ViewGene
Locus Name:
GeneID:
Location:

GeneID:1065
TrivialName: PA14_52660
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_52660
PAO1 Ortholog Locus:PA0899
Sequence Length:1347
Protein Length:448
Start: 4668706
Stop: 4667360
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04288.1|AE004524_5 (AE004524) succinylarginine dihydrolase [Pseudomonas aeruginosa PAO1]
Identities = 447/448 (99%), Positives = 448/448 (100%)
Sequence:
ATGAATGCCCATGAAGTGAATTTCGACGGCCTGGTCGGCCCGACCCACAACTACGGCGGCCTGTCCTACGGC
AATGTCGCTTCGCAAAGCAACAGCCAGGCGGTGTCCAACCCGAAGGAAGCGGCGAAGCAGGGCCTGGCGAAG
ATGAAGGCGCTGATGGAGATGGGTTTCAAGCAGGGGGTGCTCGCCCCGCAAGCCCGCCCGGATACCGCTGCG
CTACGTAGCCTGGGCTTCTCCGGCAGCGACGAGGAGGTGATCCGCCGCGCGGCGAAGGAAGCGATGCCTCTC
CTCGCCGCCTGCAGTTCGGCGTCGAGCATGTGGACCGCCAATGCCGCCACGGTCAGCCCGAGCGCCGACACC
GCCGACGGCCGCGTGCATTTCACCGCGGCCAACCTGAACTGCAAGTTCCATCGATCCATCGAGCATCCCACC
ACCAGCCGCGTGCTGGCGGCGATGTTCAACGACGAGCGGTATTTCGCCCATCACGCGGCGCTGCCGGCGGTG
AGCCAGTTCGGCGACGAAGGCGCGGCCAACCACACGCGCTTCTGCAAGGACTATGGCGATGCCGGCGTGGAG
TTCTTCGTCTTCGGTCGCAGCGCCTTCGACAGTCGCTTCCCGGCGCCGCAACGCTATCCGGCGCGCCAGACC
CTGGAAGCCTGCCAGGCCGTCGCGCGCCTGCACGGGCTGAGCGAGGCCGGAGTGGTCTACGCTCAACAGAAC
CCGGCGGTGATCGACCAGGGCGTGTTCCACAACGATGTGATCTCGGTGGGCAATGGCGAGGTGCTGTTCCAT
CACGAGGACGCCTTCCTCGATACCGAGAAGGTCCTTGCCGAACTGCACGACAAGCTTGGCCGCCGCGGCGGC
CGCTTCCGCGCCATCTGCGTGCCGCGCGACCAGGTCGCGGTGGAGGACGCGGTGAAGTCCTATCTGTTCAAC
AGCCAACTGCTGTCGAAGGCCGACGGTTCGATGCTGCTGGTGGTACCGGAGGAGTGCCGGAACAACCCGCGG
GTCTGGAACTACCTGGACCAGCTCACCGGCGACGACGGCCCGATCCGCGAAGTGAAGGTCTTCGACCTCAAG
CAGAGCATGCAGAACGGCGGCGGCCCGGCCTGCCTGCGCTTGCGCGTGGCGCTGCAGGAGCGGGAGCTGGCG
GCGGTGAATCCGGGGGTGATCATGAGCGCCGGCCTGTACGACACGCTGGTAGCCTGGGTCGACCGGCACTAC
CGCGACCGCCTGAGCGAAACCGACCTGGCCGACCCGCAACTGCTGCTGGAGTGCCGGACGGCATTGGATGAA
CTGACGCAGATCCTTAAACTGGGTTCGGTTTATTCCTTCCAACTCGATTGA
Translation:
MNAHEVNFDGLVGPTHNYGGLSYGNVASQSNSQAVSNPKEAAKQGLAKMKALMEMGFKQGVLAPQARPDTAA
LRSLGFSGSDEEVIRRAAKEAMPLLAACSSASSMWTANAATVSPSADTADGRVHFTAANLNCKFHRSIEHPT
TSRVLAAMFNDERYFAHHAALPAVSQFGDEGAANHTRFCKDYGDAGVEFFVFGRSAFDSRFPAPQRYPARQT
LEACQAVARLHGLSEAGVVYAQQNPAVIDQGVFHNDVISVGNGEVLFHHEDAFLDTEKVLAELHDKLGRRGG
RFRAICVPRDQVAVEDAVKSYLFNSQLLSKADGSMLLVVPEECRNNPRVWNYLDQLTGDDGPIREVKVFDLK
QSMQNGGGPACLRLRVALQERELAAVNPGVIMSAGLYDTLVAWVDRHYRDRLSETDLADPQLLLECRTALDE
LTQILKLGSVYSFQLD*
AnnotationID:1074GeneID:1065
AnnotatorUID: danlee
Modification Date/Time: 2004-05-06 11:11:19
Gene Name:aruB
Confidence Code:1
GeneProduct:succinylarginine dihydrolase
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(2) Amino acid biosynthesis and metabolism
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG3724, pfam04996
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
COG3724, AstB, Succinylarginine dihydrolase. Score: 721, 0.0
pfam04996, AstB, Succinylarginine dihydrolase. Score: 719, 0.0






   
Genomic Context:
Arginine-ornithine catabolic locus, adjacent to arginine-ornithine transport locus






   
Comment:


















    ReferenceID:2133




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:16989




  
Author/Investigator(s):
        





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:
NCBI Conserved Domain Search.






