ViewGene
Locus Name:
GeneID:
Location:

GeneID:1059
TrivialName: PA14_33750
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_33750
PAO1 Ortholog Locus:PA2391
Sequence Length:1425
Protein Length:474
Start: 2998490
Stop: 2997066
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG05779.1|AE004665_6 (AE004665) probable outer membrane protein precursor [Pseudomonas aeruginosa PAO1]
Identities = 470/474 (99%), Positives = 471/474 (99%)
Sequence:
ATGTCCATGAAGAATCTTTCCCTGATTTCCGCCTGCCTGCTGCTCGGCGCCTGCGGCAGCACGCCGGCGCCC
CTCGACAGCGGCCTGGCCGCGCCCCCTCAGTGGCGCTACCTGGCGGCCGGGCGCAGCGATGCCAGCGACATC
CGCCAGTGGTGGAAGGCCTTCGGCGCGCCGGAACTGGACAGCCTGCTGCAACGCGCCCTGCTGAACAGCCAG
GACCTCGGCGCGGCGGTGGCCCGCGTGCGCCAGGCCCAGGCCTCGGCGGTGATCGCCGGCGCGCCGCTGCTG
CCGGAGCTGAATGCGACGCTCGGCGCCAGCCGGCAGAAACTCCTGCGCGGCTCGGGCTATAGCGGTACCGAC
GCGACCTCCGACAACGATGCCGTCGACTCCTTCTCCGCCGGCCTCAGCGCCAGCTACGAAGTGGACTTCTGG
GGCGGTCGCCGAGCTGCCTACCGCAGTGCCCTGGAAAGCCTCAAGGCCAGCGAGTACGACCGCGCCACGGTA
GAGCTGACCCTGCTCTCCGGCGTCGCCAACAGCTACCTGCAGGTATTGGCGCTGCGCGAACAGCAGCGCATC
GCCAGGCTCAACCTGGACAACGCCGAGCACGTCCTGCGCCTGGTGGAGACCCGCCATGCCGCGGGCTCGGCC
ACCGCCCTGGAGGTCGCCCAGCAGAGCAGCCTGGTCGCCAGCCAGCGCAAGCAGCTGCCGCTACTCGAGCAG
CAGGCCCATGAGGCGCTGATTACCCTGGCCACCCTGATCGGCGAGCCGGTGCAGGCGCTACAGGTGGCCGAG
CGACCTTTCGACAGCCTGCGCTGGCCGGAGACCGGAACGGGCCTGCCGAGCGAACTGCTCAGCCGCCGTCCC
GATATCGCCAACGCCGAAGCGCAACTGGCCGCGGCCCAGGCCGACGTGCAGGTGGCGCGCGCGGCGCTGTTC
CCCAAGCTGACCCTGAGCGCCTCGCTGTCGTCCGGCGCCAACCGCGCCGCCGACACTTTCCGCAACCCCTAT
TACAACCTGGGCGCCAACCTGCTCGCCCCGATCTTCAACCACGGCCGCCTGCGCGCTGAGCGCGACCGCAGC
CTGGCGCGCCAGGAAGAACTGCTGGAAACCTACCGCAAGGCGATCCTCACCGCCTTTGCCGACACCGAACGC
TCGCTGAACAGCATCGACGGCCTCGACCGCCAGCTGCACTGGCAGCAGCAGGAGCTGGAGCAGGCGCAGCGC
GCCTTCGATCTCTCCGACAGCCGCTACCAGGCCGGCGCGGAAACCCTGCTGACGGTCCTCGAAACGCAACGC
ACGCTGTACGCGGCGCAGGATGCCGCCGTGCAACTGCGACTGGCCCGCCTGCAGGCCTCGGTCGGCCTGTAC
AAGGCCCTCGGCGGCGGCTGGCAGAGCGACCGCCAGGGTCTCGCGCGGAAAGACTGA
Translation:
MSMKNLSLISACLLLGACGSTPAPLDSGLAAPPQWRYLAAGRSDASDIRQWWKAFGAPELDSLLQRALLNSQ
DLGAAVARVRQAQASAVIAGAPLLPELNATLGASRQKLLRGSGYSGTDATSDNDAVDSFSAGLSASYEVDFW
GGRRAAYRSALESLKASEYDRATVELTLLSGVANSYLQVLALREQQRIARLNLDNAEHVLRLVETRHAAGSA
TALEVAQQSSLVASQRKQLPLLEQQAHEALITLATLIGEPVQALQVAERPFDSLRWPETGTGLPSELLSRRP
DIANAEAQLAAAQADVQVARAALFPKLTLSASLSSGANRAADTFRNPYYNLGANLLAPIFNHGRLRAERDRS
LARQEELLETYRKAILTAFADTERSLNSIDGLDRQLHWQQQELEQAQRAFDLSDSRYQAGAETLLTVLETQR
TLYAAQDAAVQLRLARLQASVGLYKALGGGWQSDRQGLARKD*
AnnotationID:1068GeneID:1059
AnnotatorUID: diggins
Modification Date/Time: 2005-03-06 08:08:07
Gene Name:
Confidence Code:3
GeneProduct:putative outer membrane protein precursor
Cell Localization:()
Synonyms:opmQ
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(27) Transport of small molecules
Alternate Gene Product Name:putative ABC export system, outer membrane protein
Functional Category Confidence Code:5
COGs:COG1538
Secondary Functional Category(ies):membrane proteins
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAO55675.1| (AE016863) outer membrane efflux protein [Pseudomonas syringae pv.
           tomato str. DC3000]
          Length = 467

