ViewGene
Locus Name:
GeneID:
Location:

GeneID:1057
TrivialName: PA14_67440
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_67440
PAO1 Ortholog Locus:PA5106
Sequence Length:1362
Protein Length:453
Start: 6021710
Stop: 6023071
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG08491.1|AE004923_7 (AE004923) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 450/453 (99%), Positives = 451/453 (99%)
Sequence:
ATGTCCGCAATTTTCGCTGAACGTGCGTTGCTGCCGGAAGGCTGGGCGCGAAATGTCCGTTTCGAGATTTCC
GCGGACGGAGTTCTCGCCGAGATTCGTCCCGACGCCAACGCCGACGGCGCCGAACGCCTCGGCGGCGCCGTG
CTGCCGGGGATGCCCAACCTCCATTCGCACGCGTTCCAGCGCGCCATGGCCGGGCTCGCCGAAGTCGCCGGC
AATCCCAACGACAGTTTCTGGACCTGGCGCGAGCTGATGTACCGGATGGTCGCTCGGCTGTCGCCGGAACAG
ATCGAGGTCATCGCCCGCCAGCTCTATATCGAGATGCTCAAGGCCGGCTACACGGCGGTGGCGGAATTCCAC
TACGTCCATCACGACCTCGACGGCCGCTCCTACGCCGACCCCGCCGAACTTTCCCTGCGCATCTCCCGCGCC
GCCAGCGCCGCCGGCATCGGCCTGACCCTGCTTCCCGTGCTTTACAGCCACGCAGGCTTCGGCGGCCAGCCG
GCCAGCGAGGGCCAGCGGCGCTTCATCAATGGCAGCGAGGCCTATCTGGAACTGCTCCAGCGCCTGCGCGCG
CCGCTGGACGCGGCAGGCCACTCCCTGGGCCTGTGCTTCCACTCCCTGCGCGCGGTGACTCCGCAGCAGATC
GCCACGGTCCTCGCCGCCGGCCACGACGACCTGCCGGTCCACATCCATATCGCCGAACAGCAGAAGGAAGTC
GACGACTGCCTGGCCTGGAGCGGACGCCGGCCGTTGCAATGGCTGTACGAGAACGTCGCGGTCGACCAGCGC
TGGTGCCTGGTCCATGCGACCCACGCCGACCCCGCCGAGGTGGCGGCGATGGCGCGTAGCGGCGCGGTGGCC
GGCCTGTGCCTGAGCACCGAGGCCAACCTCGGCGACGGCATCTTCCCGGCGACGGACTTCCTCGCCCAGGGC
GGGCGCCTGGGCATCGGCTCGGACAGCCACGTCTCGCTCAGCGTGGTCGAGGAACTCCGCTGGCTGGAATAC
GGCCAGCGCCTGCGCGACCGGAAACGCAACCGGCTGTACCGCGACGACCAGCCGATGATCGGCCGCACGCTC
TACGACGCTGCGCTGGCTGGCGGCGCTCAGGCCCTTGGGCAGCCGATCGGTAGCCTCGCCGTGGGCCGCCGC
GCCGACCTGCTGGTGCTCGACGGCAACGACCCCTACCTGGCCAGCGCCGAGGGCGACGCCCTGCTCAACCGC
TGGCTGTTCGCCGGCGGCGACCGCCAGGTGCGCGACGTGATGGTGGCCGGCAGATGGGTGGTGCGCGACGGC
CGGCATGCCGGGGAAGAACGCAGCGCCCGGGCATTCGTCCAGGTGCTGGGGGAACTGCTCGACTGA
Translation:
MSAIFAERALLPEGWARNVRFEISADGVLAEIRPDANADGAERLGGAVLPGMPNLHSHAFQRAMAGLAEVAG
NPNDSFWTWRELMYRMVARLSPEQIEVIARQLYIEMLKAGYTAVAEFHYVHHDLDGRSYADPAELSLRISRA
ASAAGIGLTLLPVLYSHAGFGGQPASEGQRRFINGSEAYLELLQRLRAPLDAAGHSLGLCFHSLRAVTPQQI
ATVLAAGHDDLPVHIHIAEQQKEVDDCLAWSGRRPLQWLYENVAVDQRWCLVHATHADPAEVAAMARSGAVA
GLCLSTEANLGDGIFPATDFLAQGGRLGIGSDSHVSLSVVEELRWLEYGQRLRDRKRNRLYRDDQPMIGRTL
YDAALAGGAQALGQPIGSLAVGRRADLLVLDGNDPYLASAEGDALLNRWLFAGGDRQVRDVMVAGRWVVRDG
RHAGEERSARAFVQVLGELLD*
AnnotationID:1066GeneID:1057
AnnotatorUID: diggins
Modification Date/Time: 2005-03-15 07:07:21
Gene Name:
Confidence Code:3
GeneProduct:putative chlorohydrolase
Cell Localization:()
Synonyms:PA5106
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(20) Putative enzymes
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:cd01313,COG0402
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAN70601.1|AE016703_1 (AE016793) chlorohydrolase family protein [Pseudomonas putida
           KT2440]
          Length = 454

 Score =  717 bits (1852), Expect = 0.0
 Identities = 357/454 (78%), Positives = 396/454 (87%), Gaps = 3/454 (0%)

>gb|AAO58597.1| (AE016874) Atz/Trz family protein [Pseudomonas syringae pv. tomato
           str. DC3000]
          Length = 454

 Score =  715 bits (1845), Expect = 0.0
 Identities = 346/453 (76%), Positives = 393/453 (86%), Gaps = 1/453 (0%)

