ViewGene
Locus Name:
GeneID:
Location:

GeneID:1062
TrivialName: PA14_33030
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_33030
PAO1 Ortholog Locus:PA2443
Sequence Length:1377
Protein Length:458
Start: 2890441
Stop: 2891817
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG05831.1|AE004671_7 (AE004671) L-serine dehydratase [Pseudomonas aeruginosa PAO1]
Identities = 454/458 (99%), Positives = 455/458 (99%)
Sequence:
ATGTCCCTGAGTGTCTTCGATCTGTTCAAGATCGGCATCGGGCCGTCCAGCTCCCACACCGTGGGGCCGATG
CGTGCCGCTGCGCGCTTCGCCGAGGGGCTGAGGCGCGAGGGGTTGCTGGAGGCCACTGCCAGCGTCAAGGTC
GAGCTGTACGGCTCGCTCGGCGCCACCGGCAAGGGCCACGGCAGCGACAAGGCGGTACTGCTCGGCCTGGAG
GGCGAGCAGCCGGACACGGTGGATACCGCCGCGATTCCCGCCCGGCTCGATGCCATCCGTTCCAGCGGCGAG
CTGCGCCTGCTCGGCGAGCGGCCGATCCGCTTCGTCGAGAAGGAACACCTGGCGCTGATCCGCAAGCCGCTG
GCCTACCATCCCAACGGCATGATCTTCCGTGCCTTCGACGCCGCCGGCCTGCAGGTCCGCAGCCGCGAGTAC
TACTCGGTGGGCGGCGGTTTCGTGGTCGACGATGAGGCCGCCGGCCTCGACCGCATCGTCGAGGACCGCACG
CCGCTGGTGTTCCCCTTCAAGACCGCGCGGCAACTGCTCGACCATTGCGTCCGCGAAGGCCTGTCGATCAGC
CAGTTGATGGCCGAGAACGAGAAGGCCTGGCGCCCCGCCGAGGAAACCCGCGCCGGCCTGCTGCGTATCTGG
CAGGTGATGCAGGATTGCGTCGAGGCCGGCTGCCGCAACGAGGGCATCATGCCCGGCGGACTGAAGGTCAGG
CGCCGCGCGGCGGCGCTCCACCGCCAGTTGTGCCAGCGGCCGGAGGCCGGCCTGCGCGATGCTCTCAGCGTG
CTCGACTGGGTCAACCTCTACGCCCTGGCGGTGAACGAGGAGAACGCCAGCGGCGGCCGCGTGGTGACCGCG
CCGACCAACGGCGCGGCGGGGATCATTCCGGCGGTGCTGCATTACTACGCGCGCTTCATCCCCGGGGCCGAC
GACGACGGCGTGGTGCGCTTCCTGCTCACCGCCGCGGCGATCGGCATCCTCTACAAGGAAAACGCCTCGATC
TCCGGCGCCGAGGTCGGTTGCCAGGGCGAGGTTGGGGTGGCCTGCTCGATGGCCGCCGGGGCGCTCTGCGAA
GTGCTCGGCGGTAGCGTGCAGCAGGTCGAGAACGCCGCCGAGATCGGCATGGAGCACAACCTCGGGCTGACC
TGCGACCCGGTCGGCGGGCTGGTCCAGGTGCCCTGCATCGAACGCAACGCGATgGCTTCGGTGAAGGCGATC
AACGCGGCGCGCAtggcccTGCGCGGCGACGGCCAGCACTtcATCTCTCTCGACAAgGTCATCCGCACCATG
CGCCAGACCGGCGCCGACATGAAAAGCAAATATAAGGAAACCGCGCGCGGCGGCCTCGCCGTGAACATCATC
GAATGCTGA
Translation:
MSLSVFDLFKIGIGPSSSHTVGPMRAAARFAEGLRREGLLEATASVKVELYGSLGATGKGHGSDKAVLLGLE
GEQPDTVDTAAIPARLDAIRSSGELRLLGERPIRFVEKEHLALIRKPLAYHPNGMIFRAFDAAGLQVRSREY
YSVGGGFVVDDEAAGLDRIVEDRTPLVFPFKTARQLLDHCVREGLSISQLMAENEKAWRPAEETRAGLLRIW
QVMQDCVEAGCRNEGIMPGGLKVRRRAAALHRQLCQRPEAGLRDALSVLDWVNLYALAVNEENASGGRVVTA
PTNGAAGIIPAVLHYYARFIPGADDDGVVRFLLTAAAIGILYKENASISGAEVGCQGEVGVACSMAAGALCE
VLGGSVQQVENAAEIGMEHNLGLTCDPVGGLVQVPCIERNAMASVKAINAARMALRGDGQHFISLDKVIRTM
RQTGADMKSKYKETARGGLAVNIIEC*
AnnotationID:1071GeneID:1062
AnnotatorUID: urbach
Modification Date/Time: 2003-12-03 11:11:43
Gene Name:sdaA
Confidence Code:2
GeneProduct: L-serine dehydratase
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(2) Amino acid biosynthesis and metabolism
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAG58243.1|AE005540_8 (AE005540) putative L-serine deaminase [Escherichia coli O157:H7
           EDL93






