ViewGene
Locus Name:
GeneID:
Location:

GeneID:1045
TrivialName: PA14_68810
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_68810
PAO1 Ortholog Locus:PA5209
Sequence Length:1365
Protein Length:454
Start: 6136038
Stop: 6137402
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG08594.1|AE004934_1 (AE004934) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 451/454 (99%), Positives = 453/454 (99%)
Sequence:
ATGCAGAAAGAAACCGAAATCAAACTCCGCGTCAGCCGCGCCACCCTGGAAGCCTTGCAGGAGCACCCGTTG
CTGAAGAAACGCAACAAATCGGGCTGGGAGCGCCGCGAACTGTACAACCAGTACTACGACACCCCCGGCCGC
GAGCTGGCCCGGGCCAAGGTCGCGCTGCGCATGCGCCGCGACGGCGAGCAGTACATCCAGACGCTGAAGAGC
CGCGGGCAGAGCGTGGCCGGGCTGTCCGAACGCAACGAGTGGGACTGGTACCTGGAAAAGAACAAGCTCGAC
CTGAAGAAACTCGACGACAAGTGCTGGCCGGCGGCCCTCAAGGACCTCGACAAGAAGCAGCTCAAGCCGATC
TTCAGCACCGACTTCGTCCGCCAGCGCGCCGAGATCGCCTGGGGCCGCGGCAAGGCCAGGGTAGTCGTGGAG
GCGGCGCTCGACCTGGGCAAGGTGGTCGCCGGCGACAACCAGGAGGAAATCTGCGAACTGGAGCTGGAACTG
CGCCAGGGCGATGCCGCCGCGCTGCTCGAGCTGGCCGCGGAACTGGCCGCCGACCTGCCGCTGATGCCCTGC
GACATCAGCAAGGCCGAGCGCGGCTACCGCTTGTTCGACCCGAACAGCTACGAGGTCGATCCCCCGGCGCAG
AAACTGCTGGCGGAAACCCCGCTGGACGGTGCCTTCGCCGCCATCGCCTGGTACCTGCTCGGCAGCAGCCAG
CGACTGGCCGAACAGTATCGCTTCAACGGCCACTGGCGCCTGCTGGAGGACTGGCTGCAACACCTGCAGGAC
CTGCGTACCCTGCTCGGCAGCCTCGGCCAGGCGGTGCCACGCGCCAGCAGTCGCGAGCTGCGCGAAGCGCTG
GACGCTCTCCTCGCCGACTGGGCGCCGCGCATCGAGCGCGGCCGTGACGACGAGACGCTACGCCAGCAGGCG
CCGCAACTGTTCCGCGGCGAACTCGACGAGACCCGCTGGGGCCTGTTCTCCCTGAATGCCTCGCGCTGGCTG
CTGGCCAAGGCCTGGACCGAGTCGCGCAACGAGCGCGGCAACCGCCAGGGCGCCGCCGCGCTGGGCAAATGG
CTGCTGCGCAGCCTTGCCGAAGAAGCCCAGGCCACGCCGCTGGCGCGCGCCCACCAGCATCCCGAGCTGCTT
CCCGACCAAGCGCCGCGCCTGCAGCGCATGCTTACCTGGTTGCGCCTGGCGCGCGGCGTGCTCGACCTGCCG
GAAGCCGACCGCCTCTACGGCGAACTGGCCAAGTTGCTGGAGCTGCTGCGGCAACCTGTCGATGCCGAGCGC
CTGGCTGCCCGCGCCACGCAGGCCCATACTGTGCTGACGCTCAAACCCTGGAAGGCGCTGATGAAATAA
Translation:
MQKETEIKLRVSRATLEALQEHPLLKKRNKSGWERRELYNQYYDTPGRELARAKVALRMRRDGEQYIQTLKS
RGQSVAGLSERNEWDWYLEKNKLDLKKLDDKCWPAALKDLDKKQLKPIFSTDFVRQRAEIAWGRGKARVVVE
AALDLGKVVAGDNQEEICELELELRQGDAAALLELAAELAADLPLMPCDISKAERGYRLFDPNSYEVDPPAQ
KLLAETPLDGAFAAIAWYLLGSSQRLAEQYRFNGHWRLLEDWLQHLQDLRTLLGSLGQAVPRASSRELREAL
DALLADWAPRIERGRDDETLRQQAPQLFRGELDETRWGLFSLNASRWLLAKAWTESRNERGNRQGAAALGKW
LLRSLAEEAQATPLARAHQHPELLPDQAPRLQRMLTWLRLARGVLDLPEADRLYGELAKLLELLRQPVDAER
LAARATQAHTVLTLKPWKALMK*
AnnotationID:1054GeneID:1045
AnnotatorUID: diggins
Modification Date/Time: 2005-03-15 21:09:41
Gene Name:
Confidence Code:3
GeneProduct:putative adenylate cyclase
Cell Localization:()
Synonyms:PA5209
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(20) Putative enzymes
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAO53867.1| (AE016857) adenylate cyclase [Pseudomonas syringae pv. tomato str.
           DC3000]
          Length = 471

