ViewGene

Locus Name:
GeneID:
Location:

GeneID:1063
TrivialName: PA14_46140
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_46140
PAO1 Ortholog Locus:PA1416
Sequence Length:1383
Protein Length:460
Start: 4103096
Stop: 4104478
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04805.1|AE004571_4 (AE004571) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 460/460 (100%), Positives = 460/460 (100%)
Sequence:
ATGGACGATTCCGAACTCTACCGCTCCCTCTGCGAGATCCTCGGCGCCCGTGGCGTGCGCGACAGTGCCGCG
CTCGCCGGGCAGGACCCCGGCTACCATCCGCAGAACCTCGCCGGAAGCTTCCTGGTCCTGCCGGAAAGCACC
GACCAGGTCGCTGCCGTGGTGCGTCTGTGCCGCCAGGCGGGACGCGCCCTGGTGCCCCAGGGCGGACTCACC
GGTCTGGTCGGCGGCGGCGCCGCGCAAGCCGGCGACGTGCTGCTCTCGCTGCGCAGGCTGAACCGCATACAC
CGGCTGGATGCGGCCAGCCAGACCCTCGACCTCGACGCCGGCGTCACCCTCGAACAGGCCCAGGCGCTGGCC
GCCGAGGCCGGACTCGACCCCGGCATCGATCTCGCCGCGCGCGGCAGCGCCAGCGTCGGCGGGCTGGTAGCG
ACCAACGCCGGCGGCATCCGCGCCTTCCGCTTCGGCACCATGCGCCAGCGCGTGCTCGGCCTGGAAGCGGTA
CTCGCCGACGGCAGCGTCTACAGCGACCTGCGCGGGCTGCTGAAGAACACCACCGGCTACGACCTCAAGCAG
TTGTTCGTCGGCGCCGAAGGCACCCTCGGCATCGTCACCCGTGCGGTACTGCGCCTGGAGCCGTTGCAGCGT
CCCGGCGCCACCGCCCTGCTCGGCCTGCCCGACGTCGACGCGGCGATCACCATCGCCGCGCGCCTGCGCCGC
GAGCACGCCGAACGCCTGTTCGCCTGCGAGATCCTCTGGCACGACTACCTGCAATGCACCGCCGCACCCATG
GGCGACAGCGCGCCGAGCCTGGCGCCCTGCCCTCTCTACCTGCTGGTGGAACTGGCCGAGGACCGCCACCTG
GATGCCGGCGAGGCGCTCACCGCCCTGCTGGAAGACTGCTTCGAGGACGGGCTGGTGGAAGACGCCCTGCTC
GCCGCCAACGAAACCCAGCGCCTGGCCATCTGGCGCCTGCGCGAAGACTCCGACGCGGCCATCCACGCCGGC
GTCGACAGCCTGTCCTTCGACGTATCGCTGCCGGTGCCGGCCCTGGCCGGCTACGTCGAGCGCATCCGGCGG
CGCCTGGACGACCTGGTGAAGGGCATGCAGGTCTTCCTCTTCGGCCATTTCCTCGACGGCAACCTGCACGTC
ATGCTCGCCGCCGACGTCCCGCTGCTGCCGCTGCACCAGGCGGTGGAGGAAATCCTCTACGGCGAGTTGGGC
GAATGCGCTGGCGTGATCTCCGCCGAGCACGGCATCGGCCTGGAGAAGAAGGAAGCCCTGGGACGCTACGCC
GATCCGCTGAAGCTCGCGCTGATGGCGCAGATCAAGGAACTGCTCGACCCCAGCGGACTGTTCAACCCGGGC
AAGGTCATACCCTGA
Translation:
MDDSELYRSLCEILGARGVRDSAALAGQDPGYHPQNLAGSFLVLPESTDQVAAVVRLCRQAGRALVPQGGLT
GLVGGGAAQAGDVLLSLRRLNRIHRLDAASQTLDLDAGVTLEQAQALAAEAGLDPGIDLAARGSASVGGLVA
TNAGGIRAFRFGTMRQRVLGLEAVLADGSVYSDLRGLLKNTTGYDLKQLFVGAEGTLGIVTRAVLRLEPLQR
PGATALLGLPDVDAAITIAARLRREHAERLFACEILWHDYLQCTAAPMGDSAPSLAPCPLYLLVELAEDRHL
DAGEALTALLEDCFEDGLVEDALLAANETQRLAIWRLREDSDAAIHAGVDSLSFDVSLPVPALAGYVERIRR
RLDDLVKGMQVFLFGHFLDGNLHVMLAADVPLLPLHQAVEEILYGELGECAGVISAEHGIGLEKKEALGRYA
DPLKLALMAQIKELLDPSGLFNPGKVIP*
AnnotationID:1072GeneID:1063
AnnotatorUID: diggins
Modification Date/Time: 2005-05-26 18:06:22
Gene Name:
Confidence Code:3
GeneProduct:putative oxidoreductase
Cell Localization:()
Synonyms:PA1416
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(20) Putative enzymes
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG0277,pfam02913,pfam01565
Secondary Functional Category(ies):energy production and conversion
EC Number:
Status:ACTIVE
Pathway:
Homology:
>emb|CAC49108.1| (AL603644) putative oxidoreductase protein [Sinorhizobium meliloti]
          Length = 442

 Score =  306 bits (785), Expect = 1e-82
 Identities = 182/422 (43%), Positives = 245/422 (58%), Gaps = 12/422 (2%)

>emb|CAE31386.1| (BX640439) putative oxidoreductase [Bordetella bronchiseptica]
          Length = 471

