ViewGene
Locus Name:
GeneID:
Location:

GeneID:1053
TrivialName: PA14_35270
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_35270
PAO1 Ortholog Locus:PA2266
Sequence Length:1320
Protein Length:439
Start: 3137251
Stop: 3135932
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG05654.1|AE004652_7 (AE004652) probable cytochrome c precursor [Pseudomonas aeruginosa PAO1]
Identities = 436/439 (99%), Positives = 438/439 (99%)
Sequence:
ATGAAACCGACAGCCTTCCTCGCCCTCTCCGCCCTCGCCTGCGGCATCGCCCAGGCCGCCGCAGCGCCGGAC
CCGGCCCTGGTCAGGCAGGGCGAATACCTGGCCCGCGCCGGCGATTGCGTGGCCTGCCACACCGCCAGGGAC
GGCAAGCCGTTCGCCGGGGGCCTGCCGATGGAAACGCCGATCGGCGCGGTGTACTCGACCAACATCACCCCG
GACCGCAAGACCGGCATCGGCGACTACAGCTTCGAGGACTTCGACCGTGCCGTGCGCCACGGCGTGGCCAGA
TCCGGCGACACCCTCTACCCGGCGATGCCCTACCCGTCCTACGCGCGAGTCAGCGAAGCGGACATGCGCGCC
CTCTACGCCTACTTCATGCATGGCGTGGAGCCGGTGGAGCAGCCCAACAAGGCCAGCGACATCCCCTGGCCG
CTGTCGATGCGCTGGCCGCTGGCATTCTGGCGCTGGACCTTCGCTCCCGAGGTGAAGGACTTCCAGGCCGCC
GCCGGGCAGGACCCGGTGCTGGCGCGCGGCGCCTACCTGGTCGAAGGCCTTGGCCACTGTGGCGCCTGCCAT
ACCCCGCGTGGGCTGGGCATGCAGGAGAAGGCCCTGGCGGCGAGCGATGGCGCGGCCTACCTGTCCGGCAGC
GCGCCGCTGGAGAACTGGATCGCCAAGAGCCTGCGCGGCGACCACCGGACCGGACTGGGCAGTTGGAGCGAA
GCCGACCTGGTCAGCTTCCTGCGCACCGGCCGCAGCGAGCGCAGCGCGGTGTTCGGCGGCATGTCCGACGTG
GTGGTGCACAGCATGCAGTACATGACCGACGCCGACCTCACCGCCATCGCCCGCTACCTCAAGTCGCTGCCG
CCGGCGGACCCCTCCGACCAGCCGCACGTCTACGACGAGAGCGTGGCCCAGGCACTGTTCCACGGCGACGAC
AGCAAGACCGGCGCGGCGCTCTACGTCGACAACTGCGGGGCCTGCCACCGCACCGACGGCAAGGGCTATGCG
CGGGTCTTCCCGGCCCTGGCCGGCAACCCGGTGGTGACCGGCAGCGACCCGACCTCCCTGGTGCACATCGTG
CTCAAGGGCGGCACCCTGCCGGCCACCCACCAGGCACCGTCGAGCTTCACCATGCCGCCGTTCGGCTGGCGG
ATGAACGACCAGGAGATCGCCGACGTGGTCAACTTCATCCGCACCAGTTGGGGCAACCAGGCGCCGAGCGTC
AGCGTCGACGAGGTCAAGCGCCTGCGCAAGGACACCGGCGCGGCGGCGGTGGGCGACATTCCGCCGCCGGGA
CCGGCCGCGGCGGATCGCGGCTGA
Translation:
MKPTAFLALSALACGIAQAAAAPDPALVRQGEYLARAGDCVACHTARDGKPFAGGLPMETPIGAVYSTNITP
DRKTGIGDYSFEDFDRAVRHGVARSGDTLYPAMPYPSYARVSEADMRALYAYFMHGVEPVEQPNKASDIPWP
LSMRWPLAFWRWTFAPEVKDFQAAAGQDPVLARGAYLVEGLGHCGACHTPRGLGMQEKALAASDGAAYLSGS
APLENWIAKSLRGDHRTGLGSWSEADLVSFLRTGRSERSAVFGGMSDVVVHSMQYMTDADLTAIARYLKSLP
PADPSDQPHVYDESVAQALFHGDDSKTGAALYVDNCGACHRTDGKGYARVFPALAGNPVVTGSDPTSLVHIV
LKGGTLPATHQAPSSFTMPPFGWRMNDQEIADVVNFIRTSWGNQAPSVSVDEVKRLRKDTGAAAVGDIPPPG
PAAADRG*
AnnotationID:1062GeneID:1053
AnnotatorUID: diggins
Modification Date/Time: 2005-03-04 07:07:09
Gene Name:
Confidence Code:3
GeneProduct:putative cytochrome c precursor
Cell Localization:()
Synonyms:PA2266
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(12) Energy metabolism
Alternate Gene Product Name:putative cytochrome-c subunit precursor of membrane-bound alcohol dehydrogenase
Functional Category Confidence Code:5
COGs:COG2010,pfam00034
Secondary Functional Category(ies):carbon compound metabolism
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAN68986.1|AE016530_9 (AE016786) gluconate dehydrogenase cytochrome c subunit, putative
           [Pseudomonas putida KT2440]
          Length = 417

 Score =  645 bits (1663), Expect = 0.0
 Identities = 308/414 (74%), Positives = 349/414 (84%), Gaps = 1/414 (0%)

>gb|AAC45884.1| (U97665) cytochrome c precursor [Pectobacterium cypripedii]
          Length = 441

