ViewGene
Locus Name:
GeneID:
Location:

GeneID:1048
TrivialName: PA14_27330
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_27330
PAO1 Ortholog Locus:PA2843
Sequence Length:1347
Protein Length:448
Start: 2371741
Stop: 2370395
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG06231.1|AE004711_3 (AE004711) probable aldolase [Pseudomonas aeruginosa PAO1]
Identities = 447/448 (99%), Positives = 448/448 (100%)
Sequence:
ATGAGCCAGTCCTGGAGCCCCGAGAGCTGGAGGGCCAAGCCGATCCAGCAACAACCCGAGTACCCCGATGCC
GCGCACCTGGCCAGGGTCGAGCAGACCCTCGCCGGATACCCGCCGCTGGTCTTCGCCGGCGAGGCTCGCGAG
CTGCGCCGGCAGTTCGCCGAAGTCACCGCCGGACGCGCCTTCTTGCTCCAGGGCGGGGATTGCGCGGAAAGC
TTCGCCGAATTTTCCGCGGCGAAGATCCGCGATACCTTCAAGGTACTGTTGCAGATGGCGGTGGTAATGACC
TTCGCCGCCGGCTGCCCGGTAGTGAAGGTCGGGCGCATGGCCGGCCAGTTCGCCAAGCCGCGCTCCTCCGGC
GACGAAACGCAGAACGGCGTGACCCTGCCTGCCTATCGCGGCGACATAGTCAACGGCATCGGCTTCGACGAG
AAGAGCCGCGTGCCGGACCCGGAGCGCCTGTTGCAGGCCTACCACCAGTCCACCGCCAGCCTCAACCTGTTG
CGCGCCTTCGCCCAGGGCGGCTTCGCCGACCTGCACCAGGTGCACCGCTGGAACCTCGACTTCATCGCCAAC
TCGGCGCTGGCCGAGCGCTACCAGCAACTCGCCGACCGCATCGACGAGACCCTCGCCTTCATGCGCGCCTGC
GGCCTGGACAGCGCGCCGCAGCTCCGCGAAACCAGCTTCTTCACCGCCCACGAAGCGCTCCTGCTGAACTAC
GAGGAAGCCCTGACCCGCCGCGACAGCCTGACCGGCGAGTGGTACGACTGCTCGGCGCACATGCTCTGGATC
GGCGACCGCACCCGCCAGCTCGACGGCGCTCATGTCGAGATGCTGCGCGGCGTAGGCAATCCGATCGGGGTC
AAGGTCGGACCGAGCATGGACAGCGAGGAGCTGATCCGCCTGATCGATATTCTCAACCCGGACAACGATCCG
GGCCGCCTCAACCTGATCGTGCGGATGGGTGCCGACAAGGTCGGCGACCACCTGCCGCGCCTGATCCAGGCC
ATCCAGCGCGAGGGCCGCCAGGTGCTGTGGAGTTCCGACCCGATGCACGGCAATACCATCAAGGCCTCCAGC
GGCTACAAGACCCGCGACTTCGCCCGCGTGCTCGCCGAAGTCCGCCAGTTCTTCGAGGTGCACCAGGCCGAA
GGCAGCTACGCCGGCGGCATCCACATCGAGATGACCGGGCAGAACGTCACCGAATGCATCGGCGGTTCGCGA
CCGATCACCGAAGACGGCCTCAGCGACCGCTACCACACCCACTGCGACCCGCGGCTGAACGCCGACCAGTCG
CTGGAGCTGGCCTTCCTGATCGCCGAAACCCTGAAGCAGGTACGCCGCTGA
Translation:
MSQSWSPESWRAKPIQQQPEYPDAAHLARVEQTLAGYPPLVFAGEARELRRQFAEVTAGRAFLLQGGDCAES
FAEFSAAKIRDTFKVLLQMAVVMTFAAGCPVVKVGRMAGQFAKPRSSGDETQNGVTLPAYRGDIVNGIGFDE
KSRVPDPERLLQAYHQSTASLNLLRAFAQGGFADLHQVHRWNLDFIANSALAERYQQLADRIDETLAFMRAC
GLDSAPQLRETSFFTAHEALLLNYEEALTRRDSLTGEWYDCSAHMLWIGDRTRQLDGAHVEMLRGVGNPIGV
KVGPSMDSEELIRLIDILNPDNDPGRLNLIVRMGADKVGDHLPRLIQAIQREGRQVLWSSDPMHGNTIKASS
GYKTRDFARVLAEVRQFFEVHQAEGSYAGGIHIEMTGQNVTECIGGSRPITEDGLSDRYHTHCDPRLNADQS
LELAFLIAETLKQVRR*
AnnotationID:1057GeneID:1048
AnnotatorUID: diggins
Modification Date/Time: 2005-06-14 04:04:26
Gene Name:
Confidence Code:3
GeneProduct:putative phospho-2-dehydro-3-deoxyheptonate aldolase
Cell Localization:()
Synonyms:dhs
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(2) Amino acid biosynthesis and metabolism
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:pfam01474
Secondary Functional Category(ies):central intermediary metabolism
EC Number:2.5.1.54
Status:ACTIVE
Pathway:
Phenylalanine, tyrosine and tryptophan biosynthesis.

