGAG
CACAGCGGTTATTCCGTGTTCGCGGGTGTGGGCGAGCGTACTCGTGAGGGTAACGACTTCTACCACGAGATG
AAGGACTCCAACGTACTGGACAAGGTAGCCCTGGTATACGGCCAGATGAACGAGCCGCCGGGCAACCGTCTG
CGCGTCGCACTGACCGGCCTGACCATGGCCGAGAAGTTCCGTGACGAAGGCCGTGACGTTCTGTTGTTCATC
GACAACATCTACCGTTACACCCTCGCCGGTACCGAAGTGTCCGCACTGCTGGGCCGTATGCCGTCCGCGGTG
GGTTATCAGCCGACCCTGGCCGAAGAGATGGGCGTTCTGCAGGAGCGCATCACCTCCACCAAGAAAGGCTCG
ATCACCTCGATCCAGGCCGTATACGTTCCCGCGGACGACCTCACCGACCCGTCCCCGGCGACCACCTTCGCC
CACCTGGACGCGACCGTCGTACTGTCCCGTGACATCGCCTCGCTGGGTATCTACCCCGCGGTCGACCCGCTG
GACTCGACCTCCCGTCAGCTCGATCCGCTGGTGATCGGCCAGGATCACTACGACACCGCTCGCGGCGTCCAG
TATGTTCTGCAGCGCTACAAGGAGCTGAAGGACATCATCGCGATCCTGGGCATGGACGAACTGTCCGAAGCC
GACAAGCTGCTGGTGGCGCGCGCTCGTAAGATCCAGCGCTTCCTGTCCCAGCCGTTCTTCGTAGCGGAAGTC
TTCACCGGCTCGCCGGGCAAGTACGTTTCCCTGAAGGACACCATCGCTGGCTTCAAGGGCATTCTCAACGGC
GACTACGATCACCTGCCGGAGCAGGCGTTCTACATGGTCGGCGGTATCGAAGAAGCGGTCGAGAAAGCCAAA
AAACTGTAA
Translation:
MSSGRIVQIIGAVIDVEFPRDAVPSIYEALKVQGVETTLEVQQQLGDGVVRSIAMGSTEGLKRGLNVDSTGA
AISVPVGKATLGRIMDVLGNPIDEAGPIGEEERWGIHREAPSYADQAGGNELLETGIKVIDLVCPFAKGGKV
GLFGGAGVGKTVNMMELIRNIAIEHSGYSVFAGVGERTREGNDFYHEMKDSNVLDKVALVYGQMNEPPGNRL
RVALTGLTMAEKFRDEGRDVLLFIDNIYRYTLAGTEVSALLGRMPSAVGYQPTLAEEMGVLQERITSTKKGS
ITSIQAVYVPADDLTDPSPATTFAHLDATVVLSRDIASLGIYPAVDPLDSTSRQLDPLVIGQDHYDTARGVQ
YVLQRYKELKDIIAILGMDELSEADKLLVARARKIQRFLSQPFFVAEVFTGSPGKYVSLKDTIAGFKGILNG
DYDHLPEQAFYMVGGIEEAVEKAKKL*
AnnotationID:1077GeneID:1068
AnnotatorUID: danlee
Modification Date/Time: 2004-02-05 18:06:17
Gene Name:atpD
Confidence Code:2
GeneProduct:ATP synthase beta chain
Cell Localization:()
Synonyms:uncD, papB
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(12) Energy metabolism
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG0055, KOG1350
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:






   
Genomic Context:






   
Comment:


















    ReferenceID:2139




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:17036




  
Author/Investigator(s):
        





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:
NCBI - Conserved Domain Search (BLASTP).






    
Reference Type:Blast (text/plain)







    
Data:PA5554_CDS.cgi


    		




 
URL:

















    ReferenceID:19281




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:35559




  
Author/Investigator(s):
        Clark MA, Baumann L, Baumann P.





  
Title:
        Sequence analysis of a 34.7-kb DNA segment from the genome of Buchnera aphidicola (endosymbiont of aphids) containing groEL, dnaA, the atp operon, gidA, and rho.




  
PubMed:
        9516544


MedLine:
        




    
Source:
Curr Microbiol. 1998 Mar;36(3):158-63.






    
Reference Type:Journal 







    
Data:


    		




 
URL:http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=9516544

















    ReferenceID:35579




  
Author/Investigator(s):
        Pancic PG, Strotmann H, Kowallik KV.





  
Title:
        Chloroplast ATPase genes in the diatom Odontella sinensis reflect cyanobacterial characters in structure and arrangement.




  
PubMed:
        1532839


MedLine:
        




    
Source:
J Mol Biol. 1992 Mar 20;224(2):529-36.






    
Reference Type:Journal 







    
Data:


    		




 
URL:http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=1532839

















    ReferenceID:35588




  
Author/Investigator(s):
        McCarn DF, Whitaker RA, Alam J, Vrba JM, Curtis SE.





  
Title:
        Genes encoding the alpha, gamma, delta, and four F0 subunits of ATP synthase constitute an operon in the cyanobacterium Anabaena sp. strain PCC 7120.




