ViewGene

Locus Name:
GeneID:
Location:

GeneID:1066
TrivialName: PA14_52190
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_52190
PAO1 Ortholog Locus:PA0933
Sequence Length:1353
Protein Length:450
Start: 4629941
Stop: 4628589
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04322.1|AE004527_9 (AE004527) probable RNA methyltransferase [Pseudomonas aeruginosa PAO1]
Identities = 450/450 (100%), Positives = 450/450 (100%)
Sequence:
ATGGCCAGAAATAAGGGCGGGCTGCGCTTCCAGCCCAGCGGTGGTGCGCGCGGTCCCGCGATACCGGTAGGC
AAGAAGCAGCGCCTGACCATCGAGCGCCTGGCCCATGACGGCCGAGGTATCGCCCACGAGGCGGGGATGACC
TGGTTCGTCAGCGGCGGGCTGCCTGGCGAGGAACTTGAGGCACGGGTGCTGGGCGCGCGAAGCAAGGTGGTC
GACGCGCGCAGCGAGCGCCTGTTCAGCAGTAGCGACCTGCGTCGCCGCGAGCCCTGCACTGTAGCGGGTCGC
TGCGGCGGCTGCACCCTGCAGCACCTGGAACACGGCGAGCAGTTGGCCCTGAAGCAGCGTACCTTGCAGGAG
CAGTTGCAGCGTTTCGCCGGGATCGAGCCGGAAGAATGGGCCGCCCCCCTGGTCGGGCCCGAATTCGGCTAT
CGGCGCCGCGCTCGGATCGCCGTGCGCTGGGATGCCAGGGCGCGGCGTCTGGATGTCGGCTTCCGTGCCTCG
GCCAGCCAGGAGATCGTCGCCTTCGATGAGTGCCTGGTCCTGGTGCCGCCTTTGCAAACGATTGCCCGTGCC
CTGCCTGCTCTTCTGCAGGACTTCCGCAAGCCGGAAAGCATCGGCCACGTGGAACTCTTCCATGGCACGGCC
AGTGCATTGCTGTTGCGGCATACGACGGCCCTGGTCGACGAGGATCGCCAGCGCCTGGCCGCTTTCTGCTCC
GCACACCAGGCCCAGCTCTGGCTGCAAGGTGCGGAACAGCCCTTGCCGGTGGAGCCGGCCGCCGAACTGGGC
TACTCCTTGGGTGACTGGCAACTGACTCTGGCGTACCGACCCGGAGACTTCGTCCAGGTCAATGCGCCGGTG
AACGAGTCGATGATCCGCCAGGCCCTTGACTGGCTGGCGCCGACCGCCGACGAGCGGGTCCTCGACCTGTTC
TGCGGGCTGGGCAATTTCTCCCTGCCGCTGGCGCGCCGGGTGGCGCGGGTAGTCGGGGTGGAGGGCGTGGCG
GCGATGGTCGAGCGGGCAGGCGCCAACGCGCTGGCCAATGGCCTTGGCAACGCGCACTTTTTCCAGGCCGAC
CTGTCCAAAGCGCTTGCCGAAGCGCCCTGGGCGGAGCAAGGTTTTACCGCTGTGCTGCTCGATCCGCCGCGC
GACGGCGCGTTCGAGGCGGTACGCGAAATGAGTTCTCTGGGTGCCCGGAGGGTAGTCTATGTATCCTGCAAT
CCGGCGACCCTGGCGCGCGATGCTGGCGAAATGGCCAGGCAGGGCTATCGTCTGAAGCGCGCCGGAATCCTC
GATATGTTTCCGCAGACCGCACATGTCGAGGCCATGGCTTTGTTCGAGGCAGGCTAG
Translation:
MARNKGGLRFQPSGGARGPAIPVGKKQRLTIERLAHDGRGIAHEAGMTWFVSGGLPGEELEARVLGARSKVV
DARSERLFSSSDLRRREPCTVAGRCGGCTLQHLEHGEQLALKQRTLQEQLQRFAGIEPEEWAAPLVGPEFGY
RRRARIAVRWDARARRLDVGFRASASQEIVAFDECLVLVPPLQTIARALPALLQDFRKPESIGHVELFHGTA
SALLLRHTTALVDEDRQRLAAFCSAHQAQLWLQGAEQPLPVEPAAELGYSLGDWQLTLAYRPGDFVQVNAPV
NESMIRQALDWLAPTADERVLDLFCGLGNFSLPLARRVARVVGVEGVAAMVERAGANALANGLGNAHFFQAD
LSKALAEAPWAEQGFTAVLLDPPRDGAFEAVREMSSLGARRVVYVSCNPATLARDAGEMARQGYRLKRAGIL
DMFPQTAHVEAMALFEAG*
AnnotationID:1075GeneID:1066
AnnotatorUID: danlee
Modification Date/Time: 2004-05-10 14:02:29
Gene Name:ygcA
Confidence Code:3
GeneProduct:probable RNA methyltransferase
Cell Localization:()
Synonyms:PA0933
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(26) Translation, post-translational modification, degradation
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG2265, pfam05958
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:
Homology:
COG2265, TrmA, SAM-dependent methyltransferases related to tRNA 
(uracil-5-)-methyltransferase.  Score: 395, 8e-111
pfam05958, tRNA_U5-meth_tr, tRNA (Uracil-5-)-methyltransferase. Score: 115, 1e-26
Structural Features:
Genomic Context:
Comment:
ReferenceID:2135
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:19277
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
Homologs By Global Alignment
Gene ID:1066

