ViewGene
Locus Name:
GeneID:
Location:

GeneID:1044
TrivialName: PA14_68250
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_68250
PAO1 Ortholog Locus:PA5166
Sequence Length:1389
Protein Length:462
Start: 6087733
Stop: 6089121
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG08551.1|AE004929_6 (AE004929) probable two-component response regulator [Pseudomonas aeruginosa PAO1]
Identities = 462/462 (100%), Positives = 462/462 (100%)
Sequence:
ATGAGTCCCTTCGCGCCATTCGATGCCCAGACCCAGGTCCTGCTGATCGACGACGATCCGCACCTGCGCCAG
GCCCTGCGCCAGACGCTCGACCTCGCCGGGCTCAAGGTCGCGACCCTGGACGACGCGCGCCAGCTGGATACC
GCGCAGTGCAAGGACTGGCCCGGGGTGGTGGTCAGCGACATCCGCATGCCCGGCATCGATGGCATGGAACTG
CTCCGCCAATTGCACGAACAGGACGCCGACCTGCCGGTGATCCTGATCACCGGCCACGGCGACGTGCCGCTG
GCGGTCCAGGCCATGCGCGGCGGCGCCTACGACTTCCTGGAAAAGCCCTTTCCCAGCGACGCCCTGCTCGAC
AGCGTGCGCCGCGCCCTGGAGGTGCGCCGGCTGGTCCTGGAGAACCGCACCCTGCGCCTGGCCCTGGCCGAA
CGCCACGAACTGCATGGGCGCCTGATCGGACGCTCGGCCGGCATGCAGCGCCTGCGCGAGCAGGTCGGCTCG
CTGGCGGCGATCCAGGCCGACGTGCTGGTCCTTGGCGAAACCGGCGCCGGCAAGGAGGTGGTCGCGCGGGCC
CTGCATGACCTGTCGAGCCGACGCGACGGACCGTTCGTCGCGATCAACGCCGGCGCTCTCGCCGAATCGGTG
GTGGAAAGCGAACTGTTCGGCCACGAGGCCGGCGCCTTCACCGGCGCGCAGAAGCGCCGCATCGGCAAGTTC
GAGTACGCCAATGGCGGCACCCTGTTCCTCGACGAGATCGAGAGCATGAGCCTGGACGTGCAGGTCAAGCTG
TTGCGCCTGCTGCAGGAACGGGTAGTCGAGCGGCTCGGCTCCAACCAGCTGATCCCGCTGGATATCCGCATC
ATCGCGGCAACCAAGGAAGACCTGCGCCAGGCCGCCGACCAGGGCCGCTTCCGCGCCGACCTCTATTACCGC
CTCAACGTCGCCAGCTTGCGCATCCCACCGCTGCGCGAGCGCGGCGAGGACATCCCGCTGCTGTTCCGCCAT
TTCGCCGAAGCCGGCGCCATGCGCCATGGCCTGACGCCACGCGAACTGGACGCCGGCCAGTCGGCGCGCCTG
CTGGCCTACGACTGGCCGGGCAACGTGCGCGAATTGCAGAACGCCGCCGAGCGCTTCGCCCTGGGCCTCGGC
CTGAGCCTGGACGACGGAGTCCTGCCCGACGCCGCCGACGAGCCGCACAACCTCAGCGCCAAGGTCGAGGCC
TTCGAACGCTCGCTGATCGCCGCCGAGCTGGAACGCCCGCACAATTCGCTGCGTAGCGTCGCCGAGGCCCTC
GGTATCCCGCGCAAGACCCTGCACGACAAGCTGCGCAAGCACGGCCTGCCGTTCAACACGCCTGGCGAGAAT
CCGCCAGATGATGGCGAATGA
Translation:
MSPFAPFDAQTQVLLIDDDPHLRQALRQTLDLAGLKVATLDDARQLDTAQCKDWPGVVVSDIRMPGIDGMEL
LRQLHEQDADLPVILITGHGDVPLAVQAMRGGAYDFLEKPFPSDALLDSVRRALEVRRLVLENRTLRLALAE
RHELHGRLIGRSAGMQRLREQVGSLAAIQADVLVLGETGAGKEVVARALHDLSSRRDGPFVAINAGALAESV
VESELFGHEAGAFTGAQKRRIGKFEYANGGTLFLDEIESMSLDVQVKLLRLLQERVVERLGSNQLIPLDIRI
IAATKEDLRQAADQGRFRADLYYRLNVASLRIPPLRERGEDIPLLFRHFAEAGAMRHGLTPRELDAGQSARL
LAYDWPGNVRELQNAAERFALGLGLSLDDGVLPDAADEPHNLSAKVEAFERSLIAAELERPHNSLRSVAEAL
GIPRKTLHDKLRKHGLPFNTPGENPPDDGE*
AnnotationID:1053GeneID:1044
AnnotatorUID: danlee
Modification Date/Time: 2004-02-04 14:02:31
Gene Name:
Confidence Code:3
GeneProduct:probable two-component response regulator
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(28) Two-component regulatory systems
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG2204, COG3829, COG3604, mor
Secondary Functional Category(ies):Transport of small molecules; Transcriptional regulators
EC Number:
Status:ACTIVE
Pathway:
Two-component System
Homology:






 
Structural Features:






   
Genomic Context:






   
Comment:


















    ReferenceID:2091




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:17002




  
Author/Investigator(s):
        





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:
NCBI - Conserved Domain Search.






