ViewGene
Locus Name:
GeneID:
Location:

GeneID:1041
TrivialName: PA14_55440
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_55440
PAO1 Ortholog Locus:PA0686
Sequence Length:1410
Protein Length:469
Start: 4934947
Stop: 4933538
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04075.1|AE004503_13 (AE004503) probable type II secretion system protein [Pseudomonas aeruginosa PAO1]
Identities = 467/469 (99%), Positives = 467/469 (99%)
Sequence:
ATGAGCCTGCTGCCCTACGCCTGGGCCAAGGCGCAGCGCGCCTTGCTGCGGCCGGGCGAGCATGGCGCGACC
CTGCTGGTCAGCCCGCGCACGCCCGGCTGGGCGATCAGCGAGGTGCGCCAGCGGCATGAGTTGGCCAGCCTG
GAGAGCGTCCGCGACGACGAACTCGACACCCTGCTGGCCAGCGCCTACTCCGATACCGGCAGCGCCGCGGCG
GTGGTCGGCGCGGCGGAGAGCGAGGTCGACCTCGACCGCCTGATGGACGATATCCCCGAGGTCACTGACCTG
CTCGACACCCAGGATGGCGCGCCAGTGATCCGCATGATCAACGCGCTGCTGACCCAGGCGGCGCGCGATGAG
GCCAGCGACATCCACATCGAGCCCTTCGAGACCCATTCGGTGGTGCGCTACCGCGTCGACGGCGCCCTGCGC
GACGTGGTCGCGCCGCGCAAGGCGCTGCACGCGGCGCTGGTGTCGCGGATCAAGATCATGGCGCAGCTGGAT
ATCGCCGAGAAACGCCTGCCCCAGGATGGCCGCATCGCCTTGCGGGTAGCCGGGCGgCCGATCGACATTCGC
GTCTCcaccGTGCCCACCGGCCACGGCGAACGGGTGGTGATGCGCCTGCTGGACAAGCAGGCCGGGCGCCTG
AGGCTGGAGACCCTGGGCATGGCCCCGGGCGTGCTGGCGCCGCTGGACAACCTGATCCGCCAGCCGCACGGC
ATCGTGCTGGTCACCGGGCCCACCGGCAGCGGCAAGACCACCACCCTCTACGCCGCCCTGGCGCGGCTCGAC
GCCAGCACCAGCAACATCCTCACCGTCGAGGACCCGGTGGAGTACGATCTGCCGGGGATCAGCCAGATCCAG
GTCAACGCGCGCATCGACATGACCTTCGCCGTAGCCCTGCGGGCGATCCTCCGGCAGGACCCGGACATCATC
ATGATCGGCGAGATCCGCGACCTGGAGACCGCGCAGATCGCCGTGCAGGCCTCGCTCACCGGACACCTGGTG
CTGGCCACGCTGCACACCAACGACGCGGTGTCGGCAGTGACGCGGCTGGTGGACATGGGCGTCGAGCCGTTC
CTGCTCGCCTCGTCGATGCTTGGCGTACTCGCCCAGCGCCTGGTGCGGCGCCTGTGCACGCATTGCCGGGTC
GAaGagGACGGCGGCTGGCGCGCGgTcggCTGCCcGGCCTGCAACCAGACcGGCTACAGCGGGCGCACCGGC
ATCCACGAGCTGTTCGTGATCGACGACGAGATCCGCCGCCTGGTTCACCAGGGCCGCGCCGAGCAGGATCTC
CGCGAAGCCGCCCGCGCCGCCGGCATGCGCAGCATGCGCGAGGACGGCGAGCGCTGGATCGCCAGCGGCTCC
ACCACCCTGGAGGAAATCCTCCGCGTGACCCGGGACGCCTGA
Translation:
MSLLPYAWAKAQRALLRPGEHGATLLVSPRTPGWAISEVRQRHELASLESVRDDELDTLLASAYSDTGSAAA
VVGAAESEVDLDRLMDDIPEVTDLLDTQDGAPVIRMINALLTQAARDEASDIHIEPFETHSVVRYRVDGALR
DVVAPRKALHAALVSRIKIMAQLDIAEKRLPQDGRIALRVAGRPIDIRVSTVPTGHGERVVMRLLDKQAGRL
RLETLGMAPGVLAPLDNLIRQPHGIVLVTGPTGSGKTTTLYAALARLDASTSNILTVEDPVEYDLPGISQIQ
VNARIDMTFAVALRAILRQDPDIIMIGEIRDLETAQIAVQASLTGHLVLATLHTNDAVSAVTRLVDMGVEPF
LLASSMLGVLAQRLVRRLCTHCRVEEDGGWRAVGCPACNQTGYSGRTGIHELFVIDDEIRRLVHQGRAEQDL
REAARAAGMRSMREDGERWIASGSTTLEEILRVTRDA*
AnnotationID:1050GeneID:1041
AnnotatorUID: danlee
Modification Date/Time: 2004-03-11 15:03:14
Gene Name:
Confidence Code:3
GeneProduct:probable type II secretion system protein
Cell Localization:()
Synonyms:PA0686, hxcR
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(19) Protein secretion/export apparatus
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
COG2804, PulE, Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway,
ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion]
 CD-Length = 500 residues,  96.8% aligned
 Score =  544 bits (1404), Expect = 1e-155






