ViewGene

Locus Name:
GeneID:
Location:

GeneID: 1061

TrivialName: PA14_05220

AnnotatorUID:

Modification Date/Time: 2006-04-06 13:01:23

LocusName: PA14_05220

PAO1 Ortholog Locus: PA0399

Sequence Length: 1374

Protein Length: 457

Start: 455375

Stop: 456748

Strand: +

Type:

ChromosomeID: 2

Status: ACTIVE

Frame Discrepancy: FALSE

Missense Discrepancy: FALSE

Comments:
Homology: gb|AAG03788.1|AE004477_5 (AE004477) cystathionine beta-synthase [Pseudomonas aeruginosa PAO1] Identities = 455/456 (99%), Positives = 456/456 (100%)

Sequence:

ATGACTTCCGACTCACGCCCCGCCGTGCTCGACCTGATCGGCAACACCCCGCTGGTTCGCGTGACGCGCTTC
GATACCGGCCCCTGCACCCTGTTCCTCAAGCTCGAATCGCAGAACCCCGGCGGCTCCATCAAGGATCGCATC
GGTGTCGCCATGATCGAGGCCGCCGAGCGTGACGGCCGCCTGCGGCCCGGTGGCACCATCGTCGAGGCCACC
GCCGGCAACACCGGTCTCGGCCTGGCCCTGGTCGGCCGCGCCAAGGGCTACCGGGTGGTGCTGGTGGTGCCG
GACAAGATGTCCACCGAGAAGGTCCTGCACCTGCGCGCCATGGGCGCCGAGGTGCACATCACCCGCTCGGAC
GTCGGCAAGGGCCATCCGGAGTACTACCAGGACGTTGCCGCGCGCCTGGCGCAGGACATTCCCGGCGCATTC
TTCGCCGACCAGTTCAACAACCCGGCCAACCCGCTGGCCCACGAGTGCGGCACCGGCCCGGAGCTCTGGGCG
CAGACCGGCCACGATCTCGACGCCATCGTCGTCGGCGTCGGCTCCTCCGGTACCCTGACCGGCCTTACCCGG
TTCTTCCAGAAGGTCCAGCCGGAGCTGGAGATGGTGCTCGCCGACCCCGAGGGCTCGATCATGGCCGAATAC
TCCCGCTCCGGCACCCTGGGTACGCCGGGGTCCTGGGCGGTGGAGGGCATCGGCGAGGATTTCGTACCGGCC
ATCGCCGACCTCTCCAGCGTGCGCCATGCCTATTCCATCAGCGACGAGGAAAGCTTCGCCATGGCCCGCGAG
CTGTTGCGCGTCGAGGGCATTCCCGGCGGCTCCTCCACCGGCACCCTGCTGGCCGCGGCGCTGCGCTTCTGC
CGCGAGCAGAAGGAGCCGAAGCGGGTGGTCAGCTTCGTCTGCGACACCGGCACCCGCTACCTGTCGAAGATC
TACAACGACCAGTGGATGACCGACCAGGGCCTGCTGCAACGCAAGCACTACGGCGACCTGCGCGACATCATC
GCGCGGCGCTTCGAGGAGGGCCGGGTGATCAGCGTCGGTCCGGACGACACCCTGCTCACCGCCTTCCAGCGC
ATGCGCCTGGCCGACGTTTCGCAATTGCCGGTGCTGGACGATGGAAAACTGGTCGGTGTGATCGACGAGTCG
GATATCCTGCTCGGCGTCCACGCCGACGCGCCACGCTTCCGCGATGCGGTAAGCAGCGCGATGAACGCCGCG
CCGGAGACCCTCGCGCCCGGCGCCAGCCTGGCCCAGTTGCAGGCGGTCCTGGACCGCGGCCTGGTGGCGATC
GTTGCCGATGCCAGCGGCTTCCACGGCCTGATCACCCGTTTCGACCTGTTGAACCATTTGCGGAGAAAGCTC
ACATGA

Translation:

MTSDSRPAVLDLIGNTPLVRVTRFDTGPCTLFLKLESQNPGGSIKDRIGVAMIEAAERDGRLRPGGTIVEAT
AGNTGLGLALVGRAKGYRVVLVVPDKMSTEKVLHLRAMGAEVHITRSDVGKGHPEYYQDVAARLAQDIPGAF
FADQFNNPANPLAHECGTGPELWAQTGHDLDAIVVGVGSSGTLTGLTRFFQKVQPELEMVLADPEGSIMAEY
SRSGTLGTPGSWAVEGIGEDFVPAIADLSSVRHAYSISDEESFAMARELLRVEGIPGGSSTGTLLAAALRFC
REQKEPKRVVSFVCDTGTRYLSKIYNDQWMTDQGLLQRKHYGDLRDIIARRFEEGRVISVGPDDTLLTAFQR
MRLADVSQLPVLDDGKLVGVIDESDILLGVHADAPRFRDAVSSAMNAAPETLAPGASLAQLQAVLDRGLVAI
VADASGFHGLITRFDLLNHLRRKLT*

AnnotationID:1070 GeneID:1061

AnnotatorUID: danlee

Modification Date/Time: 2004-02-05 19:07:32

Gene Name:

Confidence Code: 2

GeneProduct: cystathionine beta-synthase

Cell Localization: ()

Synonyms:

Cell Localization Confidence Code: 5

MolecularFunction:

Functional Category: (2) Amino acid biosynthesis and metabolism

Alternate Gene Product Name: serine sulfhydrase, beta-thionase, methylcysteine synthase

Functional Category Confidence Code: 5

COGs: COG0031, KOG1252, KOG1481

Secondary Functional Category(ies):

EC Number:

Status: ACTIVE

Pathway:

Homology:

Structural Features:

Genomic Context:

Comment:

ReferenceID:2125

Author/Investigator(s): GenNotator

Title:

PubMed:

MedLine:

Source:

Reference Type: BLASTP

Data:

URL:

ReferenceID:17046

Author/Investigator(s):

Title:

PubMed:

MedLine:

Source:

NCBI - Conserved Domain Search (BLASTP).

