ViewGene
Locus Name:
GeneID:
Location:

GeneID:1047
TrivialName: PA14_51150
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_51150
PAO1 Ortholog Locus:PA1019
Sequence Length:1356
Protein Length:451
Start: 4545922
Stop: 4544567
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04408.1|AE004534_6 (AE004534) cis,cis-muconate transporter MucK [Pseudomonas aeruginosa PAO1]
Identities = 451/451 (100%), Positives = 451/451 (100%)
Sequence:
ATGAATGCAACCGCGCTTTCCCCGAACCCGGCGCCGGCCATTTCCCGGCGCACCATGCTGATCGCCTTCGTC
TTCTGCTTCCTCGGCCTGCTCGCCGACGGCGTCGACCTGATGTTCCTGGCCTACAGCCTCAACAGCCTGAAG
GCCGAATTCGGCCTGAGCAACTTCGAAGCCGGCTCCCTCGGCAGCCTGACTCTCGCCGGCATGGCCGTCGGC
GGTATCTATGGCGGCTGGTGCTGCGACCGCTTCGGCCGGGTGCGAGTGGTGACCTGGACCATCGTGCTGTTC
TCCATCGGTACCGCGTTGCTGGGGCTGACCCAGAACTACTGGCAGTTCGCGCTGATCCGCTTCGTCGCCTCG
CTCGGCCTCGGCTCGCTGTTCGTCGCCTGCAACATCCTGATGTCCGAGTGCGTCGGAACCAGGTACCGCACC
ACCATCCTCGCCGCCATGCAGGCCGGCTGGACCGTGGGCTACCTGGTGGCGACCCTGCTGGCGGGGCAGATC
ATCCCCGAGTTCGGCTGGCGCACCTTGTTCTTCACCGCCGTGGCGCCGGCGTTGGTCTGCCTGGCCCTGCGG
CCCTGGGTGCCGGAGTCGCCGTCCTGGCTCGCGGCCCAGGCCGGGCGCCAGCGTCCCGGCGCGGCTCCGCAG
AGCCACGCCGAGGCTGGCGGCGCCGGCCCGCTGGGACGGATGCTGGGCGATCCGGAAACGCGCGGCATGTTC
CTGCTCTGGAGCCTCACCTCCTGCTTCCTGCTGTTCGGCTACTACGGCACCAACAACTGGATGCCGTCCTAC
CTGGAGAGCGAGTTGGGGATGAACTTCAAGTCGATGACCGGCTACATGGTCGGCACCTACAGCGCGATGATC
CTCGGCAAGGTCGCCGCCGGTGTCTGCGCCGATCTCTTCGGCCGGCGCCTGACCTTCGCCGCCGGGGCCATC
GGCAGCGCCGCCTTCATGCCGTTGATCGTGTTCTACCACTCGCCCTCCAACATCCTCTGGATCCTCATCACC
TTCGGCTTCATCTACGGCGTTCCGGTCGGGGTGCTGGCAACCTACATGACCGAGAGCTTCTCCACCCGCGTC
CGCGGCTCGGCGGTGGGCACCGCCTACAACCTGGGGCGTATCGGCGCGGCGGTGGCGCCCGCCGGCATCGGC
CTGCTGGCCACCCACGTGTCGATCGGCGCGGGTTTCCTGGTGATGGGCATCACCTACGTGCTCACCGGGCTG
ATCCCGGCGCTGTTCATTGCGGACCGGCTCTACGACCCGAACCGCGAGTCCCGCGATGCCGAGAGCGCTTCC
CGACGGCAAGCGCCGGGCAGTGCCGTGGATACCGCCGAGCGGCGCGCGGCCAAGGCCTGA
Translation:
MNATALSPNPAPAISRRTMLIAFVFCFLGLLADGVDLMFLAYSLNSLKAEFGLSNFEAGSLGSLTLAGMAVG
GIYGGWCCDRFGRVRVVTWTIVLFSIGTALLGLTQNYWQFALIRFVASLGLGSLFVACNILMSECVGTRYRT
TILAAMQAGWTVGYLVATLLAGQIIPEFGWRTLFFTAVAPALVCLALRPWVPESPSWLAAQAGRQRPGAAPQ
SHAEAGGAGPLGRMLGDPETRGMFLLWSLTSCFLLFGYYGTNNWMPSYLESELGMNFKSMTGYMVGTYSAMI
LGKVAAGVCADLFGRRLTFAAGAIGSAAFMPLIVFYHSPSNILWILITFGFIYGVPVGVLATYMTESFSTRV
RGSAVGTAYNLGRIGAAVAPAGIGLLATHVSIGAGFLVMGITYVLTGLIPALFIADRLYDPNRESRDAESAS
RRQAPGSAVDTAERRAAKA*
AnnotationID:1056GeneID:1047
AnnotatorUID: danlee
Modification Date/Time: 2004-05-18 17:05:51
Gene Name:mucK
Confidence Code:2
GeneProduct:cis,cis-muconate transporter MucK
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(15) Membrane proteins
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:pfam00083
Secondary Functional Category(ies):Transport of small molecules
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
pfam00083, Sugar_tr, Sugar (and other) transporter.
        CD-Length = 448 residues,  90.4% aligned
        Score =  129 bits (325), Expect = 9e-31






   
Genomic Context:






   
Comment:


















    ReferenceID:2097




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:17004




  
Author/Investigator(s):
        





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:
NCBI - Conserved Domain Search.






