ViewGene
Locus Name:
GeneID:
Location:

GeneID:1054
TrivialName: PA14_31620
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_31620
PAO1 Ortholog Locus:PA2548
Sequence Length:1395
Protein Length:464
Start: 2748414
Stop: 2747020
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG05936.1|AE004682_8 (AE004682) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 461/464 (99%), Positives = 462/464 (99%)
Sequence:
ATGCCCGCGATGCCACACCGCCAGCGCGCCAGTGACAAAGACCTCTGGAGCCGTACCCTGAGCCTGGTTTTC
CTCGGATTCCTCTGTTACGCCTTCCCCTGGTCGGTATTCGCCGCCCCCTTGCCGATCCCCACGGACGACACG
CCGGCGCTGCGCATCCAGGGTTCCAACACCATCGGCGCGAAGCTCCTGCCGGCCCTGGTCGAGGGCCTGATG
GAAGAGGAAGGCCTGGAGGATATCCGCCGTACCCCCGGAGAACGGGAAAACGAACTCCATCTGCTCGGCAAG
AGCCGCGACGGCCGCCTGGTGAGGGTGGAGCTATCCGCCCACGGCTCGAGCACCGGCTTCGCCGCCCTCCTC
GAACGCCACGCCGAACTCGCCGCGGCCTCGCGTCCCGTCAAGGACAGCGAAGTTCGCGCCCTGGCCGGCTTC
GGCGACCTGCGCAGCCCATATGCCGAGCAGGTGATCGCCATCGACGGACTGGCGATCATCCTGCATCCGGAC
AACCCGCTGGCCTCGCTGGACACCGCGCAACTGGCGGCGGTGTTCGCCGGCGAGGTGCGTACCTGGGAAGAA
CTGGGCGGCAAGGGCGGCGCCATCCGCCTGTACGCTCGCGACGAGCAGTCCGGCACCTACGACACCTTCAAG
GAACTGGTGCTGGCCAGTCACGGCAAGAGCCTGGCCAGCGACGCCCGCCGCTTCGAATCCAACGATCGGCTG
GCGGCCGCGGTGAGCGCCGATCCGCACGCCATCGGCTTCGTCGGCATCGCGTCGGTGGGCCGGGCCCGCGCC
TTGGCCATCGCCGACGGCGAATCGCTGCCGATGGCGCCCCAGGAAAGCCTGATCGCCACCGAGGACTACCCG
CTGTCGCGCCGCCTGTTCCTCTACCTGAAGCCCGGCGAGAAGAACCCCTGGGCCCAGGCCCTGGTACGTTTC
GCCCAAGGCCCGCGCGGCCAGGCGATCGTCACCCGCAGCGGCTTCGTCGCGCAGAAGATCCAGGCGGTGCAG
ATCGCACCGCGCCCGCAGATGCCCGCCGAATACCGCAAGCTCGCGGAACAGGCGCGGCGCCTGACGGTGAAC
TTCCGCTTCCAGGAAGGCAGCGCGCTGCTCGACAACAAGGCACTGCTCGACGTACAGCGTTTGCTGGACTAC
CTGCGGCAAAATCGGAAGTTGCAGGAGCGCACCGTGCTGGTGGGCTTCGGCGATCCCAAGTCCGACGCCGAG
CGCTCGGTCCTGCTTTCGCGTCTGCGCGCCATGGCCGTGCGCCGCGAACTGGCCCGCGGCGGCGTGAGTTTC
CGCGAGATCGCCGGCTTCGGCGACGAGTTGCCGGTCGCCAGCAACGACCAGGAACTGGGCCGACAGAAGAAC
CGGCGGGTGGAAGTCTGGGTCTACTGA
Translation:
MPAMPHRQRASDKDLWSRTLSLVFLGFLCYAFPWSVFAAPLPIPTDDTPALRIQGSNTIGAKLLPALVEGLM
EEEGLEDIRRTPGERENELHLLGKSRDGRLVRVELSAHGSSTGFAALLERHAELAAASRPVKDSEVRALAGF
GDLRSPYAEQVIAIDGLAIILHPDNPLASLDTAQLAAVFAGEVRTWEELGGKGGAIRLYARDEQSGTYDTFK
ELVLASHGKSLASDARRFESNDRLAAAVSADPHAIGFVGIASVGRARALAIADGESLPMAPQESLIATEDYP
LSRRLFLYLKPGEKNPWAQALVRFAQGPRGQAIVTRSGFVAQKIQAVQIAPRPQMPAEYRKLAEQARRLTVN
FRFQEGSALLDNKALLDVQRLLDYLRQNRKLQERTVLVGFGDPKSDAERSVLLSRLRAMAVRRELARGGVSF
REIAGFGDELPVASNDQELGRQKNRRVEVWVY*
AnnotationID:1063GeneID:1054
AnnotatorUID: diggins
Modification Date/Time: 2005-03-06 21:09:57
Gene Name:
Confidence Code:3
GeneProduct:putative ABC-type periplasmic phosphate-binding protein
Cell Localization:()
Synonyms:PA2548
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(27) Transport of small molecules
Alternate Gene Product Name:putative outer membrane protein
Functional Category Confidence Code:5
COGs:COG0226,COG2885
Secondary Functional Category(ies):cell envelope biogenesis, outer membrane
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAO56247.1| (AE016865) OmpA family protein [Pseudomonas syringae pv. tomato
           str. DC3000]
          Length = 451

 Score =  516 bits (1329), Expect = e-145
 Identities = 262/431 (60%), Positives = 334/431 (77%), Gaps = 1/431 (0%)

