ViewGene
Locus Name:
GeneID:
Location:

GeneID:1060
TrivialName: PA14_02990
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_02990
PAO1 Ortholog Locus:PA0241
Sequence Length:1326
Protein Length:441
Start: 263030
Stop: 261705
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG03630.1|AE004462_3 (AE004462) probable MFS transporter [Pseudomonas aeruginosa PAO1]
Identities = 441/441 (100%), Positives = 441/441 (100%)
Sequence:
ATGATCCACTCTTCCAGCTCTCGACTGCTCGCCGCCGACGCCCCGCGGGAATCCCGCGGCGGCAGGATCCGC
AACGCCTTCGCCGTCGGCCGGACGCGCTGGGGCATGCTCGCCCTGGTGTTCTTCGCCACCACCCTGAACTAC
ATCGATCGCGCCGCCCTCGGCGTGATGCAGCCGATCCTGGCCGAGAAGATGAGCTGGACGGCAATGGACTAC
GCCAACATCAACTTCTGGTTCCAGGTCGGCTACGCCATCGGCTTCATCCTCCAGGGCCGCTTCATCGACAAG
GTCGGGGTCAAGCGCGCGTTCTTCCTCGCCGTGCTGCTCTGGAGCCTGGCCACCGGCGCCCACGGCCTGGCG
ACCTCGGCGGCGGGCTTCATGGTCTGCCGCTTCATCCTCGGCCTGACCGAGGCGGCCAACTACCCGGCCTGC
GTGAAGACCACCCGCCTGTGGTTCCCCGCCGGGGAACGGGCGGTGGCCACCGGCATCTTCAACGCCGGCACC
AATGTCGGCGCGATGGTCACCCCGGCCCTGTTGCCGCTGATCCTCGGCGTCTGGGGCTGGCAGGCGGCGTTC
CTCTGCATGTCGGCGCTGGGCCTGGTCTGGCTGGTGTTCTGGTGGCGCAACTACTACAACCCCGAGGAGCAT
CCGCGGGTGAAGCAGAGCGAGCTGGAATACATCCAGCAGCAGGAGGAGCCGCCCGCCACCCGCGTGCCCTTC
TCGCAGATTCTCCGCCGCCGCGGCACCTGGGCCTTCGCCCTGGCCTACTCGATCACCGCGCCGGTGTTCTGG
TTCTACCTCTACTGGCTGCCGCCGTTCCTCAACCAGCAGTACGGCCTGGGCATCAGCGTGACGCAGATGGGC
ATCCCGCTGATCCTGATCTGGTTGACCGCCGACTTCGGCAGCGTCGGCGGCGGCATCCTTTCGTCCTGGCTG
ATCGGCCGCGGCATGCCGGCGATCCGCGCGCGCCTGCTGTCGATGCTGCTGTTCGCCTGCACCATCGTCGGC
GTGGTGTTCGCCGCCAACGCCAGCGGCCTGTGGATCGCCGTGCTGGCCATCGCCCTGGCGGTCGGCGCACAC
CAGGCGTGGACGGCGAACATCTGGAGCCTGGTGATGGACTACACGCCCAAGCACCTGATGAGCACGGTGTTC
GGCTTCGGCGGCATGTGCGCGGCGCTGGGCGGGATGTTCATGACCCAGATCGTCGGCGGCGTACTGACCGCG
ACGAACAACAACTACGCGGTGCTTTTCACCATGATCCCGGCGATGTACTTCATCGCCCTGACCTGGCTGTAC
TTCATGGCCCCGCGCCGGATCGAAGCCTGA
Translation:
MIHSSSSRLLAADAPRESRGGRIRNAFAVGRTRWGMLALVFFATTLNYIDRAALGVMQPILAEKMSWTAMDY
ANINFWFQVGYAIGFILQGRFIDKVGVKRAFFLAVLLWSLATGAHGLATSAAGFMVCRFILGLTEAANYPAC
VKTTRLWFPAGERAVATGIFNAGTNVGAMVTPALLPLILGVWGWQAAFLCMSALGLVWLVFWWRNYYNPEEH
PRVKQSELEYIQQQEEPPATRVPFSQILRRRGTWAFALAYSITAPVFWFYLYWLPPFLNQQYGLGISVTQMG
IPLILIWLTADFGSVGGGILSSWLIGRGMPAIRARLLSMLLFACTIVGVVFAANASGLWIAVLAIALAVGAH
QAWTANIWSLVMDYTPKHLMSTVFGFGGMCAALGGMFMTQIVGGVLTATNNNYAVLFTMIPAMYFIALTWLY
FMAPRRIEA*
AnnotationID:1069GeneID:1060
AnnotatorUID: diggins
Modification Date/Time: 2005-03-23 18:06:51
Gene Name:
Confidence Code:3
GeneProduct:putative MFS transporter
Cell Localization:()
Synonyms:PA0241
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(27) Transport of small molecules
Alternate Gene Product Name:putative permease
Functional Category Confidence Code:5
COGs:COG2271
Secondary Functional Category(ies):membrane proteins
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAN68212.1|AE016454_7 (AE016783) major facilitator family transporter [Pseudomonas putida
           KT2440]
          Length = 480

 Score =  768 bits (1982), Expect = 0.0
 Identities = 361/431 (83%), Positives = 402/431 (93%), Gaps = 3/431 (0%)

>gb|AAO55857.1| (AE016864) transporter, putative [Pseudomonas syringae pv. tomato
           str. DC3000]
          Length = 439