    
Reference Type:Blast (text/plain)







    
Data:PA1019_CDS.cgi


    		




 
URL:

















    ReferenceID:19239




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:1047
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
1897
                           PA1019_tr
                           translation of PA1019
                           451
                           99.99
                           99.99
                           0
                           2330.0
     

     
     
65447
                           gb|AAG04408.1|AE004534_6
                           (AE004534) cis,cis-muconate transporter MucK [Pseudomonas aeruginosa PAO1]
                           451
                           99.99
                           99.99
                           0
                           2330.0
     

     
     
65449
                           gb|AAC27117.1|
                           (U87258) cis,cis-muconate transport protein MucK [Acinetobacter sp. ADP1]
                           451
                           55.65
                           68.29
                           38
                           1318.0
     

     
     
65448
                           gb|AAN33423.1|AE014523_9
                           (AE014523) cis,cis-muconate transport protein MucK [Brucella suis 1330]
                           459
                           55.11
                           70.37
                           40
                           1369.0
     

     
     
65450
                           gb|AAL09095.1|
                           (L05770) DcaK [Acinetobacter sp. ADP1]
                           455
                           46.59
                           63.07
                           33
                           1096.0
     

     






      

          
GC ORFID: 44049How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA1019Glimmer Score: 

          
Start: 407986Stop: 409341

          
Length: 1356


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA1019 translation of PA1019Homolog Bit Score 902.0

          
Other Homologs:  t_PA1019 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAATGCAACCGCGCTTTCCCCGAACCCGGCGCCGGCCATTTCCCGGCGCACCATGCTGATCGCCTTCGTC 
TTCTGCTTCCTCGGCCTGCTCGCCGACGGCGTCGACCTGATGTTCCTGGCCTACAGCCTCAACAGCCTGAAG 
GCCGAATTCGGCCTGAGCAACTTCGAAGCCGGCTCCCTCGGCAGCCTGACTCTCGCCGGCATGGCCGTCGGC 
GGTATCTATGGCGGCTGGTGCTGCGACCGCTTCGGCCGGGTGCGAGTGGTGACCTGGACCATCGTGCTGTTC 
TCCATCGGTACCGCGTTGCTGGGGCTGACCCAGAACTACTGGCAGTTCGCGCTGATCCGCTTCGTCGCCTCG 
CTCGGCCTCGGCTCGCTGTTCGTCGCCTGCAACATCCTGATGTCCGAGTGCGTCGGAACCAGGTACCGCACC 
ACCATCCTCGCCGCCATGCAGGCCGGCTGGACCGTGGGCTACCTGGTGGCGACCCTGCTGGCGGGGCAGATC 
ATCCCCGAGTTCGGCTGGCGCACCTTGTTCTTCACCGCCGTGGCGCCGGCGTTGGTCTGCCTGGCCCTGCGG 
CCCTGGGTGCCGGAGTCGCCGTCCTGGCTCGCGGCCCAGGCCGGGCGCCAGCGTCCCGGCGCGGCTCCGCAG 
AGCCACGCCGAGGCTGGCGGCGCCGGCCCGCTGGGACGGATGCTGGGCGATCCGGAAACGCGCGGCATGTTC 
CTGCTCTGGAGCCTCACCTCCTGCTTCCTGCTGTTCGGCTACTACGGCACCAACAACTGGATGCCGTCCTAC 
CTGGAGAGCGAGTTGGGGATGAACTTCAAGTCGATGACCGGCTACATGGTCGGCACCTACAGCGCGATGATC 
CTCGGCAAGGTCGCCGCCGGTGTCTGCGCCGATCTCTTCGGCCGGCGCCTGACCTTCGCCGCCGGGGCCATC 
GGCAGCGCCGCCTTCATGCCGTTGATCGTGTTCTACCACTCGCCCTCCAACATCCTCTGGATCCTCATCACC 
TTCGGCTTCATCTACGGCGTTCCGGTCGGGGTGCTGGCAACCTACATGACCGAGAGCTTCTCCACCCGCGTC 
CGCGGCTCGGCGGTGGGCACCGCCTACAACCTGGGGCGTATCGGCGCGGCGGTGGCGCCCGCCGGCATCGGC 
CTGCTGGCCACCCACGTGTCGATCGGCGCGGGTTTCCTGGTGATGGGCATCACCTACGTGCTCACCGGGCTG 
ATCCCGGCGCTGTTCATTGCGGACCGGCTCTACGACCCGAACCGCGAGTCCCGCGATGCCGAGAGCGCTTCC 
CGACGGCAAGCGCCGGGCAGTGCCGTGGATACCGCCGAGCGGCGCGCGGCCAAGGCCTGA