ViewGene
Locus Name:
GeneID:
Location:

GeneID:106
TrivialName: PA14_50730
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_50730
PAO1 Ortholog Locus:PA1054
Sequence Length:2802
Protein Length:933
Start: 4507868
Stop: 4505067
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04443.1|AE004537_8 (AE004537) probable NADH dehydrogenase [Pseudomonas aeruginosa PAO1]
Identities = 932/933 (99%), Positives = 933/933 (100%)
Sequence:
ATGATTCTGGCGCTGATCATCGCGCTGCCGTTCATGGGGGCGTTGTTGCCCCTGCTCGCCGAGCGTGGCGGC
CGCACCTTGTGCGCGGCGTCCGCCGGCGTGGCGCCGCTGATCGGCCTGGTCCTGTTGCTCGGGCAGCGCGGC
ACGGTGTTCGCCGGGCAGACCCTGACCGCCAGCTATTCCTGGCTGCCGGAAATCGGCATCAACCTCAGCCTG
CGCCTGGACGGCCTCGGTTTCCTCTTCGCCCTGCTGATCCTCGGCATCGGCCTACTGGTGATCCTCTACGCC
CGCTACTACCTCTCCGAACAGGAGCCGATGGGGCGTTTCTTCGCTTTCCTGCTGCTGTTCATGGGCTCCATG
CTCGGCGTGGTGCTCGCGGAAAATCTCTTGCTGATGATGCTCTTCTGGGAGCTGACCAGCCTGTCCTCGTTC
CTGCTCATCGGCTTCTGGGGCAGCCGTTCCGACGCCCGCAAGGGTGCGAGGATGGCCCTGACCGTTACCGGA
GGGGGCGGCCTGGCGCTGCTGGCCGGGGTGCTGCTGCTCGGCCACATCGCCGGCAGCTTCGAACTCACCGAG
GTCCTCGCGGCTGGCGAGCTGATCCGCGCCCACGCCCTGTATCCGCTGGTACTGATCCTGATCCTGCTCGGC
GTGTTCACCAAGTCGGCGCAGTTCCCCTTCCATTTCTGGCTGCCCCACGCGATGGCGGCGCCGACCCCGGTT
TCCGCGTACCTGCACTCGGCGACCATGGTCAAGGCCGGCGTGTTCCTGCTGGCCCGGCTGTATCCGGCGCTG
GCCGGCACCGAGTGGTTCTTCTACCTGGTCAGCCTGAGCGGCCTGGTAACGCTGTTGCTGGGCGCCGGCATG
GCACTGTTCCAGCATGACCTGAAGGGGCTGCTGGCCTACTCGACGATCAGCCACCTGGGCCTGATCACCCTG
CTGTTCGGCCTCGACTCCCCGCTGTCGAACGTCGCCGCGGTGTTCCACATCATCAACCACGCGACCTTCAAG
GCCTCGCTGTTCATGGCCGCCGGGATCATCGACCACGAGACCGGCAGTCGCGACATGCGCCTGATCAACGGG
ATGTGGAAGTACCTGCCGCATACCGCGGTGCTGGCCATCGTCGCCTCCCTGGCGATGGCCGGGGTGCCGCTG
CTGAACGGCTTCCTCAGCAAGGAGATGTTCTTCGGCGAAACCCTCAGCCAGAACCTGCTGGGCAGCTTCAAC
TGGCTGGTGCCGGCGGTGGCGACCCTGGCCGGGGTGTTCTCGGTGGCCTATTCGCTGCGTTTCATCCACGAC
GTGTTCTTCAACGGCGAGCCGGCCCGGTTGCCGAAGTTCCCGCCCCACGAGCCGCCGCGCTACATGAAGGTA
CCGGTGGAGATCCTGGTGTTCCTCTGCCTGTTGGTCGGCATGCTGCCGGCCTACACCGTGGCGCCGCTGCTG
GCCGCCGCCGCCAGTGCCAGCCTTGGCGGGCAACTGCCGGAATACAGCCTGGCGATCTGGCACGGTTTCAAC
CTGCCATTGCTGATGAGCGTGGTGGCGCTGGTTGGCGGTGTGCTGGTCTATGTCCTGCGCAAGCCGCTGTTC
AACTGGTATGCCGGATTGCCGGAGGTGGACGCCAAGCTGGTCTTCGAGCAGCAGGTGCAACGTGTGGTGGCC
CTGGCCGCGCGCCTGACCGCCTGGCTGGAGAACGGGTCGCTGCAGCGCTACCTGGCCTGGCTGCTGGGCGCG
GCGCTGGTCGTGGTGGCGGTCGAGCTGGCGCCGCTGGCGAGGCTGACCGGCTCGCGCGGGCTGACCCCGCTG
GACGGTATCACCGCCCTGGGCATGCTGGTGCTGGCCTTCAGCGGCCTGGCCACGGCGCTGTTCCATCGCATG
CGCCTGGTCGCGCTATTGATCCTCAGCGTCGCCGGCCTGCTGGTGGCCCTGGCCTTCGCTCGCTTCTCGGCC
CCGGACCTGGCGCTGACCCAACTGTCGGTGGAAGTGGTGACCATGGTCCTGCTGATGCTGGCGCTGTATTTC
