ViewGene
Locus Name:
GeneID:
Location:

GeneID:1046
TrivialName: PA14_69750
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_69750
PAO1 Ortholog Locus:PA5283
Sequence Length:1377
Protein Length:458
Start: 6220496
Stop: 6221872
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG08668.1|AE004941_1 (AE004941) probable transcriptional regulator [Pseudomonas aeruginosa PAO1]
Identities = 453/458 (98%), Positives = 454/458 (99%)
Sequence:
ATGCACCTCCGGATCGACCGCAATGCCAGCGAGCCGCTGGTGCAGCAGATCGTCGCAGGGGTCAGCGGCTGG
ATCCGCGGCAATCGCGTCCGCGCCGGCACGCGGATTCCGTCGATACGCCAGTTGGCCAGGGAAAACCAGCTC
AGCCAGTCCAGCGTGATCGAGGCCTACGACCGCCTGGTCGCCCTGGGGATGCTGGAATCGCGGCACGGCTCG
GGGTTCTTCGTCGCCGAGGCACCCACCGCCGCTACCGAACTCGACAGCGAGTGGCACGAAGGCGCGGAAAAC
GCATGGGGCCAGTTCAGCGGCAGCTCGACGAAACTCAAGCTCGGCTGCGGCTGGATTCCGGACAGCTGGCGG
GAAGTCGAGGAACTCAGCTACGCGATCCGCCAGGTCGCCCGCAGCGAACTCGCCGGGCTGTTCGACTACAGC
ACTCCGCTGGGCCTGCCGGCGCTGCGCCAGCACATCCagAAACGCCTGCGGCTGATCGATATCCATGTCGAC
CCGGAGCAGATCCTCACCACCACCGGCGCCAGCCATGCCCTCGACCTGTTGGTACGCACGCTGCTCAAGCCG
GGCGACGTGGTGGTGGTGGAGAACCCCGGCTACTACAACCTGTTCAACCTGCTGAAATTCCACGGGGTGAAG
ATGCTCGGCGTGCCGCGCACCCGCCACGGCCCGGACACCGCCGCGCTGGAGGCGATCCTCCTCGCACACAAG
CCGAAGTTCCTTTTCACCAACAGCATGTACCACAACCCCACCGGCACCAGCCTCAGCCCCTCGGTGGCCCAC
CGCGTGCTGCAACTGGCCGAGCAGCATGATTTCCACATCGTCGAGGATGACATCTACGCCGACTTCCAGAAC
GGCCCCAGCACCCGCCTGGCAACCCTCGATTCGCTGCGCCGGGTGATCTACCTGGCGAGCTTTTCGAAGACC
CTCAGTTGCTCGCTACGGGTCGGCTACCTGATCGCCGGCCCCGAGCTGATCCGGCGCCTGGCGGATGTGAAG
ATGTACACCAGTATCGGCAGCCAGCGCTTCGCCGAATGCGTGGTCTCGACCATGCTCGCCAACGGCAGTTAC
CGCAAGCTGGTGCAACGCCTGCGCCAGCGCCTGACCCGGCAGATGGCGGCGACCCTGCGGGTGCTTGGGGAC
AACGGCTGGGAGGTGTTCGCCGAACCGGTCGGCGGGATGTTCGTCTGGGCCCGTATCGGCGACTACCCGTTC
GCCGAATTGCAGGCCGTGGCGACACGCCTGGACGTGCTGCTGTCGCCGGGCAGCGGCTTCAGCCCGGAAGGC
GAGGAGAGCGACTGGCTGCGTATCAACATCGCCTATGCCAGCGACCCGCGGGCCCTGGCGTTCTTCGAGGCG
TTCGGGTGA
Translation:
MHLRIDRNASEPLVQQIVAGVSGWIRGNRVRAGTRIPSIRQLARENQLSQSSVIEAYDRLVALGMLESRHGS
GFFVAEAPTAATELDSEWHEGAENAWGQFSGSSTKLKLGCGWIPDSWREVEELSYAIRQVARSELAGLFDYS
TPLGLPALRQHIQKRLRLIDIHVDPEQILTTTGASHALDLLVRTLLKPGDVVVVENPGYYNLFNLLKFHGVK
MLGVPRTRHGPDTAALEAILLAHKPKFLFTNSMYHNPTGTSLSPSVAHRVLQLAEQHDFHIVEDDIYADFQN
GPSTRLATLDSLRRVIYLASFSKTLSCSLRVGYLIAGPELIRRLADVKMYTSIGSQRFAECVVSTMLANGSY
RKLVQRLRQRLTRQMAATLRVLGDNGWEVFAEPVGGMFVWARIGDYPFAELQAVATRLDVLLSPGSGFSPEG
EESDWLRINIAYASDPRALAFFEAFG*
AnnotationID:1055GeneID:1046
AnnotatorUID: diggins
Modification Date/Time: 2005-03-16 08:08:07
Gene Name:
Confidence Code:3
GeneProduct:putative transcriptional regulator
Cell Localization:()
Synonyms:PA5283
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(25) Transcriptional regulators
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG1167
Secondary Functional Category(ies):transport of small molecules
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
COG1167, ARO8, Transcriptional regulators containing a DNA-binding HTH domain 
and an aminotransferase domain (MocR family) and their eukaryotic orthologs 
[Transcription / Amino acid transport and metabolism]
CD-Length = 459 residues,  97.6% aligned
Score =  351 bits (901), Expect = 1e-97
Identities = 153/456 (33%), Positives = 229/456 (50%), Gaps = 16/456 (3%)