Reference Type: Blast (text/plain)

Data: PA0399_CDS.cgi

URL:

ReferenceID:19267

Author/Investigator(s): GenNotator

Title: CDD Search

PubMed:

MedLine:

Source:

Reference Type: RPSBLAST

Data:

URL:

Homologs By Global Alignment

Gene ID:1061

Identity:

10%

20%

30%

40%

50%

60%

70%

80%

90%

100%

HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score

1916 PA0399_tr translation of PA0399 457 99.56 99.78 0 2323.0

65777 gb|AAG03788.1|AE004477_5 (AE004477) cystathionine beta-synthase [Pseudomonas aeruginosa PAO1] 457 99.56 99.78 0 2323.0

65779 gb|AAK53485.1|AF204145_26 (AF204145) cystathionine beta-lyase [Xanthomonas campestris pv. campestris] 458 62.88 76.85 3 1469.0

65781 gb|AAM38446.1| (AE012010) cystathionine beta-synthase [Xanthomonas axonopodis pv. citri str. 306] 458 62.66 75.98 3 1455.0

65780 gb|AAM39913.1| (AE012157) cystathionine beta-synthase [Xanthomonas campestris pv. campestris str. ATCC 33913] 458 62.44 76.85 3 1461.0

GC ORFID: `44063`	How Found: `BLASTX`
GC_TrimmedSeqID: `69`	Blast Result ID
Subject Sequence Name: `t_PA0399`	Glimmer Score:
Start: `6256717`	Stop: `6258090`
Length: `1374`
Start Codon: `ATG`	Truncated Start:
Stop Codon: `TGA`	Truncated Stop:
Homolog: `t_PA0399 translation of PA0399`	Homolog Bit Score `899.0`
Other Homologs: `t_PA0399 (ORF: GLIMMER)`
GC ORF Sequence
ATGACTTCCGACTCACGCCCCGCCGTGCTCGACCTGATCGGCAACACCCCGCTGGTTCGCGTGACGCGCTTC GATACCGGCCCCTGCACCCTGTTCCTCAAGCTCGAATCGCAGAACCCCGGCGGCTCCATCAAGGATCGCATC GGTGTCGCCATGATCGAGGCCGCCGAGCGTGACGGCCGCCTGCGGCCCGGTGGCACCATCGTCGAGGCCACC GCCGGCAACACCGGTCTCGGCCTGGCCCTGGTCGGCCGCGCCAAGGGCTACCGGGTGGTGCTGGTGGTGCCG GACAAGATGTCCACCGAGAAGGTCCTGCACCTGCGCGCCATGGGCGCCGAGGTGCACATCACCCGCTCGGAC GTCGGCAAGGGCCATCCGGAGTACTACCAGGACGTTGCCGCGCGCCTGGCGCAGGACATTCCCGGCGCATTC TTCGCCGACCAGTTCAACAACCCGGCCAACCCGCTGGCCCACGAGTGCGGCACCGGCCCGGAGCTCTGGGCG CAGACCGGCCACGATCTCGACGCCATCGTCGTCGGCGTCGGCTCCTCCGGTACCCTGACCGGCCTTACCCGG TTCTTCCAGAAGGTCCAGCCGGAGCTGGAGATGGTGCTCGCCGACCCCGAGGGCTCGATCATGGCCGAATAC TCCCGCTCCGGCACCCTGGGTACGCCGGGGTCCTGGGCGGTGGAGGGCATCGGCGAGGATTTCGTACCGGCC ATCGCCGACCTCTCCAGCGTGCGCCATGCCTATTCCATCAGCGACGAGGAAAGCTTCGCCATGGCCCGCGAG CTGTTGCGCGTCGAGGGCATTCCCGGCGGCTCCTCCACCGGCACCCTGCTGGCCGCGGCGCTGCGCTTCTGC CGCGAGCAGAAGGAGCCGAAGCGGGTGGTCAGCTTCGTCTGCGACACCGGCACCCGCTACCTGTCGAAGATC TACAACGACCAGTGGATGACCGACCAGGGCCTGCTGCAACGCAAGCACTACGGCGACCTGCGCGACATCATC GCGCGGCGCTTCGAGGAGGGCCGGGTGATCAGCGTCGGTCCGGACGACACCCTGCTCACCGCCTTCCAGCGC ATGCGCCTGGCCGACGTTTCGCAATTGCCGGTGCTGGACGATGGAAAACTGGTCGGTGTGATCGACGAGTCG GATATCCTGCTCGGCGTCCACGCCGACGCGCCACGCTTCCGCGATGCGGTAAGCAGCGCGATGAACGCCGCG CCGGAGACCCTCGCGCCCGGCGCCAGCCTGGCCCAGTTGCAGGCGGTCCTGGACCGCGGCCTGGTGGCGATC GTTGCCGATGCCAGCGGCTTCCACGGCCTGATCACCCGTTTCGACCTGTTGAACCATTTGCGGAGAAAGCTC ACATGA