ViewGene

Locus Name:
GeneID:
Location:

GeneID:104
TrivialName: PA14_13150
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_13150
PAO1 Ortholog Locus:PA3921
Sequence Length:2721
Protein Length:906
Start: 1129901
Stop: 1132621
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG07308.1|AE004809_8 (AE004809) probable transcriptional regulator [Pseudomonas aeruginosa PAO1]
Identities = 906/906 (100%), Positives = 906/906 (100%)
Sequence:
ATGACTGACTTCTCGCGTACCTTCTCGGGCACTCCATCCGCCGTCCTGCCGACGGCCAACCGCTTTTTCCGC
CCCCCGCTGCCGTCGGCCCATGTGGCGCGCCCGCGTCTTTGCCGTCGACTGCGCGACGGACTGGACGGTCGC
CTGCTGCTGATCGCCGCGCCCGCCGGATTTGGCAAGAGTTCCCTGGCCATCGAGTTCTGCGAAAGCCTCGAC
CCGCGCTGGCAGAGCCTCTGGCTGGGACTGAGCAGCCGCGAGAGCGATCCCGGACGTTTCCTCGAACGCCTG
CTCGATGGCTTGCGACAGTACCACCCGACCCTGGGCGAAGAGGCCCTCGGCCTGCTGAAGATGCGCCAGCGC
CACCAGCCGTTCGCCTTCGAGACCTGGCTCGACGACCTGCTCGACGAACTCGCCCCCTGCCTGGACCCGCAG
CGTCCCCTGCTACTGGTGCTGGACGACTACCACCTGGCCCAGGGCGCGGTGCTCGACCGTTGCCTGCAATTC
CTCCTCAATCACCTGCCCGAGGGCCTGGTGCTGCTGGTCACCAGCCGGCAGCGGCCGGACTGGCACCTGGCG
CGCCTGCGCCTGTCGCGGCAATTGCTCGAACTCAGCGAACAGGACCTGCGCCTGACCGCCGAGGAGAGCGGG
GCGCTGATGGCCGCCAGCGGCCTCGAACTCGACGAGGACGCGCTGGACGCGCTGCTCGAGCGCAGCGAAGGC
TGGGTCGCCGGGCTGCGCCTCTGGCTGCTGGCGCGCGGCGATCCAGAGGAGCAGGTCAGTCCCGGGGTACAC
GGCGCCGACGAGCTGATCCGCGACTACCTGCTGGAGGAGGTGATCGAGCGGCAGCCGCCCGAGGTCCAGGCG
TTCCTCGCCCAGACCGCGCGCTTCGAGCGCTTCTGCGCCGAACTCTGCGATACCGTGCGCGAGGCCGGCGAC
AGCGCGGCGATCCTCGACCACCTGCAGCAGCACCAGGTCTTCCTCGTGCCGCTGGACGAAAACGGCCAGTGG
TTCCGCTACCACCACCTGTTCTCCGACCTGCTGCTGGCGCGTCCCTTGCCCGACTTCGGTCCGTCCGCCGGC
TCCCTGCACCTGCGCGCCTGCGGCTGGTTCAGCCGCCATGGCCTGCTCGACCAGGCGGTGGAGCAGGCGCTG
CGCGCCGGCCAGCCGGACGTGGCGGCGAGCCTGGTGCAGAACCTGTCGGAAGAGCAACTGCTGGCGGAGCAG
AACATCGCCACCCTGCTGCGCTGGAAGATGGACCTGCCGGACAGCCTCCTGGCGAGCACGCCGCGCCTGATC
CTGCTGTACGGCTGGGCGCTGGCGCTGGCCTGCCAGCTGGATGCCGCGGAAGAGCTGGCTGGCCAACTGGCG
CGTTTCCTGCCGGCGCCGGACGAGTCTGCGCAGCGCGACCTGCTGGCCCAGTGGCAGGCCCTGAGCGGGGTG
ATCGCGCGCGGCCGCGGCGACATCGACAAGGCCGAGGCGCACTGCCGCGAGGCCTTGCAGGACCTCGCCGGG
GAGCGCTATGGCACCCGCCTGCAATGCCTGTCGACGCTGAGCAACCTGGCGGTGACCCGTGGCGACTTCTGG
CAGGCGCGCAACTACAACCGCGACGCCCTGGAGTTCGCCCAGCGCTACGGCAACCCGCTGTTCGAGGCACTG
GTCCATTACGACCGCGCCCGCGTCCTCCAGGCGCGCGGCGAGGTGGCGCGCGCTGAGGAGGAGGTGCGCCAG
GGCCTGGAACGCCTCCAGCACCTGCCGGCGCAACGCCGCTACGCGGTGCGCGGGCGGCTCCTGCTGTACCGC
GGCTACCTGCGCAGCCTGGCGCTGCAGCCGGACGAAGCGCGCAAGTGGATCAAGCAGGGAATCGAGGAAACC
CGCAGTTGCCGGGATGTCAGCCTGGTGATCGGCTATTGCGTCCTGGCCAGCCTGGAAGGGCGCCTGGGCAAC
TACGCGGCGGCGTTCGCCCGGCTTGGCGACGTCGAGCGGCTGATGCATGCCTGGGATATCCCGCCGATCTAC
TACCTGGCGGCGATCACCCTGATCAAGTGCGAACTCTGGCTGGCCCAGGGCCAGACCGAACTGGCCGGCGTC