 
Structural Features:






   
Genomic Context:






   
Comment:


















    ReferenceID:2127




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:19269




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:1062
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
1918
                           PA2443_tr
                           translation of PA2443
                           458
                           99.12
                           99.34
                           0
                           2321.0
     

     
     
65839
                           gb|AAG05831.1|AE004671_7
                           (AE004671) L-serine dehydratase [Pseudomonas aeruginosa PAO1]
                           458
                           99.12
                           99.34
                           0
                           2321.0
     

     
     
65840
                           gb|AAN66612.1|AE016288_11
                           (AE016777) L-serine dehydratase, iron-sulfur-dependent, single chain form [Pseudomonas putida KT2440]
                           458
                           85.15
                           90.82
                           0
                           2028.0
     

     
     
65841
                           gb|AAQ60542.1|
                           (AE016920) L-serine dehydratase [Chromobacterium violaceum ATCC 12472]
                           466
                           71.67
                           81.33
                           8
                           1722.0
     

     
     
65842
                           emb|CAD17084.1|
                           (AL646074) PROBABLE L-SERINE DEHYDRATASE (L-SERINE DEAMINASE ) PROTEIN [Ralstonia solanacearum]
                           459
                           69.71
                           79.52
                           2
                           1622.0
     

     






      

          
GC ORFID: 44064How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA2443Glimmer Score: 

          
Start: 2063475Stop: 2062099

          
Length: 1377


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA2443 translation of PA2443Homolog Bit Score 898.0

          
Other Homologs:  t_PA5379 (ORF: BLASTX 559.0), psyr_15may02_Scaffold2_revised_gene3452 (ORF: BLASTX 551.0), t_PA2443 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGTCCCTGAGTGTCTTCGATCTGTTCAAGATCGGCATCGGGCCGTCCAGCTCCCACACCGTGGGGCCGATG 
CGTGCCGCTGCGCGCTTCGCCGAGGGGCTGAGGCGCGAGGGGTTGCTGGAGGCCACTGCCAGCGTCAAGGTC 
GAGCTGTACGGCTCGCTCGGCGCCACCGGCAAGGGCCACGGCAGCGACAAGGCGGTACTGCTCGGCCTGGAG 
GGCGAGCAGCCGGACACGGTGGATACCGCCGCGATTCCCGCCCGGCTCGATGCCATCCGTTCCAGCGGCGAG 
CTGCGCCTGCTCGGCGAGCGGCCGATCCGCTTCGTCGAGAAGGAACACCTGGCGCTGATCCGCAAGCCGCTG 
GCCTACCATCCCAACGGCATGATCTTCCGTGCCTTCGACGCCGCCGGCCTGCAGGTCCGCAGCCGCGAGTAC 
TACTCGGTGGGCGGCGGTTTCGTGGTCGACGATGAGGCCGCCGGCCTCGACCGCATCGTCGAGGACCGCACG 
CCGCTGGTGTTCCCCTTCAAGACCGCGCGGCAACTGCTCGACCATTGCGTCCGCGAAGGCCTGTCGATCAGC 
CAGTTGATGGCCGAGAACGAGAAGGCCTGGCGCCCCGCCGAGGAAACCCGCGCCGGCCTGCTGCGTATCTGG 
CAGGTGATGCAGGATTGCGTCGAGGCCGGCTGCCGCAACGAGGGCATCATGCCCGGCGGACTGAAGGTCAGG 
CGCCGCGCGGCGGCGCTCCACCGCCAGTTGTGCCAGCGGCCGGAGGCCGGCCTGCGCGATGCTCTCAGCGTG 
CTCGACTGGGTCAACCTCTACGCCCTGGCGGTGAACGAGGAGAACGCCAGCGGCGGCCGCGTGGTGACCGCG 
CCGACCAACGGCGCGGCGGGGATCATTCCGGCGGTGCTGCATTACTACGCGCGCTTCATCCCCGGGGCCGAC 
GACGACGGCGTGGTGCGCTTCCTGCTCACCGCCGCGGCGATCGGCATCCTCTACAAGGAAAACGCCTCGATC 
TCCGGCGCCGAGGTCGGTTGCCAGGGCGAGGTTGGGGTGGCCTGCTCGATGGCCGCCGGGGCGCTCTGCGAA 
GTGCTCGGCGGTAGCGTGCAGCAGGTCGAGAACGCCGCCGAGATCGGCATGGAGCACAACCTCGGGCTGACC 
TGCGACCCGGTCGGCGGGCTGGTCCAGGTGCCCTGCATCGAACGCAACGCGATgGCTTCGGTGAAGGCGATC 
AACGCGGCGCGCAtggcccTGCGCGGCGACGGCCAGCACTtcATCTCTCTCGACAAgGTCATCCGCACCATG 
CGCCAGACCGGCGCCGACATGAAAAGCAAATATAAGGAAACCGCGCGCGGCGGCCTCGCCGTGAACATCATC 
GAATGCTGA