ViewGene
Locus Name:
GeneID:
Location:

GeneID:1056
TrivialName: PA14_17280
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_17280
PAO1 Ortholog Locus:PA3638
Sequence Length:1329
Protein Length:442
Start: 1484023
Stop: 1485351
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG07026.1|AE004783_11 (AE004783) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 440/442 (99%), Positives = 440/442 (99%)
Sequence:
ATGCCGGCAGTGCCGCTCGAATCCCGTCTGTTACAGGCCCTGGCGCCCTGGCGCGAAGCGGGGGGCTGGTGC
GTGGCGTTTTCCGGCGGGCTGGATTCGACGGTGTTGCTGCATCTGCTCGCCCAGTTGGCCCGGAGCGAAGCC
TTGCCGGCGCTGTCGGCGCTGCATGTCCACCATGGCTTGCAGGCTGCGGCGGACGGTTGGCCGGCGCACTGC
CAGGCGGTCTGCCGGTCGCTGGGTATCCCGCTGCGGGTCGAGCGGGTACAGGTCGCCGTTGGCGGCAGCATC
GAGCAGGCGGCGCGCGACGCCCGCTATCGCGCATTCCAGGCGAACCTGGGCGAGGGACAGGTGCTGCTCACC
GCGCAGCACCTCGACGACCAGGCCGAGACCTTGCTGTTCCGCCTGTTGCGTGGAGCGGGCCTGCGCGGCCTG
GCGGCGATGCCGGCGAGCCGGCCGCTGGGCGGCGGCCGCCTGTGCCGACCCTTGCTCGGGGTTTCCCGCGCC
GAACTGGAAGCCTATGCGCAGACGCACCGGCTGGACTGGGTGGAGGATCCTTCCAACCAGGATCCGCGCTTC
TCGCGCAACTACCTGCGCCGGGAGATCATGCCGCGTCTCGCCTCCCACTGGCCGCAGGCCGTCGCCGGCATG
GCGCGCTGCGCGGCGCATCTGCGCGAGGCCGAAGACCTGCTGGCTGAACTGGCCGCCATCGACCTCCGGGCC
TGCCGCCAACCCTCGGAACTGGATTGGCCGGACTGGCTGGATCTGCCCCGGATCGCCCTGGAGCCTCTGCGC
CACCTCAGCGCTGCGCGCCAGCGCAACCTGCTGCGGGCCTGGCTGGGACAGCTGACGCGGTTGCCGGACAGC
GACCACTGGGCCGGCTGGGAGTCGTTGCGCGATGCCGGCGACGATGCCGACCCGATCTGGCGCCTGGAGAGC
GGCGAGCTGCGTCGCGGCGCGGGGCGGATCTGGTGGTTGCCGGCGGACTGGCGGGCGGCGGCGGGACCGTTC
GTCTGGGAGCGTCCCGCTCATCCCTTGCTTCTTCCCGGCAATGGTCGGCTGGCGTTGCTCGGCGAGGTTCCG
GCGGGGCCGTTGCGCGTCGACTACCGGCGGGGTGGGGAGGTGCTGGCCCTGGCCGGGCGCGGTCGCCGCGAC
CTCAAGCGATTGCTCAACGAAGCGGGCGTACCGAGCTTCCTGCGCGGTCGTTTGCCGCTGCTCTTCCGAGCC
GACGAACTGCTCGCGGTGGCCAACATTCCTGGCCTGGACAGTCCCCGCGAGGGGGGCTGGCGACTGTCCTGG
AGCCCGCCGACGAACGACCCGGGTTTGAGCTAG
Translation:
MPAVPLESRLLQALAPWREAGGWCVAFSGGLDSTVLLHLLAQLARSEALPALSALHVHHGLQAAADGWPAHC
QAVCRSLGIPLRVERVQVAVGGSIEQAARDARYRAFQANLGEGQVLLTAQHLDDQAETLLFRLLRGAGLRGL
AAMPASRPLGGGRLCRPLLGVSRAELEAYAQTHRLDWVEDPSNQDPRFSRNYLRREIMPRLASHWPQAVAGM
ARCAAHLREAEDLLAELAAIDLRACRQPSELDWPDWLDLPRIALEPLRHLSAARQRNLLRAWLGQLTRLPDS
DHWAGWESLRDAGDDADPIWRLESGELRRGAGRIWWLPADWRAAAGPFVWERPAHPLLLPGNGRLALLGEVP
AGPLRVDYRRGGEVLALAGRGRRDLKRLLNEAGVPSFLRGRLPLLFRADELLAVANIPGLDSPREGGWRLSW
SPPTNDPGLS*
AnnotationID:1065GeneID:1056
AnnotatorUID: diggins
Modification Date/Time: 2005-04-20 21:09:24
Gene Name:
Confidence Code:3
GeneProduct:putative cell cycle protein
Cell Localization:()
Synonyms:mesJ
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(6) Cell division
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:pfam01171,COG0037
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAO55071.1| (AE016861) cell cycle protein mesJ, putative [Pseudomonas syringae
           pv. tomato str. DC3000]
          Length = 455

 Score =  541 bits (1395), Expect = e-153
 Identities = 275/438 (62%), Positives = 313/438 (71%), Gaps = 4/438 (0%)

>gb|AAG54490.1|AE005194_11 (AE005194) cell cycle protein [Escherichia coli O157:H7 EDL933]
          Length = 431