    
Reference Type:Blast (text/plain)







    
Data:PA5166_CDS.cgi


    		




 
URL:

















    ReferenceID:19233




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:1044
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
1881
                           PA5166_tr
                           translation of PA5166
                           462
                           99.99
                           99.99
                           0
                           2334.0
     

     
     
65015
                           gb|AAG08551.1|AE004929_6
                           (AE004929) probable two-component response regulator [Pseudomonas aeruginosa PAO1]
                           462
                           99.99
                           99.99
                           0
                           2334.0
     

     
     
65016
                           emb|CAC44170.1|
                           (AJ313422) C4 dicarboxylate transport response regulator protein [Pseudomonas stutzeri]
                           464
                           76.72
                           84.05
                           2
                           1738.0
     

     
     
65017
                           gb|AAO58821.1|
                           (AE016875) sigma-54 dependent transcriptional regulator/response regulator [Pseudomonas syringae pv. tomato str. DC3000]
                           462
                           75.75
                           84.63
                           1
                           1730.0
     

     
     
65018
                           gb|AAN65894.1|AE016217_6
                           (AE016775) sigma-54 dependent response regulator [Pseudomonas putida KT2440]
                           470
                           75.10
                           84.04
                           10
                           1732.0
     

     






      

          
GC ORFID: 44046How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA5166Glimmer Score: 

          
Start: 5351419Stop: 5352807

          
Length: 1389


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA5166 translation of PA5166Homolog Bit Score 903.0

          
Other Homologs:  psyr_15may02_Scaffold14_revised_gene2286 (ORF: BLASTX 662.0), t_PA5511 (ORF: BLASTX 455.0), psyr_15may02_Scaffold5_revised_gene6135 (ORF: BLASTX 447.0), t_PA1335 (ORF: BLASTX 424.0), t_PA1945 (ORF: BLASTX 247.0), psyr_15may02_Scaffold3_revised_gene4480 (ORF: BLASTX 231.0), psyr_15may02_Scaffold1_revised_gene1290 (ORF: BLASTX 228.0), psyr_15may02_Scaffold3_revised_gene4481 (ORF: BLASTX 215.0), t_PA1196 (ORF: BLASTX 206.0), psyr_15may02_Scaffold2_revised_gene4053 (ORF: BLASTX 200.0), t_PA3932 (ORF: BLASTX 163.0), t_PA5166 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAGTCCCTTCGCGCCATTCGATGCCCAGACCCAGGTCCTGCTGATCGACGACGATCCGCACCTGCGCCAG 
GCCCTGCGCCAGACGCTCGACCTCGCCGGGCTCAAGGTCGCGACCCTGGACGACGCGCGCCAGCTGGATACC 
GCGCAGTGCAAGGACTGGCCCGGGGTGGTGGTCAGCGACATCCGCATGCCCGGCATCGATGGCATGGAACTG 
CTCCGCCAATTGCACGAACAGGACGCCGACCTGCCGGTGATCCTGATCACCGGCCACGGCGACGTGCCGCTG 
GCGGTCCAGGCCATGCGCGGCGGCGCCTACGACTTCCTGGAAAAGCCCTTTCCCAGCGACGCCCTGCTCGAC 
AGCGTGCGCCGCGCCCTGGAGGTGCGCCGGCTGGTCCTGGAGAACCGCACCCTGCGCCTGGCCCTGGCCGAA 
CGCCACGAACTGCATGGGCGCCTGATCGGACGCTCGGCCGGCATGCAGCGCCTGCGCGAGCAGGTCGGCTCG 
CTGGCGGCGATCCAGGCCGACGTGCTGGTCCTTGGCGAAACCGGCGCCGGCAAGGAGGTGGTCGCGCGGGCC 
CTGCATGACCTGTCGAGCCGACGCGACGGACCGTTCGTCGCGATCAACGCCGGCGCTCTCGCCGAATCGGTG 
GTGGAAAGCGAACTGTTCGGCCACGAGGCCGGCGCCTTCACCGGCGCGCAGAAGCGCCGCATCGGCAAGTTC 
GAGTACGCCAATGGCGGCACCCTGTTCCTCGACGAGATCGAGAGCATGAGCCTGGACGTGCAGGTCAAGCTG 
TTGCGCCTGCTGCAGGAACGGGTAGTCGAGCGGCTCGGCTCCAACCAGCTGATCCCGCTGGATATCCGCATC 
ATCGCGGCAACCAAGGAAGACCTGCGCCAGGCCGCCGACCAGGGCCGCTTCCGCGCCGACCTCTATTACCGC 
CTCAACGTCGCCAGCTTGCGCATCCCACCGCTGCGCGAGCGCGGCGAGGACATCCCGCTGCTGTTCCGCCAT 
TTCGCCGAAGCCGGCGCCATGCGCCATGGCCTGACGCCACGCGAACTGGACGCCGGCCAGTCGGCGCGCCTG 
CTGGCCTACGACTGGCCGGGCAACGTGCGCGAATTGCAGAACGCCGCCGAGCGCTTCGCCCTGGGCCTCGGC 
CTGAGCCTGGACGACGGAGTCCTGCCCGACGCCGCCGACGAGCCGCACAACCTCAGCGCCAAGGTCGAGGCC 
TTCGAACGCTCGCTGATCGCCGCCGAGCTGGAACGCCCGCACAATTCGCTGCGTAGCGTCGCCGAGGCCCTC 
GGTATCCCGCGCAAGACCCTGCACGACAAGCTGCGCAAGCACGGCCTGCCGTTCAACACGCCTGGCGAGAAT 
CCGCCAGATGATGGCGAATGA