ViewGene
Locus Name:
GeneID:
Location:

GeneID:1051
TrivialName: PA14_41010
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_41010
PAO1 Ortholog Locus:PA1819
Sequence Length:1356
Protein Length:451
Start: 3657578
Stop: 3656223
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG05208.1|AE004608_7 (AE004608) probable amino acid permease [Pseudomonas aeruginosa PAO1]
Identities = 450/451 (99%), Positives = 450/451 (99%)
Sequence:
ATGGCGGGGGGAGAGAAGGCCGGCAAGCGCGGCATGGGGTTCTGGACCTGCAGCGCGCTGGTGATCGGCAAC
ATGGTCGGTTCGGGAGTCTTCCTGCTTCCCTCCAGCCTGGCGGCGTTCGGCGGGCTCAGCCTGTTCGGCTGG
CTGGTGTCGAGCACCGGCGCGGTGCTGCTGGCGCTGACCTTCGCCCGCCTGGCGCGGGTCAACCCCGGCGCC
GGCGGCCCCTACGCCTATACCCGCGACGGTTTCGGCAGCTTCGCCGGCTACCTGTGCGCCTGGACCTACTGG
AAAGCCGCCTGGATCGGCAACGCGGCGATCGCCGTGACCCTGGTCGGCTACCTGCGGGTGTTCATCCCGGCG
CTGGCGGATCCGCTGCTGATGGTCTGCGTGGCCATCGCCGCGATCTGGCTGTGCACCCTGATCAACCTGCGA
GGCATCGGCACCTTCAGCGTGGTGCAGAACCTGCTGACCATCCTCAAGCTGCTGCCGTTGTTGCTGGTCGGT
ATCCTCGGCTGGTTCCACTTCAATCCCGAGCACCTGGCGATCCCGGCGCGCAGCGAGCTGCCGAACATGGGC
TATGCCCAGGCGATCGCCACCACCGCGGCGCTGACCCTTTGGTCGTTCATCGGCCTGGAGTCGGCCACCGTG
CCGGCCGACGACGTCGAGGACCCGCGCCGCACCATTCCCCGCGCGACCCTGTTCGGCACGCTGGCCGCGGCG
GCCCTCTACATCCTCTCTATCACTGCGGTGCAGGGCCTGATGCCGCCGGAGGTGCTGGCCCGCTCCACCTCG
CCGTTCGCCGACGCGGCGCGGATCCTGATGGGCGACTGGGGCTACTACCTGGTGGCTGCCGGGGCGGTGATC
GCCTGCCTGGGCGCGCTCAATGGCTGGGTCCTGTTGCAGGGCCAGATCCCGGTGGCTCCGGCGCGCGACGGG
CTGTTCCCGGAGTCGCTCGGCCAGCTCAACAAGAACGGCGCGCCGGCCCACGGCCTGCTGGCCTCGGGGCTG
CTGGTGACGGCGCTGGTGATGGTCGACGGGCATGGCGACCTGGTCGATGTGTTCAACGTGATCATCCTGCTC
GGCACCATGACCGGGGTGGTCCCCTACGCGTTCTGCACCGCCGCGCTGTTGCAGCTGCTGGCGGTGCGACCG
GACGAGTTCTCGCCGCGTTCACGCCGGCAATTGCTGGTGATCGGCTCGCTGGGCTTCGCCTACTCGCTATGG
GCGCTGTATGGCACCGGCCAGCAGGCGATCTTCTGGGGCTTCCTGGTGCTGATGGCCGGTATCCCGATGTAC
ACCTGGCGGCAATGGCGCAACCAGGTCAACGGAGTGCCGACGCTCAAAGCCAATGACTGA
Translation:
MAGGEKAGKRGMGFWTCSALVIGNMVGSGVFLLPSSLAAFGGLSLFGWLVSSTGAVLLALTFARLARVNPGA
GGPYAYTRDGFGSFAGYLCAWTYWKAAWIGNAAIAVTLVGYLRVFIPALADPLLMVCVAIAAIWLCTLINLR
GIGTFSVVQNLLTILKLLPLLLVGILGWFHFNPEHLAIPARSELPNMGYAQAIATTAALTLWSFIGLESATV
PADDVEDPRRTIPRATLFGTLAAAALYILSITAVQGLMPPEVLARSTSPFADAARILMGDWGYYLVAAGAVI
ACLGALNGWVLLQGQIPVAPARDGLFPESLGQLNKNGAPAHGLLASGLLVTALVMVDGHGDLVDVFNVIILL
GTMTGVVPYAFCTAALLQLLAVRPDEFSPRSRRQLLVIGSLGFAYSLWALYGTGQQAIFWGFLVLMAGIPMY
TWRQWRNQVNGVPTLKAND*
AnnotationID:1060GeneID:1051
AnnotatorUID: diggins
Modification Date/Time: 2005-03-01 19:07:04
Gene Name:
Confidence Code:3
GeneProduct:putative amino acid permease
Cell Localization:()
Synonyms:PA1819
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(27) Transport of small molecules
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG0531
Secondary Functional Category(ies):amino acid transport and metabolism
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAK65021.1| (AE007228) probable transport protein [Sinorhizobium meliloti]
          Length = 441

 Score =  340 bits (871), Expect = 1e-92
 Identities = 177/437 (40%), Positives = 259/437 (59%), Gaps = 10/437 (2%)

>gb|AAK25088.1| (AE005976) amino acid permease [Caulobacter crescentus CB15]
          Length = 433