 Score =  274 bits (700), Expect = 9e-73
 Identities = 169/401 (42%), Positives = 216/401 (53%), Gaps = 20/401 (4%)







 
Structural Features:
pfam01171, ATP_bind_3, PP-loop family.
CD-Length = 205 residues,  99.5% aligned
Score =  237 bits (606), Expect = 4e-63
Identities = 95/205 (46%), Positives = 124/205 (60%), Gaps = 6/205 (2%)

COG0037, MesJ, Predicted ATPase of the PP-loop superfamily 
implicated 
in cell cycle control 
[Cell division and chromosome partitioning]
CD-Length = 298 residues,  95.6% aligned
Score =  180 bits (456), Expect = 8e-46
Identities = 104/289 (35%), Positives = 135/289 (46%), Gaps = 14/289 (4%)






   
Genomic Context:






   
Comment:


















    ReferenceID:2115




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:19257




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:31905




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:1056_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:1056
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
1911
                           PA3638_tr
                           translation of PA3638
                           442
                           99.54
                           99.54
                           0
                           2327.0
     

     
     
65721
                           gb|AAG07026.1|AE004783_11
                           (AE004783) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
                           442
                           99.54
                           99.54
                           0
                           2327.0
     

     
     
65722
                           gb|AAO55071.1|
                           (AE016861) cell cycle protein mesJ, putative [Pseudomonas syringae pv. tomato str. DC3000]
                           464
                           60.12
                           68.31
                           31
                           1398.0
     

     
     
65723
                           gb|AAN67229.1|AE016350_2
                           (AE016779) cell cycle protein MesJ, putative [Pseudomonas putida KT2440]
                           446
                           58.52
                           66.59
                           23
                           1269.0
     

     
     
65734
                           gb|AAQ60855.1|
                           (AE016921) cell cycle protein [Chromobacterium violaceum ATCC 12472]
                           492
                           40.24
                           48.78
                           107
                           700.0
     

     






      

          
GC ORFID: 44058How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA3638Glimmer Score: 

          
Start: 3469914Stop: 3468586

          
Length: 1329


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TAGTruncated Stop: 

          
Homolog: t_PA3638 translation of PA3638Homolog Bit Score 900.0

          
Other Homologs:  psyr_15may02_Scaffold3_revised_gene4638 (ORF: BLASTX 239.0), t_PA3638 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGCCGGCAGTGCCGCTCGAATCCCGTCTGTTACAGGCCCTGGCGCCCTGGCGCGAAGCGGGGGGCTGGTGC 
GTGGCGTTTTCCGGCGGGCTGGATTCGACGGTGTTGCTGCATCTGCTCGCCCAGTTGGCCCGGAGCGAAGCC 
TTGCCGGCGCTGTCGGCGCTGCATGTCCACCATGGCTTGCAGGCTGCGGCGGACGGTTGGCCGGCGCACTGC 
CAGGCGGTCTGCCGGTCGCTGGGTATCCCGCTGCGGGTCGAGCGGGTACAGGTCGCCGTTGGCGGCAGCATC 
GAGCAGGCGGCGCGCGACGCCCGCTATCGCGCATTCCAGGCGAACCTGGGCGAGGGACAGGTGCTGCTCACC 
GCGCAGCACCTCGACGACCAGGCCGAGACCTTGCTGTTCCGCCTGTTGCGTGGAGCGGGCCTGCGCGGCCTG 
GCGGCGATGCCGGCGAGCCGGCCGCTGGGCGGCGGCCGCCTGTGCCGACCCTTGCTCGGGGTTTCCCGCGCC 
GAACTGGAAGCCTATGCGCAGACGCACCGGCTGGACTGGGTGGAGGATCCTTCCAACCAGGATCCGCGCTTC 
TCGCGCAACTACCTGCGCCGGGAGATCATGCCGCGTCTCGCCTCCCACTGGCCGCAGGCCGTCGCCGGCATG 
GCGCGCTGCGCGGCGCATCTGCGCGAGGCCGAAGACCTGCTGGCTGAACTGGCCGCCATCGACCTCCGGGCC 
TGCCGCCAACCCTCGGAACTGGATTGGCCGGACTGGCTGGATCTGCCCCGGATCGCCCTGGAGCCTCTGCGC 
CACCTCAGCGCTGCGCGCCAGCGCAACCTGCTGCGGGCCTGGCTGGGACAGCTGACGCGGTTGCCGGACAGC 
GACCACTGGGCCGGCTGGGAGTCGTTGCGCGATGCCGGCGACGATGCCGACCCGATCTGGCGCCTGGAGAGC 
GGCGAGCTGCGTCGCGGCGCGGGGCGGATCTGGTGGTTGCCGGCGGACTGGCGGGCGGCGGCGGGACCGTTC 
GTCTGGGAGCGTCCCGCTCATCCCTTGCTTCTTCCCGGCAATGGTCGGCTGGCGTTGCTCGGCGAGGTTCCG 
GCGGGGCCGTTGCGCGTCGACTACCGGCGGGGTGGGGAGGTGCTGGCCCTGGCCGGGCGCGGTCGCCGCGAC 
CTCAAGCGATTGCTCAACGAAGCGGGCGTACCGAGCTTCCTGCGCGGTCGTTTGCCGCTGCTCTTCCGAGCC 
GACGAACTGCTCGCGGTGGCCAACATTCCTGGCCTGGACAGTCCCCGCGAGGGGGGCTGGCGACTGTCCTGG 
AGCCCGCCGACGAACGACCCGGGTTTGAGCTAG