CTGCCCTCGCGCACTCCGGCGGAGTCCTCCAGCCTGCGCGGCTTGCGCGACGTGGCGCTGGCCGGCGGGGTC
GGCATGCTGGTGGCGCTGCTGGCCTACGCGGTGCTGACCCGGCCCTACGAGAGCATCGCCGGATTCTTCGTC
GAGAACAGCGTCTCTGGGGGCGGCGGCTACAACGTGGTCAACGTCATCCTGGTGGACTTCCGTGGTTTCGAT
ACCCTCGGCGAGATCAGCGTGCTGGCGATCGCCGGCGTCGGCATCTACGCGATGCTCGCCGGTTTCGCCCTG
CACAAGCCGACCTGCGACCCGCAGGGTCGCAACTGGGCCCACGCCAAGCACCCGCTGATCCTGGAAACCCTG
TCGCGGGTGCTGCTGCCGCTGGCGTTGCTGATCTCGGTGTTCATCTTCCTGCGCGGCCACAACCTGCCGGGC
GGAGGTTTCATCGCCGGCCTGGTGACTGCCATCGCCCTGGTGCTGCAGTACATCGCCAGCGGCTCGCAGTGG
GTCGAGCAGCGCCTGCCGCTGAACTATGCGGCCATGGCTGGCGCCGGAGTGCTGATCGCCGGGCTCACCGGG
CTCGGCAGCTGGCTGTTCGGCTATCCGTTCCTGACTTCTGCGTTCGGCCACTTCGAGTTGCCGCTGATCGGC
GAGATCGAGCTGGCCACGGCGATGCTGTTCGACCTCGGCGTGTACCTCACCGTGGTCGGTGCCGCGCTGCTG
ATCCTGTCCTACCTCGGCAAGCTCAGCCTGATGCCTGAACCCGTCGCACAAGAGGAGGCGCTCTGA
Translation:
MILALIIALPFMGALLPLLAERGGRTLCAASAGVAPLIGLVLLLGQRGTVFAGQTLTASYSWLPEIGINLSL
RLDGLGFLFALLILGIGLLVILYARYYLSEQEPMGRFFAFLLLFMGSMLGVVLAENLLLMMLFWELTSLSSF
LLIGFWGSRSDARKGARMALTVTGGGGLALLAGVLLLGHIAGSFELTEVLAAGELIRAHALYPLVLILILLG
VFTKSAQFPFHFWLPHAMAAPTPVSAYLHSATMVKAGVFLLARLYPALAGTEWFFYLVSLSGLVTLLLGAGM
ALFQHDLKGLLAYSTISHLGLITLLFGLDSPLSNVAAVFHIINHATFKASLFMAAGIIDHETGSRDMRLING
MWKYLPHTAVLAIVASLAMAGVPLLNGFLSKEMFFGETLSQNLLGSFNWLVPAVATLAGVFSVAYSLRFIHD
VFFNGEPARLPKFPPHEPPRYMKVPVEILVFLCLLVGMLPAYTVAPLLAAAASASLGGQLPEYSLAIWHGFN
LPLLMSVVALVGGVLVYVLRKPLFNWYAGLPEVDAKLVFEQQVQRVVALAARLTAWLENGSLQRYLAWLLGA
ALVVVAVELAPLARLTGSRGLTPLDGITALGMLVLAFSGLATALFHRMRLVALLILSVAGLLVALAFARFSA
PDLALTQLSVEVVTMVLLMLALYFLPSRTPAESSSLRGLRDVALAGGVGMLVALLAYAVLTRPYESIAGFFV
ENSVSGGGGYNVVNVILVDFRGFDTLGEISVLAIAGVGIYAMLAGFALHKPTCDPQGRNWAHAKHPLILETL
SRVLLPLALLISVFIFLRGHNLPGGGFIAGLVTAIALVLQYIASGSQWVEQRLPLNYAAMAGAGVLIAGLTG
LGSWLFGYPFLTSAFGHFELPLIGEIELATAMLFDLGVYLTVVGAALLILSYLGKLSLMPEPVAQEEAL*
AnnotationID:116GeneID:106
AnnotatorUID: danlee
Modification Date/Time: 2004-05-19 15:03:32
Gene Name:
Confidence Code:3
GeneProduct:probable NADH dehydrogenase
Cell Localization:()
Synonyms:PA1054, phaA
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(20) Putative enzymes
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG1009, COG0651, COG1008
Secondary Functional Category(ies):Membrane proteins
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
COG1009, NuoL, NADH:ubiquinone oxidoreductase subunit 5. Score: 409, 7e-115
COG0651, HyfB, Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, 
MnhD subunit. Score: 205, 2e-53
COG1008, NuoM, NADH:ubiquinone oxidoreductase subunit 4. Score:






   
Genomic Context:
This is in a cluster of genes homologous to the phaABCDEFG locus of Rhizobium 
meliloti (but the PAO1/PA14 locus lacks a phaB homolog). 






   
Comment:


















    ReferenceID:215




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:17357




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:32208




  
Author/Investigator(s):
        Putnoky P, Kereszt A, Nakamura T, Endre G, Grosskopf E, Kiss P, Kondorosi A.





  
Title:
        The pha gene cluster of Rhizobium meliloti involved in pH adaptation and symbiosis encodes a novel type of K+ efflux system.




  
PubMed:
        98343795


MedLine:
        




    
Source:
Mol Microbiol. 1998 Jun;28(6):1091-101.






    
Reference Type:Journal 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:106
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
204
                           PA1054_tr
                           translation of PA1054
                           933
                           99.89
                           99.99
                           0
                           4662.0
     

     
     
15239
                           gb|AAG04443.1|AE004537_8
                           (AE004537) probable NADH dehydrogenase [Pseudomonas aeruginosa PAO1]
                           933
                           99.89
                           99.99
                           0
                           4662.0
     

     
     
15240
                           gb|AAM35353.1|
                           (AE011673) NADH dehydrogenase subunit 5 [Xanthomonas axonopodis pv. citri str. 306]
                           955
                           53.19
                           69.42
                           35
                           2473.0
     

     
     
15241
                           gb|AAM39764.1|
                           (AE012142) NADH dehydrogenase subunit 5 [Xanthomonas campestris pv. campestris str. ATCC 33913]
                           977
                           52.30
                           67.75
                           79
                           2441.0
     

     
     
15243
                           gb|AAN67843.1|AE016415_8
                           (AE016782) multicomponent potassium-proton antiporter, subunit A/B, putative [Pseudomonas putida KT2440]
                           989
                           52.17
                           68.14
                           74
                           2396.0
     

     






      

          
GC ORFID: 43108How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA1054Glimmer Score: 

          
Start: 446040Stop: 448841

          
Length: 2802


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA1054 translation of PA1054Homolog Bit Score 1800.0