    
Reference Type:Blast (text/plain)







    
Data:PA0899_CDS.cgi


    		




 
URL:

















    ReferenceID:19275




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:32007




  
Author/Investigator(s):
        Itoh Y.





  
Title:
        Cloning and characterization of the aru genes encoding enzymes of the catabolic arginine succinyltransferase pathway in Pseudomonas aeruginosa.




  
PubMed:
        98053840


MedLine:
        




    
Source:
J Bacteriol. 1997 Dec;179(23):7280-90.






    
Reference Type:Journal 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:1065
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
1922
                           PA0899_tr
                           translation of PA0899
                           448
                           99.77
                           99.99
                           0
                           2316.0
     

     
     
65965
                           gb|AAG04288.1|AE004524_5
                           (AE004524) succinylarginine dihydrolase [Pseudomonas aeruginosa PAO1]
                           448
                           99.77
                           99.99
                           0
                           2316.0
     

     
     
65966
                           gb|AAC46013.1|
                           (AF011922) succinylarginine dihydrolase [Pseudomonas aeruginosa]
                           448
                           99.77
                           99.99
                           0
                           2316.0
     

     
     
65967
                           gb|AAN70052.1|AE016644_6
                           (AE016790) succinylarginine dihydrolase [Pseudomonas putida KT2440]
                           449
                           83.96
                           90.64
                           1
                           1971.0
     

     
     
65968
                           gb|AAO55355.1|
                           (AE016862) succinylarginine dihydrolase [Pseudomonas syringae pv. tomato str. DC3000]
                           448
                           79.24
                           88.83
                           0
                           1877.0
     

     






      

          
GC ORFID: 44067How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA0899Glimmer Score: 

          
Start: 285201Stop: 286547

          
Length: 1347


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA0899 translation of PA0899Homolog Bit Score 896.0

          
Other Homologs:  psyr_15may02_Scaffold8_revised_gene7820 (ORF: BLASTX 733.0), t_PA0899 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAATGCCCATGAAGTGAATTTCGACGGCCTGGTCGGCCCGACCCACAACTACGGCGGCCTGTCCTACGGC 
AATGTCGCTTCGCAAAGCAACAGCCAGGCGGTGTCCAACCCGAAGGAAGCGGCGAAGCAGGGCCTGGCGAAG 
ATGAAGGCGCTGATGGAGATGGGTTTCAAGCAGGGGGTGCTCGCCCCGCAAGCCCGCCCGGATACCGCTGCG 
CTACGTAGCCTGGGCTTCTCCGGCAGCGACGAGGAGGTGATCCGCCGCGCGGCGAAGGAAGCGATGCCTCTC 
CTCGCCGCCTGCAGTTCGGCGTCGAGCATGTGGACCGCCAATGCCGCCACGGTCAGCCCGAGCGCCGACACC 
GCCGACGGCCGCGTGCATTTCACCGCGGCCAACCTGAACTGCAAGTTCCATCGATCCATCGAGCATCCCACC 
ACCAGCCGCGTGCTGGCGGCGATGTTCAACGACGAGCGGTATTTCGCCCATCACGCGGCGCTGCCGGCGGTG 
AGCCAGTTCGGCGACGAAGGCGCGGCCAACCACACGCGCTTCTGCAAGGACTATGGCGATGCCGGCGTGGAG 
TTCTTCGTCTTCGGTCGCAGCGCCTTCGACAGTCGCTTCCCGGCGCCGCAACGCTATCCGGCGCGCCAGACC 
CTGGAAGCCTGCCAGGCCGTCGCGCGCCTGCACGGGCTGAGCGAGGCCGGAGTGGTCTACGCTCAACAGAAC 
CCGGCGGTGATCGACCAGGGCGTGTTCCACAACGATGTGATCTCGGTGGGCAATGGCGAGGTGCTGTTCCAT 
CACGAGGACGCCTTCCTCGATACCGAGAAGGTCCTTGCCGAACTGCACGACAAGCTTGGCCGCCGCGGCGGC 
CGCTTCCGCGCCATCTGCGTGCCGCGCGACCAGGTCGCGGTGGAGGACGCGGTGAAGTCCTATCTGTTCAAC 
AGCCAACTGCTGTCGAAGGCCGACGGTTCGATGCTGCTGGTGGTACCGGAGGAGTGCCGGAACAACCCGCGG 
GTCTGGAACTACCTGGACCAGCTCACCGGCGACGACGGCCCGATCCGCGAAGTGAAGGTCTTCGACCTCAAG 
CAGAGCATGCAGAACGGCGGCGGCCCGGCCTGCCTGCGCTTGCGCGTGGCGCTGCAGGAGCGGGAGCTGGCG 
GCGGTGAATCCGGGGGTGATCATGAGCGCCGGCCTGTACGACACGCTGGTAGCCTGGGTCGACCGGCACTAC 
CGCGACCGCCTGAGCGAAACCGACCTGGCCGACCCGCAACTGCTGCTGGAGTGCCGGACGGCATTGGATGAA 
CTGACGCAGATCCTTAAACTGGGTTCGGTTTATTCCTTCCAACTCGATTGA