 Score =  760 bits (1962), Expect = 0.0
 Identities = 363/424 (85%), Positives = 392/424 (92%)

>emb|CAD18547.1| (AL646084) PUTATIVE TRANSPORTER TRANSMEMBRANE PROTEIN [Ralstonia
           solanacearum]
          Length = 441

 Score =  679 bits (1753), Expect = 0.0
 Identities = 323/423 (76%), Positives = 369/423 (87%)








 
Structural Features:
COG2271, UhpC, Sugar phosphate permease 
[Carbohydrate transport and metabolism]
CD-Length = 448 residues,  91.5% aligned
Score =  109 bits (274), Expect = 6e-25
Identities = 91/418 (21%), Positives = 154/418 (36%), Gaps = 22/418 (5%)






   
Genomic Context:






   
Comment:


















    ReferenceID:2123




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:19265




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:33595




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:1060_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:1060
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
1915
                           PA0241_tr
                           translation of PA0241
                           441
                           99.99
                           99.99
                           0
                           2324.0
     

     
     
65770
                           gb|AAG03630.1|AE004462_3
                           (AE004462) probable MFS transporter [Pseudomonas aeruginosa PAO1]
                           441
                           99.99
                           99.99
                           0
                           2324.0
     

     
     
65772
                           gb|AAO55857.1|
                           (AE016864) transporter, putative [Pseudomonas syringae pv. tomato str. DC3000]
                           444
                           81.98
                           89.63
                           8
                           1958.0
     

     
     
65771
                           gb|AAN68212.1|AE016454_7
                           (AE016783) major facilitator family transporter [Pseudomonas putida KT2440]
                           484
                           75.20
                           83.88
                           47
                           1985.0
     

     
     
65773
                           emb|CAD18547.1|
                           (AL646084) PUTATIVE TRANSPORTER TRANSMEMBRANE PROTEIN [Ralstonia solanacearum]
                           443
                           73.58
                           84.19
                           4
                           1750.0
     

     






      

          
GC ORFID: 44062How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA0241Glimmer Score: 

          
Start: 6064371Stop: 6063046

          
Length: 1326


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA0241 translation of PA0241Homolog Bit Score 899.0

          
Other Homologs:  psyr_15may02_Scaffold1_revised_gene341 (ORF: BLASTX 758.0), t_PA0241 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGATCCACTCTTCCAGCTCTCGACTGCTCGCCGCCGACGCCCCGCGGGAATCCCGCGGCGGCAGGATCCGC 
AACGCCTTCGCCGTCGGCCGGACGCGCTGGGGCATGCTCGCCCTGGTGTTCTTCGCCACCACCCTGAACTAC 
ATCGATCGCGCCGCCCTCGGCGTGATGCAGCCGATCCTGGCCGAGAAGATGAGCTGGACGGCAATGGACTAC 
GCCAACATCAACTTCTGGTTCCAGGTCGGCTACGCCATCGGCTTCATCCTCCAGGGCCGCTTCATCGACAAG 
GTCGGGGTCAAGCGCGCGTTCTTCCTCGCCGTGCTGCTCTGGAGCCTGGCCACCGGCGCCCACGGCCTGGCG 
ACCTCGGCGGCGGGCTTCATGGTCTGCCGCTTCATCCTCGGCCTGACCGAGGCGGCCAACTACCCGGCCTGC 
GTGAAGACCACCCGCCTGTGGTTCCCCGCCGGGGAACGGGCGGTGGCCACCGGCATCTTCAACGCCGGCACC 
AATGTCGGCGCGATGGTCACCCCGGCCCTGTTGCCGCTGATCCTCGGCGTCTGGGGCTGGCAGGCGGCGTTC 
CTCTGCATGTCGGCGCTGGGCCTGGTCTGGCTGGTGTTCTGGTGGCGCAACTACTACAACCCCGAGGAGCAT 
CCGCGGGTGAAGCAGAGCGAGCTGGAATACATCCAGCAGCAGGAGGAGCCGCCCGCCACCCGCGTGCCCTTC 
TCGCAGATTCTCCGCCGCCGCGGCACCTGGGCCTTCGCCCTGGCCTACTCGATCACCGCGCCGGTGTTCTGG 
TTCTACCTCTACTGGCTGCCGCCGTTCCTCAACCAGCAGTACGGCCTGGGCATCAGCGTGACGCAGATGGGC 
ATCCCGCTGATCCTGATCTGGTTGACCGCCGACTTCGGCAGCGTCGGCGGCGGCATCCTTTCGTCCTGGCTG 
ATCGGCCGCGGCATGCCGGCGATCCGCGCGCGCCTGCTGTCGATGCTGCTGTTCGCCTGCACCATCGTCGGC 
GTGGTGTTCGCCGCCAACGCCAGCGGCCTGTGGATCGCCGTGCTGGCCATCGCCCTGGCGGTCGGCGCACAC 
CAGGCGTGGACGGCGAACATCTGGAGCCTGGTGATGGACTACACGCCCAAGCACCTGATGAGCACGGTGTTC 
GGCTTCGGCGGCATGTGCGCGGCGCTGGGCGGGATGTTCATGACCCAGATCGTCGGCGGCGTACTGACCGCG 
ACGAACAACAACTACGCGGTGCTTTTCACCATGATCCCGGCGATGTACTTCATCGCCCTGACCTGGCTGTAC 
TTCATGGCCCCGCGCCGGATCGAAGCCTGA