ViewGene
Locus Name:
GeneID:
Location:

GeneID:1050
TrivialName: PA14_02370
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_02370
PAO1 Ortholog Locus:PA0189
Sequence Length:1359
Protein Length:452
Start: 213643
Stop: 212285
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG03579.1|AE004456_10 (AE004456) probable porin [Pseudomonas aeruginosa PAO1]
Identities = 446/452 (98%), Positives = 448/452 (99%)
Sequence:
ATGCAAAATCTCAGACGCGCTGTATTCGCCGGCCTGGTCGCCGGCACGCTTTCCGAAGGGGCGGCCGCGACG
GCCGGGGATGGGGGCTTCGTCGAGGACAGCGAACTGCAGTTCCTCGCCCGCACCTACTACTTCAACCGCGAC
TACCGCGACAGCCCGAACAACGCCGGGCGCAACCGCTTCAAGCCCAGGAGCGAGCGCAACGGCTACCGCGAG
GAAACCACCCAGGGCCTGCGCCTCCAGTTCGCCTCCGGCTACACGCCGGGCAGCCTCGGCTTCGGCCTCGAC
GCCCATGCCATGCTCGGCCTGCAACTGGACAGCGGCGGCGGCCGCACCGGCACCGGCAACCTGCCGGTCGGC
GCCGACGGCCATCCCGACCATCGCTACGGCAAGGTCGGCGGCGCCCTCAGGCTACGCCACGGCGAAACCCGC
CTGAAGTACGGCCAGACCACCACCAGCGCGCCGGTGTTCGCCGCCAGCAGCAACCGCACGCTGTCCGGCATG
GCCTACGGCCTGCTGCTGGAGGATCGCTCGTTCGACGGGCTGCTGCTCGAGGGCGGGCGCTTCACCGCCGCC
TCCGGCCCCGGCGAATCCAAGGTCCGTGGCGACATCAGCACCGTCTACGGACGCCTCGGCGCCTATCCGGTG
CGCCTCGACGCGGTCGGCTTCCTCGGCGGTCAATGGCAGGCCACGGAGCGGCTGCAACTGTCGCTCTACGCC
TCGCGCTTCGACGACATCTGGCAGCAGGCCTATTTCGGCGCCAGCCATCGCCAGCCGCTGGGCGGGGAGCGC
GCGCTGCGGGTCGACCTCGACGCCTACCGCACCCGCGACAGCGGCCAGAGCCGCTTCGGCCGCATCGACACC
CTGGCCAGCTCCCTGGCCCTGGGCTACGAACAGGGACCGCAGCGCATCACCCTGGCCTACCAGCGTGTCCAC
GGCGAGCAGCCGTTCGACTACATGGCCTTCGGCGACGGGCGCTCCAGCGCATCCATGGTACTGGCCAACTCG
GTGGGCTACTCCGACTTCAACGGACCGGGCGAGCGTTCCTGGCAATTACGCTATGACCTGGACCTCGGCGCG
CTCGGCCTGCCTGGGCTCAGCCTGCACGCGCTGCATGCCCGCGGCCGTGCCGGGGCCAGCGCCAGCAGCGCC
GCCGAGAGCATCTACGCCGGACTCTACGGGCGTGACGGGCGGCACCGGGAAAGCGACCTCGGCTTCGCCTAC
CGGGTCAAGGCGGGCCCCCTCGCCGGCCTCGCGCTGCGCACCTCGCAGGCCTGGCACCGGGGCAACGCGAGC
TATCTCGACGGCGACATCGACGAAACCCGGCTGGTCGTCGATTACTCCCGCTCGATCTGGTGA
Translation:
MQNLRRAVFAGLVAGTLSEGAAATAGDGGFVEDSELQFLARTYYFNRDYRDSPNNAGRNRFKPRSERNGYRE
ETTQGLRLQFASGYTPGSLGFGLDAHAMLGLQLDSGGGRTGTGNLPVGADGHPDHRYGKVGGALRLRHGETR
LKYGQTTTSAPVFAASSNRTLSGMAYGLLLEDRSFDGLLLEGGRFTAASGPGESKVRGDISTVYGRLGAYPV
RLDAVGFLGGQWQATERLQLSLYASRFDDIWQQAYFGASHRQPLGGERALRVDLDAYRTRDSGQSRFGRIDT
LASSLALGYEQGPQRITLAYQRVHGEQPFDYMAFGDGRSSASMVLANSVGYSDFNGPGERSWQLRYDLDLGA
LGLPGLSLHALHARGRAGASASSAAESIYAGLYGRDGRHRESDLGFAYRVKAGPLAGLALRTSQAWHRGNAS
YLDGDIDETRLVVDYSRSIW*
AnnotationID:1059GeneID:1050
AnnotatorUID: diggins
Modification Date/Time: 2005-03-23 09:09:22
Gene Name:
Confidence Code:3
GeneProduct:putative outer membrane porin
Cell Localization:()
Synonyms:PA0189
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(15) Membrane proteins
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:pfam03573
Secondary Functional Category(ies):transport of small molecules
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
pfam03573, OprD, outer membrane porin, OprD family.
CD-Length = 449 residues,  97.1% aligned
Score =  226 bits (577), Expect = 4e-60
Identities = 135/448 (30%), Positives = 200/448 (44%), Gaps = 44/448 (9%)