 Score =  523 bits (1348), Expect = e-148
 Identities = 275/460 (59%), Positives = 356/460 (77%), Gaps = 5/460 (1%)

>gb|AAN69792.1|AE016615_8 (AE016789) ABC export system, outer membrane protein [Pseudomonas
           putida KT2440]
          Length = 470

 Score =  514 bits (1325), Expect = e-145
 Identities = 276/463 (59%), Positives = 339/463 (73%), Gaps = 1/463 (0%)

>emb|CAD84991.1| (BX321859) Outer membrane efflux protein [Nitrosomonas europaea
           ATCC 19718]
          Length = 460

 Score =  386 bits (991), Expect = e-106
 Identities = 228/468 (48%), Positives = 297/468 (63%), Gaps = 22/468 (4%)








 
Structural Features:
COG1538, TolC, Outer membrane protein 
[Cell envelope biogenesis, outer membrane / Intracellular trafficking and secretion]
CD-Length = 457 residues,  94.5% aligned
Score =  208 bits (530), Expect = 1e-54
Identities = 168/437 (38%), Positives = 233/437 (53%), Gaps = 8/437 (1%)








   
Genomic Context:






   
Comment:


















    ReferenceID:2121




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:19263




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:32942




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:1059_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:1059
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
1914
                           PA2391_tr
                           translation of PA2391
                           474
                           99.15
                           99.36
                           0
                           2322.0
     

     
     
65765
                           gb|AAG05779.1|AE004665_6
                           (AE004665) probable outer membrane protein precursor [Pseudomonas aeruginosa PAO1]
                           474
                           99.15
                           99.36
                           0
                           2322.0
     

     
     
65767
                           gb|AAN69792.1|AE016615_8
                           (AE016789) ABC export system, outer membrane protein [Pseudomonas putida KT2440]
                           478
                           58.15
                           71.75
                           12
                           1319.0
     

     
     
65766
                           gb|AAO55675.1|
                           (AE016863) outer membrane efflux protein [Pseudomonas syringae pv. tomato str. DC3000]
                           482
                           58.09
                           75.10
                           23
                           1353.0
     

     
     