  
PubMed:
        2900236


MedLine:
        




    
Source:
J Bacteriol. 1988 Aug;170(8):3448-58.






    
Reference Type:Journal 







    
Data:


    		




 
URL:http://www.pubmedcentral.nih.gov/articlerender.fcgi?tool=pubmed&pubmedid=2900236









           
Homologs By Global Alignment 

           

       



     
Gene ID:1068
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
1925
                           PA5554_tr
                           translation of PA5554
                           458
                           99.99
                           99.99
                           0
                           2315.0
     

     
     
66005
                           gb|AAG08939.1|AE004967_10
                           (AE004967) ATP synthase beta chain [Pseudomonas aeruginosa PAO1]
                           458
                           99.99
                           99.99
                           0
                           2315.0
     

     
     
66006
                           gb|AAN70977.1|AE016742_6
                           (AE016794) ATP synthase F1, beta subunit [Pseudomonas putida KT2440]
                           458
                           93.88
                           96.94
                           0
                           2188.0
     

     
     
66007
                           gb|AAO59012.1|
                           (AE016876) ATP synthase F1, beta subunit [Pseudomonas syringae pv. tomato str. DC3000]
                           459
                           93.24
                           95.86
                           1
                           2166.0
     

     
     
66008
                           gb|AAM87677.1|AE014015_2
                           (AE014015) membrane-bound ATP synthase, F1 sector, beta-subunit [Yersinia pestis KIM]
                           460
                           86.30
                           92.60
                           2
                           2036.0
     

     






      

          
GC ORFID: 44070How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA5554Glimmer Score: 

          
Start: 5786599Stop: 5785223

          
Length: 1377


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TAATruncated Stop: 

          
Homolog: t_PA5554 translation of PA5554Homolog Bit Score 896.0

          
Other Homologs:  psyr_15may02_Scaffold2_revised_gene4132 (ORF: BLASTX 839.0), t_PA5554 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAGTAGCGGACGTATCGTTCAAATCATCGGCGCCGTGATCGACGTGGAATTCCCGCGCGATGCCGTGCCG 
AGCATCTATGAAGCCCTGAAGGTTCAGGGCGTTGAAACCACCCTGGAAGTCCAGCAGCAGCTGGGCGACGGC 
GTGGTTCGTTCCATTGCGATGGGTTCCACCGAAGGCCTCAAGCGTGGCCTGAACGTGGACAGCACTGGTGCT 
GCCATCTCCGTGCCGGTCGGTAAAGCGACCCTGGGCCGGATCATGGACGTACTGGGCAACCCGATCGACGAA 
GCCGGCCCCATCGGCGAAGAAGAGCGCTGGGGCATCCACCGCGAAGCTCCGTCCTATGCCGACCAGGCTGGC 
GGCAACGAGCTGCTGGAAACCGGCATCAAGGTGATCGACCTGGTCTGCCCGTTCGCCAAGGGCGGCAAGGTA 
GGCCTGTTCGGCGGCGCCGGCGTGGGCAAGACCGTCAACATGATGGAACTGATCCGTAACATCGCCATCGAG 
CACAGCGGTTATTCCGTGTTCGCGGGTGTGGGCGAGCGTACTCGTGAGGGTAACGACTTCTACCACGAGATG 
AAGGACTCCAACGTACTGGACAAGGTAGCCCTGGTATACGGCCAGATGAACGAGCCGCCGGGCAACCGTCTG 
CGCGTCGCACTGACCGGCCTGACCATGGCCGAGAAGTTCCGTGACGAAGGCCGTGACGTTCTGTTGTTCATC 
GACAACATCTACCGTTACACCCTCGCCGGTACCGAAGTGTCCGCACTGCTGGGCCGTATGCCGTCCGCGGTG 
GGTTATCAGCCGACCCTGGCCGAAGAGATGGGCGTTCTGCAGGAGCGCATCACCTCCACCAAGAAAGGCTCG 
ATCACCTCGATCCAGGCCGTATACGTTCCCGCGGACGACCTCACCGACCCGTCCCCGGCGACCACCTTCGCC 
CACCTGGACGCGACCGTCGTACTGTCCCGTGACATCGCCTCGCTGGGTATCTACCCCGCGGTCGACCCGCTG 
GACTCGACCTCCCGTCAGCTCGATCCGCTGGTGATCGGCCAGGATCACTACGACACCGCTCGCGGCGTCCAG 
TATGTTCTGCAGCGCTACAAGGAGCTGAAGGACATCATCGCGATCCTGGGCATGGACGAACTGTCCGAAGCC 
GACAAGCTGCTGGTGGCGCGCGCTCGTAAGATCCAGCGCTTCCTGTCCCAGCCGTTCTTCGTAGCGGAAGTC 
TTCACCGGCTCGCCGGGCAAGTACGTTTCCCTGAAGGACACCATCGCTGGCTTCAAGGGCATTCTCAACGGC 
GACTACGATCACCTGCCGGAGCAGGCGTTCTACATGGTCGGCGGTATCGAAGAAGCGGTCGAGAAAGCCAAA 
AAACTGTAA