 Score =  613 bits (1580), Expect = e-175
 Identities = 306/454 (67%), Positives = 358/454 (78%)








 
Structural Features:






   
Genomic Context:






   
Comment:


















    ReferenceID:2093




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:19235




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:34844




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:1045_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:1045
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
1895
                           PA5209_tr
                           translation of PA5209
                           454
                           99.33
                           99.77
                           0
                           2333.0
     

     
     
65434
                           gb|AAG08594.1|AE004934_1
                           (AE004934) hypothetical protein PA5209 [Pseudomonas aeruginosa PAO1]
                           454
                           99.33
                           99.77
                           0
                           2333.0
     

     
     
65435
                           gb|AAO53867.1|
                           (AE016857) adenylate cyclase [Pseudomonas syringae pv. tomato str. DC3000]
                           471
                           64.96
                           76.00
                           17
                           1580.0
     

     
     
65437
                           gb|AAN70752.1|AE016719_3
                           (AE016793) conserved hypothetical protein [Pseudomonas putida KT2440]
                           455
                           63.51
                           76.04
                           1
                           1496.0
     

     
     
65436
                           gb|AAQ82444.1|
                           (AY374326) hypothetical protein [Pseudomonas syringae pv. syringae]
                           484
                           63.22
                           73.96
                           30
                           1573.0
     

     






      

          
GC ORFID: 44047How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA5209Glimmer Score: 

          
Start: 5399724Stop: 5401088

          
Length: 1365


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TAATruncated Stop: 

          
Homolog: t_PA5209 translation of PA5209Homolog Bit Score 903.0

          
Other Homologs:  psyr_15may02_Scaffold2_revised_gene3911 (ORF: BLASTX 608.0), t_PA5209 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGCAGAAAGAAACCGAAATCAAACTCCGCGTCAGCCGCGCCACCCTGGAAGCCTTGCAGGAGCACCCGTTG 
CTGAAGAAACGCAACAAATCGGGCTGGGAGCGCCGCGAACTGTACAACCAGTACTACGACACCCCCGGCCGC 
GAGCTGGCCCGGGCCAAGGTCGCGCTGCGCATGCGCCGCGACGGCGAGCAGTACATCCAGACGCTGAAGAGC 
CGCGGGCAGAGCGTGGCCGGGCTGTCCGAACGCAACGAGTGGGACTGGTACCTGGAAAAGAACAAGCTCGAC 
CTGAAGAAACTCGACGACAAGTGCTGGCCGGCGGCCCTCAAGGACCTCGACAAGAAGCAGCTCAAGCCGATC 
TTCAGCACCGACTTCGTCCGCCAGCGCGCCGAGATCGCCTGGGGCCGCGGCAAGGCCAGGGTAGTCGTGGAG 
GCGGCGCTCGACCTGGGCAAGGTGGTCGCCGGCGACAACCAGGAGGAAATCTGCGAACTGGAGCTGGAACTG 
CGCCAGGGCGATGCCGCCGCGCTGCTCGAGCTGGCCGCGGAACTGGCCGCCGACCTGCCGCTGATGCCCTGC 
GACATCAGCAAGGCCGAGCGCGGCTACCGCTTGTTCGACCCGAACAGCTACGAGGTCGATCCCCCGGCGCAG 
AAACTGCTGGCGGAAACCCCGCTGGACGGTGCCTTCGCCGCCATCGCCTGGTACCTGCTCGGCAGCAGCCAG 
CGACTGGCCGAACAGTATCGCTTCAACGGCCACTGGCGCCTGCTGGAGGACTGGCTGCAACACCTGCAGGAC 
CTGCGTACCCTGCTCGGCAGCCTCGGCCAGGCGGTGCCACGCGCCAGCAGTCGCGAGCTGCGCGAAGCGCTG 
GACGCTCTCCTCGCCGACTGGGCGCCGCGCATCGAGCGCGGCCGTGACGACGAGACGCTACGCCAGCAGGCG 
CCGCAACTGTTCCGCGGCGAACTCGACGAGACCCGCTGGGGCCTGTTCTCCCTGAATGCCTCGCGCTGGCTG 
CTGGCCAAGGCCTGGACCGAGTCGCGCAACGAGCGCGGCAACCGCCAGGGCGCCGCCGCGCTGGGCAAATGG 
CTGCTGCGCAGCCTTGCCGAAGAAGCCCAGGCCACGCCGCTGGCGCGCGCCCACCAGCATCCCGAGCTGCTT 
CCCGACCAAGCGCCGCGCCTGCAGCGCATGCTTACCTGGTTGCGCCTGGCGCGCGGCGTGCTCGACCTGCCG 
GAAGCCGACCGCCTCTACGGCGAACTGGCCAAGTTGCTGGAGCTGCTGCGGCAACCTGTCGATGCCGAGCGC 
CTGGCTGCCCGCGCCACGCAGGCCCATACTGTGCTGACGCTCAAACCCTGGAAGGCGCTGATGAAATAA