 Score =  321 bits (823), Expect = 5e-87
 Identities = 172/422 (40%), Positives = 248/422 (58%), Gaps = 6/422 (1%)

>gb|AAL23118.1| (AE008901) putative APC family putrescine/ornithine transport
           protein [Salmonella typhimurium LT2]
          Length = 445

 Score =  320 bits (819), Expect = 1e-86
 Identities = 172/434 (39%), Positives = 250/434 (57%), Gaps = 6/434 (1%)






 
Structural Features:
COG0531, PotE, Amino acid transporters 
[Amino acid transport and metabolism]
CD-Length = 466 residues,  94.8% aligned
Score =  183 bits (465), Expect = 4e-47
Identities = 141/445 (31%), Positives = 226/445 (50%), Gaps = 14/445 (3%)






   
Genomic Context:






   
Comment:


















    ReferenceID:2105




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:19247




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:37112




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:1051_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:1051
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
1903
                           PA1819_tr
                           translation of PA1819
                           451
                           99.77
                           99.77
                           0
                           2326.0
     

     
     
65614
                           gb|AAG05208.1|AE004608_7
                           (AE004608) probable amino acid permease [Pseudomonas aeruginosa PAO1]
                           451
                           99.77
                           99.77
                           0
                           2326.0
     

     
     
65615
                           gb|AAQ61095.1|
                           (AE016922) probable amino acid permease [Chromobacterium violaceum ATCC 12472]
                           460
                           50.43
                           64.56
                           26
                           1138.0
     

     
     
65616
                           gb|AAK65021.1|
                           (AE007228) probable transport protein [Sinorhizobium meliloti]
                           457
                           39.38
                           57.33
                           22
                           873.0
     

     
     
65617
                           gb|AAK25088.1|
                           (AE005976) amino acid permease [Caulobacter crescentus CB15]
                           467
                           38.11
                           54.17
                           50
                           827.0
     

     






      

          
GC ORFID: 44053How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA1819Glimmer Score: 

          
Start: 1296332Stop: 1297687

          
Length: 1356


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA1819 translation of PA1819Homolog Bit Score 900.0

          
Other Homologs:  t_PA1819 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGGCGGGGGGAGAGAAGGCCGGCAAGCGCGGCATGGGGTTCTGGACCTGCAGCGCGCTGGTGATCGGCAAC 
ATGGTCGGTTCGGGAGTCTTCCTGCTTCCCTCCAGCCTGGCGGCGTTCGGCGGGCTCAGCCTGTTCGGCTGG 
CTGGTGTCGAGCACCGGCGCGGTGCTGCTGGCGCTGACCTTCGCCCGCCTGGCGCGGGTCAACCCCGGCGCC 
GGCGGCCCCTACGCCTATACCCGCGACGGTTTCGGCAGCTTCGCCGGCTACCTGTGCGCCTGGACCTACTGG 
AAAGCCGCCTGGATCGGCAACGCGGCGATCGCCGTGACCCTGGTCGGCTACCTGCGGGTGTTCATCCCGGCG 
CTGGCGGATCCGCTGCTGATGGTCTGCGTGGCCATCGCCGCGATCTGGCTGTGCACCCTGATCAACCTGCGA 
GGCATCGGCACCTTCAGCGTGGTGCAGAACCTGCTGACCATCCTCAAGCTGCTGCCGTTGTTGCTGGTCGGT 
ATCCTCGGCTGGTTCCACTTCAATCCCGAGCACCTGGCGATCCCGGCGCGCAGCGAGCTGCCGAACATGGGC 
TATGCCCAGGCGATCGCCACCACCGCGGCGCTGACCCTTTGGTCGTTCATCGGCCTGGAGTCGGCCACCGTG 
CCGGCCGACGACGTCGAGGACCCGCGCCGCACCATTCCCCGCGCGACCCTGTTCGGCACGCTGGCCGCGGCG 
GCCCTCTACATCCTCTCTATCACTGCGGTGCAGGGCCTGATGCCGCCGGAGGTGCTGGCCCGCTCCACCTCG 
CCGTTCGCCGACGCGGCGCGGATCCTGATGGGCGACTGGGGCTACTACCTGGTGGCTGCCGGGGCGGTGATC 
GCCTGCCTGGGCGCGCTCAATGGCTGGGTCCTGTTGCAGGGCCAGATCCCGGTGGCTCCGGCGCGCGACGGG 
CTGTTCCCGGAGTCGCTCGGCCAGCTCAACAAGAACGGCGCGCCGGCCCACGGCCTGCTGGCCTCGGGGCTG 
CTGGTGACGGCGCTGGTGATGGTCGACGGGCATGGCGACCTGGTCGATGTGTTCAACGTGATCATCCTGCTC 
GGCACCATGACCGGGGTGGTCCCCTACGCGTTCTGCACCGCCGCGCTGTTGCAGCTGCTGGCGGTGCGACCG 
GACGAGTTCTCGCCGCGTTCACGCCGGCAATTGCTGGTGATCGGCTCGCTGGGCTTCGCCTACTCGCTATGG 
GCGCTGTATGGCACCGGCCAGCAGGCGATCTTCTGGGGCTTCCTGGTGCTGATGGCCGGTATCCCGATGTAC 
ACCTGGCGGCAATGGCGCAACCAGGTCAACGGAGTGCCGACGCTCAAAGCCAATGACTGA