   
Genomic Context:






   
Comment:


















    ReferenceID:2085




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:19227




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:1041
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
1874
                           PA0686_tr
                           translation of PA0686
                           469
                           99.57
                           99.57
                           0
                           2333.0
     

     
     
64855
                           gb|AAG04075.1|AE004503_13
                           (AE004503) probable type II secretion system protein [Pseudomonas aeruginosa PAO1]
                           469
                           99.57
                           99.57
                           0
                           2333.0
     

     
     
64857
                           dbj|BAB18789.1|
                           (AB050004) GspE [Burkholderia cepacia]
                           496
                           63.30
                           75.20
                           27
                           1554.0
     

     
     
64856
                           gb|AAD05174.1|
                           (AF110185) general secretory pathway protein E [Burkholderia pseudomallei]
                           498
                           63.05
                           74.89
                           30
                           1556.0
     

     
     
64859
                           gb|AAL38651.1|
                           (AF127982) GspE [Burkholderia cepacia]
                           474
                           62.44
                           72.99
                           59
                           1498.0
     

     






      

          
GC ORFID: 44043How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA0686Glimmer Score: 

          
Start: 18960Stop: 20369

          
Length: 1410


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA0686 translation of PA0686Homolog Bit Score 903.0

          
Other Homologs:  t_PA3103 (ORF: BLASTX 495.0), t_PA0686 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAGCCTGCTGCCCTACGCCTGGGCCAAGGCGCAGCGCGCCTTGCTGCGGCCGGGCGAGCATGGCGCGACC 
CTGCTGGTCAGCCCGCGCACGCCCGGCTGGGCGATCAGCGAGGTGCGCCAGCGGCATGAGTTGGCCAGCCTG 
GAGAGCGTCCGCGACGACGAACTCGACACCCTGCTGGCCAGCGCCTACTCCGATACCGGCAGCGCCGCGGCG 
GTGGTCGGCGCGGCGGAGAGCGAGGTCGACCTCGACCGCCTGATGGACGATATCCCCGAGGTCACTGACCTG 
CTCGACACCCAGGATGGCGCGCCAGTGATCCGCATGATCAACGCGCTGCTGACCCAGGCGGCGCGCGATGAG 
GCCAGCGACATCCACATCGAGCCCTTCGAGACCCATTCGGTGGTGCGCTACCGCGTCGACGGCGCCCTGCGC 
GACGTGGTCGCGCCGCGCAAGGCGCTGCACGCGGCGCTGGTGTCGCGGATCAAGATCATGGCGCAGCTGGAT 
ATCGCCGAGAAACGCCTGCCCCAGGATGGCCGCATCGCCTTGCGGGTAGCCGGGCGgCCGATCGACATTCGC 
GTCTCcaccGTGCCCACCGGCCACGGCGAACGGGTGGTGATGCGCCTGCTGGACAAGCAGGCCGGGCGCCTG 
AGGCTGGAGACCCTGGGCATGGCCCCGGGCGTGCTGGCGCCGCTGGACAACCTGATCCGCCAGCCGCACGGC 
ATCGTGCTGGTCACCGGGCCCACCGGCAGCGGCAAGACCACCACCCTCTACGCCGCCCTGGCGCGGCTCGAC 
GCCAGCACCAGCAACATCCTCACCGTCGAGGACCCGGTGGAGTACGATCTGCCGGGGATCAGCCAGATCCAG 
GTCAACGCGCGCATCGACATGACCTTCGCCGTAGCCCTGCGGGCGATCCTCCGGCAGGACCCGGACATCATC 
ATGATCGGCGAGATCCGCGACCTGGAGACCGCGCAGATCGCCGTGCAGGCCTCGCTCACCGGACACCTGGTG 
CTGGCCACGCTGCACACCAACGACGCGGTGTCGGCAGTGACGCGGCTGGTGGACATGGGCGTCGAGCCGTTC 
CTGCTCGCCTCGTCGATGCTTGGCGTACTCGCCCAGCGCCTGGTGCGGCGCCTGTGCACGCATTGCCGGGTC 
GAaGagGACGGCGGCTGGCGCGCGgTcggCTGCCcGGCCTGCAACCAGACcGGCTACAGCGGGCGCACCGGC 
ATCCACGAGCTGTTCGTGATCGACGACGAGATCCGCCGCCTGGTTCACCAGGGCCGCGCCGAGCAGGATCTC 
CGCGAAGCCGCCCGCGCCGCCGGCATGCGCAGCATGCGCGAGGACGGCGAGCGCTGGATCGCCAGCGGCTCC 
ACCACCCTGGAGGAAATCCTCCGCGTGACCCGGGACGCCTGA