   
Genomic Context:






   
Comment:


















    ReferenceID:2103




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:19245




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:33557




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:1050_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:1050
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
1900
                           PA0189_tr
                           translation of PA0189
                           452
                           98.67
                           99.11
                           0
                           2329.0
     

     
     
65608
                           gb|AAG03579.1|AE004456_10
                           (AE004456) probable porin [Pseudomonas aeruginosa PAO1]
                           452
                           98.67
                           99.11
                           0
                           2329.0
     

     
     
1902
                           PA2700_tr
                           translation of PA2700
                           473
                           40.16
                           51.16
                           59
                           772.0
     

     
     
65612
                           gb|AAG06088.1|AE004698_4
                           (AE004698) probable porin [Pseudomonas aeruginosa PAO1]
                           473
                           40.16
                           51.16
                           59
                           772.0
     

     
     
1901
                           PA0958_tr
                           translation of PA0958
                           465
                           39.78
                           55.05
                           35
                           863.0
     

     






      

          
GC ORFID: 44052How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA0189Glimmer Score: 

          
Start: 6014982Stop: 6013624

          
Length: 1359


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA0189 translation of PA0189Homolog Bit Score 901.0

          
Other Homologs:  t_PA2700 (ORF: BLASTX 295.0), t_PA0189 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGCAAAATCTCAGACGCGCTGTATTCGCCGGCCTGGTCGCCGGCACGCTTTCCGAAGGGGCGGCCGCGACG 
GCCGGGGATGGGGGCTTCGTCGAGGACAGCGAACTGCAGTTCCTCGCCCGCACCTACTACTTCAACCGCGAC 
TACCGCGACAGCCCGAACAACGCCGGGCGCAACCGCTTCAAGCCCAGGAGCGAGCGCAACGGCTACCGCGAG 
GAAACCACCCAGGGCCTGCGCCTCCAGTTCGCCTCCGGCTACACGCCGGGCAGCCTCGGCTTCGGCCTCGAC 
GCCCATGCCATGCTCGGCCTGCAACTGGACAGCGGCGGCGGCCGCACCGGCACCGGCAACCTGCCGGTCGGC 
GCCGACGGCCATCCCGACCATCGCTACGGCAAGGTCGGCGGCGCCCTCAGGCTACGCCACGGCGAAACCCGC 
CTGAAGTACGGCCAGACCACCACCAGCGCGCCGGTGTTCGCCGCCAGCAGCAACCGCACGCTGTCCGGCATG 
GCCTACGGCCTGCTGCTGGAGGATCGCTCGTTCGACGGGCTGCTGCTCGAGGGCGGGCGCTTCACCGCCGCC 
TCCGGCCCCGGCGAATCCAAGGTCCGTGGCGACATCAGCACCGTCTACGGACGCCTCGGCGCCTATCCGGTG 
CGCCTCGACGCGGTCGGCTTCCTCGGCGGTCAATGGCAGGCCACGGAGCGGCTGCAACTGTCGCTCTACGCC 
TCGCGCTTCGACGACATCTGGCAGCAGGCCTATTTCGGCGCCAGCCATCGCCAGCCGCTGGGCGGGGAGCGC 
GCGCTGCGGGTCGACCTCGACGCCTACCGCACCCGCGACAGCGGCCAGAGCCGCTTCGGCCGCATCGACACC 
CTGGCCAGCTCCCTGGCCCTGGGCTACGAACAGGGACCGCAGCGCATCACCCTGGCCTACCAGCGTGTCCAC 
GGCGAGCAGCCGTTCGACTACATGGCCTTCGGCGACGGGCGCTCCAGCGCATCCATGGTACTGGCCAACTCG 
GTGGGCTACTCCGACTTCAACGGACCGGGCGAGCGTTCCTGGCAATTACGCTATGACCTGGACCTCGGCGCG 
CTCGGCCTGCCTGGGCTCAGCCTGCACGCGCTGCATGCCCGCGGCCGTGCCGGGGCCAGCGCCAGCAGCGCC 
GCCGAGAGCATCTACGCCGGACTCTACGGGCGTGACGGGCGGCACCGGGAAAGCGACCTCGGCTTCGCCTAC 
CGGGTCAAGGCGGGCCCCCTCGCCGGCCTCGCGCTGCGCACCTCGCAGGCCTGGCACCGGGGCAACGCGAGC 
TATCTCGACGGCGACATCGACGAAACCCGGCTGGTCGTCGATTACTCCCGCTCGATCTGGTGA