   
Genomic Context:






   
Comment:


















    ReferenceID:2095




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:19237




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:34800




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:1046_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:1046
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
1896
                           PA5283_tr
                           translation of PA5283
                           458
                           98.90
                           99.12
                           0
                           2334.0
     

     
     
65438
                           gb|AAG08668.1|AE004941_1
                           (AE004941) probable transcriptional regulator [Pseudomonas aeruginosa PAO1]
                           458
                           98.90
                           99.12
                           0
                           2334.0
     

     
     
65439
                           dbj|BAB48581.1|
                           (AP002996) probable transcriptional regulator [Mesorhizobium loti]
                           475
                           41.05
                           56.42
                           20
                           884.0
     

     
     
65440
                           emb|CAC48442.1|
                           (AL603642) putative transcriptional regulator protein [Sinorhizobium meliloti]
                           476
                           40.33
                           55.67
                           20
                           876.0
     

     
     
65446
                           gb|AAO58205.1|
                           (AE016873) transcriptional regulator, GntR family/aminotransferase, class I [Pseudomonas syringae pv. tomato str. DC3000]
                           466
                           39.69
                           55.79
                           28
                           773.0
     

     






      

          
GC ORFID: 44048How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA5283Glimmer Score: 

          
Start: 5484183Stop: 5485559

          
Length: 1377


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA5283 translation of PA5283Homolog Bit Score 903.0

          
Other Homologs:  psyr_15may02_Scaffold4_revised_gene5712 (ORF: BLASTX 303.0), t_PA5283 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGCACCTCCGGATCGACCGCAATGCCAGCGAGCCGCTGGTGCAGCAGATCGTCGCAGGGGTCAGCGGCTGG 
ATCCGCGGCAATCGCGTCCGCGCCGGCACGCGGATTCCGTCGATACGCCAGTTGGCCAGGGAAAACCAGCTC 
AGCCAGTCCAGCGTGATCGAGGCCTACGACCGCCTGGTCGCCCTGGGGATGCTGGAATCGCGGCACGGCTCG 
GGGTTCTTCGTCGCCGAGGCACCCACCGCCGCTACCGAACTCGACAGCGAGTGGCACGAAGGCGCGGAAAAC 
GCATGGGGCCAGTTCAGCGGCAGCTCGACGAAACTCAAGCTCGGCTGCGGCTGGATTCCGGACAGCTGGCGG 
GAAGTCGAGGAACTCAGCTACGCGATCCGCCAGGTCGCCCGCAGCGAACTCGCCGGGCTGTTCGACTACAGC 
ACTCCGCTGGGCCTGCCGGCGCTGCGCCAGCACATCCagAAACGCCTGCGGCTGATCGATATCCATGTCGAC 
CCGGAGCAGATCCTCACCACCACCGGCGCCAGCCATGCCCTCGACCTGTTGGTACGCACGCTGCTCAAGCCG 
GGCGACGTGGTGGTGGTGGAGAACCCCGGCTACTACAACCTGTTCAACCTGCTGAAATTCCACGGGGTGAAG 
ATGCTCGGCGTGCCGCGCACCCGCCACGGCCCGGACACCGCCGCGCTGGAGGCGATCCTCCTCGCACACAAG 
CCGAAGTTCCTTTTCACCAACAGCATGTACCACAACCCCACCGGCACCAGCCTCAGCCCCTCGGTGGCCCAC 
CGCGTGCTGCAACTGGCCGAGCAGCATGATTTCCACATCGTCGAGGATGACATCTACGCCGACTTCCAGAAC 
GGCCCCAGCACCCGCCTGGCAACCCTCGATTCGCTGCGCCGGGTGATCTACCTGGCGAGCTTTTCGAAGACC 
CTCAGTTGCTCGCTACGGGTCGGCTACCTGATCGCCGGCCCCGAGCTGATCCGGCGCCTGGCGGATGTGAAG 
ATGTACACCAGTATCGGCAGCCAGCGCTTCGCCGAATGCGTGGTCTCGACCATGCTCGCCAACGGCAGTTAC 
CGCAAGCTGGTGCAACGCCTGCGCCAGCGCCTGACCCGGCAGATGGCGGCGACCCTGCGGGTGCTTGGGGAC 
AACGGCTGGGAGGTGTTCGCCGAACCGGTCGGCGGGATGTTCGTCTGGGCCCGTATCGGCGACTACCCGTTC 
GCCGAATTGCAGGCCGTGGCGACACGCCTGGACGTGCTGCTGTCGCCGGGCAGCGGCTTCAGCCCGGAAGGC 
GAGGAGAGCGACTGGCTGCGTATCAACATCGCCTATGCCAGCGACCCGCGGGCCCTGGCGTTCTTCGAGGCG 
TTCGGGTGA