>emb|CAC90788.1| (AJ414150) putative chlorohydrolase [Yersinia pestis CO92]
          Length = 456

 Score =  549 bits (1414), Expect = e-155
 Identities = 272/449 (60%), Positives = 333/449 (74%), Gaps = 1/449 (0%)








 
Structural Features:
cd01313, Met_dep_hydrolase_E, Metallo-dependent hydrolases
CD-Length = 418 residues, 100.0% aligned
Score =  581 bits (1499), Expect = 6e-167

COG0402, SsnA, Cytosine deaminase and related metal-dependent hydrolases 
[Nucleotide transport and metabolism]
CD-Length = 421 residues,  99.5% aligned
Score =  245 bits (625), Expect = 1e-65
Identities = 131/449 (29%), Positives = 188/449 (41%), Gaps = 37/449 (8%)






   
Genomic Context:






   
Comment:


















    ReferenceID:2117




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:19259




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:34957




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:1057_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:1057
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
1912
                           PA5106_tr
                           translation of PA5106
                           453
                           99.33
                           99.55
                           0
                           2327.0
     

     
     
65741
                           gb|AAG08491.1|AE004923_7
                           (AE004923) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
                           453
                           99.33
                           99.55
                           0
                           2327.0
     

     
     
65742
                           gb|AAN70601.1|AE016703_1
                           (AE016793) chlorohydrolase family protein [Pseudomonas putida KT2440]
                           455
                           78.46
                           87.03
                           3
                           1855.0
     

     
     
65744
                           gb|AAK15637.1|
                           (AF326719) SdeB-like protein [Pseudomonas syringae]
                           455
                           77.36
                           86.59
                           3
                           1845.0
     

     
     
65743
                           gb|AAO58597.1|
                           (AE016874) Atz/Trz family protein [Pseudomonas syringae pv. tomato str. DC3000]
                           454
                           76.21
                           86.56
                           1
                           1846.0
     

     






      

          
GC ORFID: 44059How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA5106Glimmer Score: 

          
Start: 5285395Stop: 5286756

          
Length: 1362


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA5106 translation of PA5106Homolog Bit Score 900.0

          
Other Homologs:  psyr_15may02_Scaffold2_revised_gene3267 (ORF: BLASTX 708.0), t_PA5106 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGTCCGCAATTTTCGCTGAACGTGCGTTGCTGCCGGAAGGCTGGGCGCGAAATGTCCGTTTCGAGATTTCC 
GCGGACGGAGTTCTCGCCGAGATTCGTCCCGACGCCAACGCCGACGGCGCCGAACGCCTCGGCGGCGCCGTG 
CTGCCGGGGATGCCCAACCTCCATTCGCACGCGTTCCAGCGCGCCATGGCCGGGCTCGCCGAAGTCGCCGGC 
AATCCCAACGACAGTTTCTGGACCTGGCGCGAGCTGATGTACCGGATGGTCGCTCGGCTGTCGCCGGAACAG 
ATCGAGGTCATCGCCCGCCAGCTCTATATCGAGATGCTCAAGGCCGGCTACACGGCGGTGGCGGAATTCCAC 
TACGTCCATCACGACCTCGACGGCCGCTCCTACGCCGACCCCGCCGAACTTTCCCTGCGCATCTCCCGCGCC 
GCCAGCGCCGCCGGCATCGGCCTGACCCTGCTTCCCGTGCTTTACAGCCACGCAGGCTTCGGCGGCCAGCCG 
GCCAGCGAGGGCCAGCGGCGCTTCATCAATGGCAGCGAGGCCTATCTGGAACTGCTCCAGCGCCTGCGCGCG 
CCGCTGGACGCGGCAGGCCACTCCCTGGGCCTGTGCTTCCACTCCCTGCGCGCGGTGACTCCGCAGCAGATC 
GCCACGGTCCTCGCCGCCGGCCACGACGACCTGCCGGTCCACATCCATATCGCCGAACAGCAGAAGGAAGTC 
GACGACTGCCTGGCCTGGAGCGGACGCCGGCCGTTGCAATGGCTGTACGAGAACGTCGCGGTCGACCAGCGC 
TGGTGCCTGGTCCATGCGACCCACGCCGACCCCGCCGAGGTGGCGGCGATGGCGCGTAGCGGCGCGGTGGCC 
GGCCTGTGCCTGAGCACCGAGGCCAACCTCGGCGACGGCATCTTCCCGGCGACGGACTTCCTCGCCCAGGGC 
GGGCGCCTGGGCATCGGCTCGGACAGCCACGTCTCGCTCAGCGTGGTCGAGGAACTCCGCTGGCTGGAATAC 
GGCCAGCGCCTGCGCGACCGGAAACGCAACCGGCTGTACCGCGACGACCAGCCGATGATCGGCCGCACGCTC 
TACGACGCTGCGCTGGCTGGCGGCGCTCAGGCCCTTGGGCAGCCGATCGGTAGCCTCGCCGTGGGCCGCCGC 
GCCGACCTGCTGGTGCTCGACGGCAACGACCCCTACCTGGCCAGCGCCGAGGGCGACGCCCTGCTCAACCGC 
TGGCTGTTCGCCGGCGGCGACCGCCAGGTGCGCGACGTGATGGTGGCCGGCAGATGGGTGGTGCGCGACGGC 
CGGCATGCCGGGGAAGAACGCAGCGCCCGGGCATTCGTCCAGGTGCTGGGGGAACTGCTCGACTGA