Metabolic intermediate biosynthesis; 
chorismate biosynthesis; 
chorismate from D-erythrose 4-phosphate and PEP: step 1.
Homology:
>gb|AAO55292.1| (AE016862) phospho-2-dehydro-3-deoxyheptonate aldolase, class II
           [Pseudomonas syringae pv. tomato str. DC3000]
          Length = 448

 Score =  820 bits (2119), Expect = 0.0
 Identities = 397/448 (88%), Positives = 428/448 (95%)

>gb|AAN67485.1|AE016375_3 (AE016780) phospho-2-dehydro-3-deoxyheptonate aldolase, class II
           [Pseudomonas putida KT2440]
          Length = 448

 Score =  819 bits (2115), Expect = 0.0
 Identities = 400/448 (89%), Positives = 425/448 (94%)

>dbj|BAC49043.1| (AP005948) phospho-2-dehydro-3-deoxyheptonate aldolase
           [Bradyrhizobium japonicum USDA 110]
          Length = 462

 Score =  617 bits (1591), Expect = e-176
 Identities = 293/449 (65%), Positives = 363/449 (80%), Gaps = 2/449 (0%)
Structural Features:
pfam01474, DAHP_synth_2, Class-II DAHP synthetase family
CD-Length = 422 residues,  99.8% aligned
Score =  593 bits (1531), Expect = 1e-170
Identities = 256/436 (58%), Positives = 311/436 (71%), Gaps = 15/436 (3%)
Genomic Context:






   
Comment:
other possible gene name: aroF


















    ReferenceID:2099




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:19241




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:36221




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:1048_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:1048
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
1898
                           PA2843_tr
                           translation of PA2843
                           448
                           99.77
                           99.99
                           0
                           2331.0
     

     
     
65452
                           gb|AAG06231.1|AE004711_3
                           (AE004711) probable aldolase [Pseudomonas aeruginosa PAO1]
                           448
                           99.77
                           99.99
                           0
                           2331.0
     

     
     
65454
                           gb|AAN67485.1|AE016375_3
                           (AE016780) phospho-2-dehydro-3-deoxyheptonate aldolase, class II [Pseudomonas putida KT2440]
                           448
                           89.28
                           94.86
                           0
                           2115.0
     

     
     
65453
                           gb|AAO55292.1|
                           (AE016862) phospho-2-dehydro-3-deoxyheptonate aldolase, class II [Pseudomonas syringae pv. tomato str. DC3000]
                           448
                           88.61
                           95.53
                           0
                           2119.0
     

     
     
65455
                           emb|CAE10511.1|
                           (BX571661) PUTATIVE ALDOLASE [Wolinella succinogenes]
                           450
                           68.66
                           83.55
                           5
                           1680.0
     

     






      

          
GC ORFID: 44050How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA2843Glimmer Score: 

          
Start: 2582186Stop: 2583532

          
Length: 1347


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA2843 translation of PA2843Homolog Bit Score 902.0

          
Other Homologs:  t_PA2843 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAGCCAGTCCTGGAGCCCCGAGAGCTGGAGGGCCAAGCCGATCCAGCAACAACCCGAGTACCCCGATGCC 
GCGCACCTGGCCAGGGTCGAGCAGACCCTCGCCGGATACCCGCCGCTGGTCTTCGCCGGCGAGGCTCGCGAG 
CTGCGCCGGCAGTTCGCCGAAGTCACCGCCGGACGCGCCTTCTTGCTCCAGGGCGGGGATTGCGCGGAAAGC 
TTCGCCGAATTTTCCGCGGCGAAGATCCGCGATACCTTCAAGGTACTGTTGCAGATGGCGGTGGTAATGACC 
TTCGCCGCCGGCTGCCCGGTAGTGAAGGTCGGGCGCATGGCCGGCCAGTTCGCCAAGCCGCGCTCCTCCGGC 
GACGAAACGCAGAACGGCGTGACCCTGCCTGCCTATCGCGGCGACATAGTCAACGGCATCGGCTTCGACGAG 
AAGAGCCGCGTGCCGGACCCGGAGCGCCTGTTGCAGGCCTACCACCAGTCCACCGCCAGCCTCAACCTGTTG 
CGCGCCTTCGCCCAGGGCGGCTTCGCCGACCTGCACCAGGTGCACCGCTGGAACCTCGACTTCATCGCCAAC 
TCGGCGCTGGCCGAGCGCTACCAGCAACTCGCCGACCGCATCGACGAGACCCTCGCCTTCATGCGCGCCTGC 
GGCCTGGACAGCGCGCCGCAGCTCCGCGAAACCAGCTTCTTCACCGCCCACGAAGCGCTCCTGCTGAACTAC 
GAGGAAGCCCTGACCCGCCGCGACAGCCTGACCGGCGAGTGGTACGACTGCTCGGCGCACATGCTCTGGATC 
GGCGACCGCACCCGCCAGCTCGACGGCGCTCATGTCGAGATGCTGCGCGGCGTAGGCAATCCGATCGGGGTC 
AAGGTCGGACCGAGCATGGACAGCGAGGAGCTGATCCGCCTGATCGATATTCTCAACCCGGACAACGATCCG 
GGCCGCCTCAACCTGATCGTGCGGATGGGTGCCGACAAGGTCGGCGACCACCTGCCGCGCCTGATCCAGGCC 
ATCCAGCGCGAGGGCCGCCAGGTGCTGTGGAGTTCCGACCCGATGCACGGCAATACCATCAAGGCCTCCAGC 
GGCTACAAGACCCGCGACTTCGCCCGCGTGCTCGCCGAAGTCCGCCAGTTCTTCGAGGTGCACCAGGCCGAA 
GGCAGCTACGCCGGCGGCATCCACATCGAGATGACCGGGCAGAACGTCACCGAATGCATCGGCGGTTCGCGA 
CCGATCACCGAAGACGGCCTCAGCGACCGCTACCACACCCACTGCGACCCGCGGCTGAACGCCGACCAGTCG 
CTGGAGCTGGCCTTCCTGATCGCCGAAACCCTGAAGCAGGTACGCCGCTGA