 Score =  551 bits (1420), Expect = e-156
 Identities = 270/419 (64%), Positives = 322/419 (76%), Gaps = 7/419 (1%)

>dbj|BAA02993.1| (D13893) cytochrome c subunit of alcohol dehydrogenase [Acetobacter
           pasteurianus]
          Length = 472

 Score =  486 bits (1250), Expect = e-136
 Identities = 240/436 (55%), Positives = 305/436 (69%), Gaps = 12/436 (2%)






 
Structural Features:
COG2010, CccA, Cytochrome c, mono- and diheme variants 
[Energy production and conversion]
CD-Length = 150 residues,  96.7% aligned
Score = 59.6 bits (143), Expect = 7e-10
Identities = 46/171 (26%), Positives = 64/171 (37%), Gaps = 26/171 (15%)

pfam00034, Cytochrom_C, Cytochrome c.
CD-Length = 83 residues, 100.0% aligned
Score = 45.9 bits (108), Expect = 9e-06
Identities = 28/92 (30%), Positives = 41/92 (44%), Gaps = 10/92 (10%)






   
Genomic Context:






   
Comment:


















    ReferenceID:2109




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:19251




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:32514




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:1053_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:1053
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
1907
                           PA2266_tr
                           translation of PA2266
                           439
                           99.31
                           99.77
                           0
                           2325.0
     

     
     
65693
                           gb|AAG05654.1|AE004652_7
                           (AE004652) probable cytochrome c precursor [Pseudomonas aeruginosa PAO1]
                           439
                           99.31
                           99.77
                           0
                           2325.0
     

     
     
65694
                           gb|AAN68986.1|AE016530_9
                           (AE016786) gluconate dehydrogenase cytochrome c subunit, putative [Pseudomonas putida KT2440]
                           441
                           70.29
                           79.59
                           26
                           1665.0
     

     
     
65695
                           gb|AAC45884.1|
                           (U97665) cytochrome c precursor [Pectobacterium cypripedii]
                           458
                           60.69
                           72.27
                           36
                           1422.0
     

     
     
65697
                           dbj|BAA00529.1|
                           (D00635) cytochrome c [Acetobacter polyoxogenes]
                           473
                           53.06
                           65.11
                           39
                           1287.0
     

     






      

          
GC ORFID: 44055How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA2266Glimmer Score: 

          
Start: 1816665Stop: 1817984

          
Length: 1320


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA2266 translation of PA2266Homolog Bit Score 900.0

          
Other Homologs:  t_PA2266 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAAACCGACAGCCTTCCTCGCCCTCTCCGCCCTCGCCTGCGGCATCGCCCAGGCCGCCGCAGCGCCGGAC 
CCGGCCCTGGTCAGGCAGGGCGAATACCTGGCCCGCGCCGGCGATTGCGTGGCCTGCCACACCGCCAGGGAC 
GGCAAGCCGTTCGCCGGGGGCCTGCCGATGGAAACGCCGATCGGCGCGGTGTACTCGACCAACATCACCCCG 
GACCGCAAGACCGGCATCGGCGACTACAGCTTCGAGGACTTCGACCGTGCCGTGCGCCACGGCGTGGCCAGA 
TCCGGCGACACCCTCTACCCGGCGATGCCCTACCCGTCCTACGCGCGAGTCAGCGAAGCGGACATGCGCGCC 
CTCTACGCCTACTTCATGCATGGCGTGGAGCCGGTGGAGCAGCCCAACAAGGCCAGCGACATCCCCTGGCCG 
CTGTCGATGCGCTGGCCGCTGGCATTCTGGCGCTGGACCTTCGCTCCCGAGGTGAAGGACTTCCAGGCCGCC 
GCCGGGCAGGACCCGGTGCTGGCGCGCGGCGCCTACCTGGTCGAAGGCCTTGGCCACTGTGGCGCCTGCCAT 
ACCCCGCGTGGGCTGGGCATGCAGGAGAAGGCCCTGGCGGCGAGCGATGGCGCGGCCTACCTGTCCGGCAGC 
GCGCCGCTGGAGAACTGGATCGCCAAGAGCCTGCGCGGCGACCACCGGACCGGACTGGGCAGTTGGAGCGAA 
GCCGACCTGGTCAGCTTCCTGCGCACCGGCCGCAGCGAGCGCAGCGCGGTGTTCGGCGGCATGTCCGACGTG 
GTGGTGCACAGCATGCAGTACATGACCGACGCCGACCTCACCGCCATCGCCCGCTACCTCAAGTCGCTGCCG 
CCGGCGGACCCCTCCGACCAGCCGCACGTCTACGACGAGAGCGTGGCCCAGGCACTGTTCCACGGCGACGAC 
AGCAAGACCGGCGCGGCGCTCTACGTCGACAACTGCGGGGCCTGCCACCGCACCGACGGCAAGGGCTATGCG 
CGGGTCTTCCCGGCCCTGGCCGGCAACCCGGTGGTGACCGGCAGCGACCCGACCTCCCTGGTGCACATCGTG 
CTCAAGGGCGGCACCCTGCCGGCCACCCACCAGGCACCGTCGAGCTTCACCATGCCGCCGTTCGGCTGGCGG 
ATGAACGACCAGGAGATCGCCGACGTGGTCAACTTCATCCGCACCAGTTGGGGCAACCAGGCGCCGAGCGTC 
AGCGTCGACGAGGTCAAGCGCCTGCGCAAGGACACCGGCGCGGCGGCGGTGGGCGACATTCCGCCGCCGGGA 
CCGGCCGCGGCGGATCGCGGCTGA