>gb|AAN69412.1|AE016577_7 (AE016788) periplasmic phosphate-binding protein [Pseudomonas putida
           KT2440]
          Length = 435

 Score =  465 bits (1197), Expect = e-130
 Identities = 242/425 (56%), Positives = 311/425 (73%), Gaps = 2/425 (0%)








 
Structural Features:
COG0226, PstS, ABC-type phosphate transport system, periplasmic component 
[Inorganic ion transport and metabolism]
CD-Length = 318 residues,  98.1% aligned
Score =  167 bits (424), Expect = 2e-42
Identities = 99/347 (28%), Positives = 146/347 (42%), Gaps = 53/347 (15%)

COG2885, OmpA, Outer membrane protein and related peptidoglycan-associated (lipo)proteins 
[Cell envelope biogenesis, outer membrane]
CD-Length = 190 residues,  98.4% aligned
Score = 98.7 bits (245), Expect = 1e-21
Identities = 48/189 (25%), Positives = 68/189 (35%), Gaps = 4/189 (2%)






   
Genomic Context:






   
Comment:


















    ReferenceID:2111




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:19253




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:33122




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:1054_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:1054
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
1909
                           PA2548_tr
                           translation of PA2548
                           464
                           99.35
                           99.56
                           0
                           2327.0
     

     
     
65716
                           gb|AAG05936.1|AE004682_8
                           (AE004682) hypothetical protein PA2548 [Pseudomonas aeruginosa PAO1]
                           464
                           99.35
                           99.56
                           0
                           2327.0
     

     
     
65717
                           gb|AAO56247.1|
                           (AE016865) OmpA family protein [Pseudomonas syringae pv. tomato str. DC3000]
                           470
                           56.17
                           72.12
                           25
                           1322.0
     

     
     
65718
                           gb|AAN69412.1|AE016577_7
                           (AE016788) periplamic phosphate-binding protein [Pseudomonas putida KT2440]
                           464
                           52.80
                           67.67
                           29
                           1200.0
     

     






      

          
GC ORFID: 44056How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA2548Glimmer Score: 

          
Start: 2205512Stop: 2206906

          
Length: 1395


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA2548 translation of PA2548Homolog Bit Score 900.0

          
Other Homologs:  psyr_15may02_Scaffold9_revised_gene8064 (ORF: BLASTX 511.0), t_PA2548 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGCCCGCGATGCCACACCGCCAGCGCGCCAGTGACAAAGACCTCTGGAGCCGTACCCTGAGCCTGGTTTTC 
CTCGGATTCCTCTGTTACGCCTTCCCCTGGTCGGTATTCGCCGCCCCCTTGCCGATCCCCACGGACGACACG 
CCGGCGCTGCGCATCCAGGGTTCCAACACCATCGGCGCGAAGCTCCTGCCGGCCCTGGTCGAGGGCCTGATG 
GAAGAGGAAGGCCTGGAGGATATCCGCCGTACCCCCGGAGAACGGGAAAACGAACTCCATCTGCTCGGCAAG 
AGCCGCGACGGCCGCCTGGTGAGGGTGGAGCTATCCGCCCACGGCTCGAGCACCGGCTTCGCCGCCCTCCTC 
GAACGCCACGCCGAACTCGCCGCGGCCTCGCGTCCCGTCAAGGACAGCGAAGTTCGCGCCCTGGCCGGCTTC 
GGCGACCTGCGCAGCCCATATGCCGAGCAGGTGATCGCCATCGACGGACTGGCGATCATCCTGCATCCGGAC 
AACCCGCTGGCCTCGCTGGACACCGCGCAACTGGCGGCGGTGTTCGCCGGCGAGGTGCGTACCTGGGAAGAA 
CTGGGCGGCAAGGGCGGCGCCATCCGCCTGTACGCTCGCGACGAGCAGTCCGGCACCTACGACACCTTCAAG 
GAACTGGTGCTGGCCAGTCACGGCAAGAGCCTGGCCAGCGACGCCCGCCGCTTCGAATCCAACGATCGGCTG 
GCGGCCGCGGTGAGCGCCGATCCGCACGCCATCGGCTTCGTCGGCATCGCGTCGGTGGGCCGGGCCCGCGCC 
TTGGCCATCGCCGACGGCGAATCGCTGCCGATGGCGCCCCAGGAAAGCCTGATCGCCACCGAGGACTACCCG 
CTGTCGCGCCGCCTGTTCCTCTACCTGAAGCCCGGCGAGAAGAACCCCTGGGCCCAGGCCCTGGTACGTTTC 
GCCCAAGGCCCGCGCGGCCAGGCGATCGTCACCCGCAGCGGCTTCGTCGCGCAGAAGATCCAGGCGGTGCAG 
ATCGCACCGCGCCCGCAGATGCCCGCCGAATACCGCAAGCTCGCGGAACAGGCGCGGCGCCTGACGGTGAAC 
TTCCGCTTCCAGGAAGGCAGCGCGCTGCTCGACAACAAGGCACTGCTCGACGTACAGCGTTTGCTGGACTAC 
CTGCGGCAAAATCGGAAGTTGCAGGAGCGCACCGTGCTGGTGGGCTTCGGCGATCCCAAGTCCGACGCCGAG 
CGCTCGGTCCTGCTTTCGCGTCTGCGCGCCATGGCCGTGCGCCGCGAACTGGCCCGCGGCGGCGTGAGTTTC 
CGCGAGATCGCCGGCTTCGGCGACGAGTTGCCGGTCGCCAGCAACGACCAGGAACTGGGCCGACAGAAGAAC 
CGGCGGGTGGAAGTCTGGGTCTACTGA