          
Other Homologs:  psyr_15may02_Scaffold1_revised_gene1293 (ORF: BLASTX 915.0), t_PA1054 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGATTCTGGCGCTGATCATCGCGCTGCCGTTCATGGGGGCGTTGTTGCCCCTGCTCGCCGAGCGTGGCGGC 
CGCACCTTGTGCGCGGCGTCCGCCGGCGTGGCGCCGCTGATCGGCCTGGTCCTGTTGCTCGGGCAGCGCGGC 
ACGGTGTTCGCCGGGCAGACCCTGACCGCCAGCTATTCCTGGCTGCCGGAAATCGGCATCAACCTCAGCCTG 
CGCCTGGACGGCCTCGGTTTCCTCTTCGCCCTGCTGATCCTCGGCATCGGCCTACTGGTGATCCTCTACGCC 
CGCTACTACCTCTCCGAACAGGAGCCGATGGGGCGTTTCTTCGCTTTCCTGCTGCTGTTCATGGGCTCCATG 
CTCGGCGTGGTGCTCGCGGAAAATCTCTTGCTGATGATGCTCTTCTGGGAGCTGACCAGCCTGTCCTCGTTC 
CTGCTCATCGGCTTCTGGGGCAGCCGTTCCGACGCCCGCAAGGGTGCGAGGATGGCCCTGACCGTTACCGGA 
GGGGGCGGCCTGGCGCTGCTGGCCGGGGTGCTGCTGCTCGGCCACATCGCCGGCAGCTTCGAACTCACCGAG 
GTCCTCGCGGCTGGCGAGCTGATCCGCGCCCACGCCCTGTATCCGCTGGTACTGATCCTGATCCTGCTCGGC 
GTGTTCACCAAGTCGGCGCAGTTCCCCTTCCATTTCTGGCTGCCCCACGCGATGGCGGCGCCGACCCCGGTT 
TCCGCGTACCTGCACTCGGCGACCATGGTCAAGGCCGGCGTGTTCCTGCTGGCCCGGCTGTATCCGGCGCTG 
GCCGGCACCGAGTGGTTCTTCTACCTGGTCAGCCTGAGCGGCCTGGTAACGCTGTTGCTGGGCGCCGGCATG 
GCACTGTTCCAGCATGACCTGAAGGGGCTGCTGGCCTACTCGACGATCAGCCACCTGGGCCTGATCACCCTG 
CTGTTCGGCCTCGACTCCCCGCTGTCGAACGTCGCCGCGGTGTTCCACATCATCAACCACGCGACCTTCAAG 
GCCTCGCTGTTCATGGCCGCCGGGATCATCGACCACGAGACCGGCAGTCGCGACATGCGCCTGATCAACGGG 
ATGTGGAAGTACCTGCCGCATACCGCGGTGCTGGCCATCGTCGCCTCCCTGGCGATGGCCGGGGTGCCGCTG 
CTGAACGGCTTCCTCAGCAAGGAGATGTTCTTCGGCGAAACCCTCAGCCAGAACCTGCTGGGCAGCTTCAAC 
TGGCTGGTGCCGGCGGTGGCGACCCTGGCCGGGGTGTTCTCGGTGGCCTATTCGCTGCGTTTCATCCACGAC 
GTGTTCTTCAACGGCGAGCCGGCCCGGTTGCCGAAGTTCCCGCCCCACGAGCCGCCGCGCTACATGAAGGTA 
CCGGTGGAGATCCTGGTGTTCCTCTGCCTGTTGGTCGGCATGCTGCCGGCCTACACCGTGGCGCCGCTGCTG 
GCCGCCGCCGCCAGTGCCAGCCTTGGCGGGCAACTGCCGGAATACAGCCTGGCGATCTGGCACGGTTTCAAC 
CTGCCATTGCTGATGAGCGTGGTGGCGCTGGTTGGCGGTGTGCTGGTCTATGTCCTGCGCAAGCCGCTGTTC 
AACTGGTATGCCGGATTGCCGGAGGTGGACGCCAAGCTGGTCTTCGAGCAGCAGGTGCAACGTGTGGTGGCC 
CTGGCCGCGCGCCTGACCGCCTGGCTGGAGAACGGGTCGCTGCAGCGCTACCTGGCCTGGCTGCTGGGCGCG 
GCGCTGGTCGTGGTGGCGGTCGAGCTGGCGCCGCTGGCGAGGCTGACCGGCTCGCGCGGGCTGACCCCGCTG 
GACGGTATCACCGCCCTGGGCATGCTGGTGCTGGCCTTCAGCGGCCTGGCCACGGCGCTGTTCCATCGCATG 
CGCCTGGTCGCGCTATTGATCCTCAGCGTCGCCGGCCTGCTGGTGGCCCTGGCCTTCGCTCGCTTCTCGGCC 
CCGGACCTGGCGCTGACCCAACTGTCGGTGGAAGTGGTGACCATGGTCCTGCTGATGCTGGCGCTGTATTTC 
CTGCCCTCGCGCACTCCGGCGGAGTCCTCCAGCCTGCGCGGCTTGCGCGACGTGGCGCTGGCCGGCGGGGTC 
GGCATGCTGGTGGCGCTGCTGGCCTACGCGGTGCTGACCCGGCCCTACGAGAGCATCGCCGGATTCTTCGTC 
GAGAACAGCGTCTCTGGGGGCGGCGGCTACAACGTGGTCAACGTCATCCTGGTGGACTTCCGTGGTTTCGAT 
ACCCTCGGCGAGATCAGCGTGCTGGCGATCGCCGGCGTCGGCATCTACGCGATGCTCGCCGGTTTCGCCCTG 
CACAAGCCGACCTGCGACCCGCAGGGTCGCAACTGGGCCCACGCCAAGCACCCGCTGATCCTGGAAACCCTG 
TCGCGGGTGCTGCTGCCGCTGGCGTTGCTGATCTCGGTGTTCATCTTCCTGCGCGGCCACAACCTGCCGGGC 
GGAGGTTTCATCGCCGGCCTGGTGACTGCCATCGCCCTGGTGCTGCAGTACATCGCCAGCGGCTCGCAGTGG 
GTCGAGCAGCGCCTGCCGCTGAACTATGCGGCCATGGCTGGCGCCGGAGTGCTGATCGCCGGGCTCACCGGG 
CTCGGCAGCTGGCTGTTCGGCTATCCGTTCCTGACTTCTGCGTTCGGCCACTTCGAGTTGCCGCTGATCGGC 
GAGATCGAGCTGGCCACGGCGATGCTGTTCGACCTCGGCGTGTACCTCACCGTGGTCGGTGCCGCGCTGCTG 
ATCCTGTCCTACCTCGGCAAGCTCAGCCTGATGCCTGAACCCGTCGCACAAGAGGAGGCGCTCTGA