 Score =  297 bits (761), Expect = 8e-80
 Identities = 176/427 (41%), Positives = 244/427 (57%), Gaps = 12/427 (2%)
Structural Features:
COG0277, GlcD, FAD/FMN-containing dehydrogenases 
[Energy production and conversion]
CD-Length = 459 residues,  99.6% aligned
Score =  285 bits (729), Expect = 9e-78
Identities = 175/461 (37%), Positives = 233/461 (50%), Gaps = 13/461 (2%)

pfam02913, FAD-oxidase_C, FAD linked oxidases, C-terminal domain.
CD-Length = 247 residues,  98.0% aligned
Score =  158 bits (400), Expect = 1e-39
Identities = 78/247 (31%), Positives = 107/247 (43%), Gaps = 12/247 (4%)

pfam01565, FAD_binding_4, FAD binding domain. 
CD-Length = 158 residues,  99.4% aligned
Score =  137 bits (346), Expect = 3e-33
Identities = 68/161 (42%), Positives = 95/161 (59%), Gaps = 4/161 (2%)
Genomic Context:
Comment:
ReferenceID:2129
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:19271
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
ReferenceID:37431
Author/Investigator(s):
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:Misc (text/plain)
Data:1063_cdd.html
URL:
Homologs By Global Alignment
Gene ID:1063

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
1920 PA1416_tr translation of PA1416 460 99.99 99.99 0 2318.0
65948 gb|AAG04805.1|AE004571_4 (AE004571) conserved hypothetical protein [Pseudomonas aeruginosa PAO1] 460 99.99 99.99 0 2318.0
65950 emb|CAC49108.1| (AL603644) putative oxidoreductase protein [Sinorhizobium meliloti] 473 40.16 54.33 44 793.0
65951 emb|CAE31386.1| (BX640439) putative oxidoreductase [Bordetella bronchiseptica] [Bordetella bronchiseptica RB50] 490 39.38 53.87 49 776.0
65952 emb|CAE40211.1| (BX640425) putative oxidoreductase [Bordetella parapertussis] 490 39.38 53.87 49 776.0
GC ORFID: 44065How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA1416Glimmer Score:
Start: 850813Stop: 849431
Length: 1383
Start Codon: ATGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: t_PA1416 translation of PA1416Homolog Bit Score 897.0
Other Homologs: t_PA1416 (ORF: GLIMMER)
GC ORF Sequence
ATGGACGATTCCGAACTCTACCGCTCCCTCTGCGAGATCCTCGGCGCCCGTGGCGTGCGCGACAGTGCCGCG
CTCGCCGGGCAGGACCCCGGCTACCATCCGCAGAACCTCGCCGGAAGCTTCCTGGTCCTGCCGGAAAGCACC
GACCAGGTCGCTGCCGTGGTGCGTCTGTGCCGCCAGGCGGGACGCGCCCTGGTGCCCCAGGGCGGACTCACC
GGTCTGGTCGGCGGCGGCGCCGCGCAAGCCGGCGACGTGCTGCTCTCGCTGCGCAGGCTGAACCGCATACAC
CGGCTGGATGCGGCCAGCCAGACCCTCGACCTCGACGCCGGCGTCACCCTCGAACAGGCCCAGGCGCTGGCC
GCCGAGGCCGGACTCGACCCCGGCATCGATCTCGCCGCGCGCGGCAGCGCCAGCGTCGGCGGGCTGGTAGCG
ACCAACGCCGGCGGCATCCGCGCCTTCCGCTTCGGCACCATGCGCCAGCGCGTGCTCGGCCTGGAAGCGGTA
CTCGCCGACGGCAGCGTCTACAGCGACCTGCGCGGGCTGCTGAAGAACACCACCGGCTACGACCTCAAGCAG
TTGTTCGTCGGCGCCGAAGGCACCCTCGGCATCGTCACCCGTGCGGTACTGCGCCTGGAGCCGTTGCAGCGT
CCCGGCGCCACCGCCCTGCTCGGCCTGCCCGACGTCGACGCGGCGATCACCATCGCCGCGCGCCTGCGCCGC
GAGCACGCCGAACGCCTGTTCGCCTGCGAGATCCTCTGGCACGACTACCTGCAATGCACCGCCGCACCCATG
GGCGACAGCGCGCCGAGCCTGGCGCCCTGCCCTCTCTACCTGCTGGTGGAACTGGCCGAGGACCGCCACCTG
GATGCCGGCGAGGCGCTCACCGCCCTGCTGGAAGACTGCTTCGAGGACGGGCTGGTGGAAGACGCCCTGCTC
GCCGCCAACGAAACCCAGCGCCTGGCCATCTGGCGCCTGCGCGAAGACTCCGACGCGGCCATCCACGCCGGC
GTCGACAGCCTGTCCTTCGACGTATCGCTGCCGGTGCCGGCCCTGGCCGGCTACGTCGAGCGCATCCGGCGG
CGCCTGGACGACCTGGTGAAGGGCATGCAGGTCTTCCTCTTCGGCCATTTCCTCGACGGCAACCTGCACGTC
ATGCTCGCCGCCGACGTCCCGCTGCTGCCGCTGCACCAGGCGGTGGAGGAAATCCTCTACGGCGAGTTGGGC
GAATGCGCTGGCGTGATCTCCGCCGAGCACGGCATCGGCCTGGAGAAGAAGGAAGCCCTGGGACGCTACGCC
GATCCGCTGAAGCTCGCGCTGATGGCGCAGATCAAGGAACTGCTCGACCCCAGCGGACTGTTCAACCCGGGC
AAGGTCATACCCTGA