65768
                           emb|CAD84991.1|
                           (BX321859) Outer membrane efflux protein [Nitrosomonas europaea ATCC 19718]
                           481
                           48.23
                           62.78
                           28
                           1006.0
     

     






      

          
GC ORFID: 44061How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA2391Glimmer Score: 

          
Start: 1955426Stop: 1956850

          
Length: 1425


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA2391 translation of PA2391Homolog Bit Score 899.0

          
Other Homologs:  psyr_15may02_Scaffold1_revised_gene463 (ORF: BLASTX 530.0), t_PA2391 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGTCCATGAAGAATCTTTCCCTGATTTCCGCCTGCCTGCTGCTCGGCGCCTGCGGCAGCACGCCGGCGCCC 
CTCGACAGCGGCCTGGCCGCGCCCCCTCAGTGGCGCTACCTGGCGGCCGGGCGCAGCGATGCCAGCGACATC 
CGCCAGTGGTGGAAGGCCTTCGGCGCGCCGGAACTGGACAGCCTGCTGCAACGCGCCCTGCTGAACAGCCAG 
GACCTCGGCGCGGCGGTGGCCCGCGTGCGCCAGGCCCAGGCCTCGGCGGTGATCGCCGGCGCGCCGCTGCTG 
CCGGAGCTGAATGCGACGCTCGGCGCCAGCCGGCAGAAACTCCTGCGCGGCTCGGGCTATAGCGGTACCGAC 
GCGACCTCCGACAACGATGCCGTCGACTCCTTCTCCGCCGGCCTCAGCGCCAGCTACGAAGTGGACTTCTGG 
GGCGGTCGCCGAGCTGCCTACCGCAGTGCCCTGGAAAGCCTCAAGGCCAGCGAGTACGACCGCGCCACGGTA 
GAGCTGACCCTGCTCTCCGGCGTCGCCAACAGCTACCTGCAGGTATTGGCGCTGCGCGAACAGCAGCGCATC 
GCCAGGCTCAACCTGGACAACGCCGAGCACGTCCTGCGCCTGGTGGAGACCCGCCATGCCGCGGGCTCGGCC 
ACCGCCCTGGAGGTCGCCCAGCAGAGCAGCCTGGTCGCCAGCCAGCGCAAGCAGCTGCCGCTACTCGAGCAG 
CAGGCCCATGAGGCGCTGATTACCCTGGCCACCCTGATCGGCGAGCCGGTGCAGGCGCTACAGGTGGCCGAG 
CGACCTTTCGACAGCCTGCGCTGGCCGGAGACCGGAACGGGCCTGCCGAGCGAACTGCTCAGCCGCCGTCCC 
GATATCGCCAACGCCGAAGCGCAACTGGCCGCGGCCCAGGCCGACGTGCAGGTGGCGCGCGCGGCGCTGTTC 
CCCAAGCTGACCCTGAGCGCCTCGCTGTCGTCCGGCGCCAACCGCGCCGCCGACACTTTCCGCAACCCCTAT 
TACAACCTGGGCGCCAACCTGCTCGCCCCGATCTTCAACCACGGCCGCCTGCGCGCTGAGCGCGACCGCAGC 
CTGGCGCGCCAGGAAGAACTGCTGGAAACCTACCGCAAGGCGATCCTCACCGCCTTTGCCGACACCGAACGC 
TCGCTGAACAGCATCGACGGCCTCGACCGCCAGCTGCACTGGCAGCAGCAGGAGCTGGAGCAGGCGCAGCGC 
GCCTTCGATCTCTCCGACAGCCGCTACCAGGCCGGCGCGGAAACCCTGCTGACGGTCCTCGAAACGCAACGC 
ACGCTGTACGCGGCGCAGGATGCCGCCGTGCAACTGCGACTGGCCCGCCTGCAGGCCTCGGTCGGCCTGTAC 
AAGGCCCTCGGCGGCGGCTGGCAGAGCGACCGCCAGGGTCTCGCGCGGAAAGACTGA