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
1923 PA0933_tr translation of PA0933 450 99.99 99.99 0 2316.0
65986 gb|AAG04322.1|AE004527_9 (AE004527) probable RNA methyltransferase [Pseudomonas aeruginosa PAO1] 450 99.99 99.99 0 2316.0
65987 gb|AAN67276.1|AE016354_3 (AE016780) RNA methyltransferase, TrmA family [Pseudomonas putida KT2440] 452 68.80 78.76 2 1592.0
65988 gb|AAO55213.1| (AE016861) RNA methyltransferase, TrmA family [Pseudomonas syringae pv. tomato str. DC3000] 451 65.41 76.94 1 1539.0
65992 gb|AAF95594.1| (AE004315) TrmA family RNA methyltransferase, putative [Vibrio cholerae O1 biovar eltor str. N16961] 458 43.44 59.82 26 885.0
GC ORFID: 44068How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA0933Glimmer Score:
Start: 323966Stop: 325318
Length: 1353
Start Codon: ATGTruncated Start:
Stop Codon: TAGTruncated Stop:
Homolog: t_PA0933 translation of PA0933Homolog Bit Score 896.0
Other Homologs: psyr_15may02_Scaffold5_revised_gene6452 (ORF: BLASTX 598.0), t_PA0933 (ORF: GLIMMER)
GC ORF Sequence
ATGGCCAGAAATAAGGGCGGGCTGCGCTTCCAGCCCAGCGGTGGTGCGCGCGGTCCCGCGATACCGGTAGGC
AAGAAGCAGCGCCTGACCATCGAGCGCCTGGCCCATGACGGCCGAGGTATCGCCCACGAGGCGGGGATGACC
TGGTTCGTCAGCGGCGGGCTGCCTGGCGAGGAACTTGAGGCACGGGTGCTGGGCGCGCGAAGCAAGGTGGTC
GACGCGCGCAGCGAGCGCCTGTTCAGCAGTAGCGACCTGCGTCGCCGCGAGCCCTGCACTGTAGCGGGTCGC
TGCGGCGGCTGCACCCTGCAGCACCTGGAACACGGCGAGCAGTTGGCCCTGAAGCAGCGTACCTTGCAGGAG
CAGTTGCAGCGTTTCGCCGGGATCGAGCCGGAAGAATGGGCCGCCCCCCTGGTCGGGCCCGAATTCGGCTAT
CGGCGCCGCGCTCGGATCGCCGTGCGCTGGGATGCCAGGGCGCGGCGTCTGGATGTCGGCTTCCGTGCCTCG
GCCAGCCAGGAGATCGTCGCCTTCGATGAGTGCCTGGTCCTGGTGCCGCCTTTGCAAACGATTGCCCGTGCC
CTGCCTGCTCTTCTGCAGGACTTCCGCAAGCCGGAAAGCATCGGCCACGTGGAACTCTTCCATGGCACGGCC
AGTGCATTGCTGTTGCGGCATACGACGGCCCTGGTCGACGAGGATCGCCAGCGCCTGGCCGCTTTCTGCTCC
GCACACCAGGCCCAGCTCTGGCTGCAAGGTGCGGAACAGCCCTTGCCGGTGGAGCCGGCCGCCGAACTGGGC
TACTCCTTGGGTGACTGGCAACTGACTCTGGCGTACCGACCCGGAGACTTCGTCCAGGTCAATGCGCCGGTG
AACGAGTCGATGATCCGCCAGGCCCTTGACTGGCTGGCGCCGACCGCCGACGAGCGGGTCCTCGACCTGTTC
TGCGGGCTGGGCAATTTCTCCCTGCCGCTGGCGCGCCGGGTGGCGCGGGTAGTCGGGGTGGAGGGCGTGGCG
GCGATGGTCGAGCGGGCAGGCGCCAACGCGCTGGCCAATGGCCTTGGCAACGCGCACTTTTTCCAGGCCGAC
CTGTCCAAAGCGCTTGCCGAAGCGCCCTGGGCGGAGCAAGGTTTTACCGCTGTGCTGCTCGATCCGCCGCGC
GACGGCGCGTTCGAGGCGGTACGCGAAATGAGTTCTCTGGGTGCCCGGAGGGTAGTCTATGTATCCTGCAAT
CCGGCGACCCTGGCGCGCGATGCTGGCGAAATGGCCAGGCAGGGCTATCGTCTGAAGCGCGCCGGAATCCTC
GATATGTTTCCGCAGACCGCACATGTCGAGGCCATGGCTTTGTTCGAGGCAGGCTAG