TGGCTACAGCGCCTGGGCGGCACCTACGGCGGGCAGGCGGCCACGCCGCCGGAATGCAGTCCGCTGCTGCCG
CTGCATGTGGAGTTGCTCCAGGCCGGCCTGGAGCGCCGCGAAGGACGCCCGGAGGAGGCCGCCCGGCGTCTG
GATCGGCTGGCCCGCTCGACGCGGGAGAACGGCGCATTGCTGCCGGCTCGCCTGGCCCTCGGCCAACTGGCC
GCGCTGCACCTGGAGCAGGGCCGCGAGCGCGAGGCGCTGGCGACCCTGCAACAAGCCATGGAGGGCGCAGTC
GGCGGAGCCTTGCTGCCGCTCCACGAATTGCTCGTGCAGCAGCCGGAATGGTTGCGCGAACAGTTGCAGCGC
TTCCCTGCCTGTCCCGGCGCCCAGCGCATGCGCGCGCTGTTGCCGGAGCCGCCCGCCGAGCCCGCGGGCAGT
GCGGGCGAGGTGCTCAGCGGGCGCGAACTGGCGGTGCTGGAGCTGATCGCCCAGGGGTTGTCCAACCAGGAG
ATCAGCGAGCGGCTGTTCATCTCGCTGCATACGGTGAAGAGCCACGCCCGCCATATCAACGACAAGCTCGGC
GTCGAGCGCCGCACCCAGGCGGTGGCGCGGGCCAAGCACATGGGGTTGTTGCGCTAG
Translation:
MTDFSRTFSGTPSAVLPTANRFFRPPLPSAHVARPRLCRRLRDGLDGRLLLIAAPAGFGKSSLAIEFCESLD
PRWQSLWLGLSSRESDPGRFLERLLDGLRQYHPTLGEEALGLLKMRQRHQPFAFETWLDDLLDELAPCLDPQ
RPLLLVLDDYHLAQGAVLDRCLQFLLNHLPEGLVLLVTSRQRPDWHLARLRLSRQLLELSEQDLRLTAEESG
ALMAASGLELDEDALDALLERSEGWVAGLRLWLLARGDPEEQVSPGVHGADELIRDYLLEEVIERQPPEVQA
FLAQTARFERFCAELCDTVREAGDSAAILDHLQQHQVFLVPLDENGQWFRYHHLFSDLLLARPLPDFGPSAG
SLHLRACGWFSRHGLLDQAVEQALRAGQPDVAASLVQNLSEEQLLAEQNIATLLRWKMDLPDSLLASTPRLI
LLYGWALALACQLDAAEELAGQLARFLPAPDESAQRDLLAQWQALSGVIARGRGDIDKAEAHCREALQDLAG
ERYGTRLQCLSTLSNLAVTRGDFWQARNYNRDALEFAQRYGNPLFEALVHYDRARVLQARGEVARAEEEVRQ
GLERLQHLPAQRRYAVRGRLLLYRGYLRSLALQPDEARKWIKQGIEETRSCRDVSLVIGYCVLASLEGRLGN
YAAAFARLGDVERLMHAWDIPPIYYLAAITLIKCELWLAQGQTELAGVWLQRLGGTYGGQAATPPECSPLLP
LHVELLQAGLERREGRPEEAARRLDRLARSTRENGALLPARLALGQLAALHLEQGREREALATLQQAMEGAV
GGALLPLHELLVQQPEWLREQLQRFPACPGAQRMRALLPEPPAEPAGSAGEVLSGRELAVLELIAQGLSNQE
ISERLFISLHTVKSHARHINDKLGVERRTQAVARAKHMGLLR*
AnnotationID:114GeneID:104
AnnotatorUID: urbach
Modification Date/Time: 2004-03-17 17:05:38
Gene Name:
Confidence Code:3
GeneProduct:putative transcriptional regulator
Cell Localization:()
Synonyms:PA3921
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(25) Transcriptional regulators
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG2909
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:
Homology:
26% identical to gb|AAC44880.1| ((U10553) AcoK [Klebsiella pneumoniae]
Structural Features:
Genomic Context:
Comment:
ReferenceID:211
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:17353
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
ReferenceID:29045
Author/Investigator(s): Peng HL, Yang YH, Deng WL, Chang HY.
Title: Identification and characterization of acoK, a regulatory gene of the Klebsiella pneumoniae acoABCD operon.
PubMed: 9045805
MedLine:
Source:
J Bacteriol. 1997 Mar;179(5):1497-504.
Reference Type:Journal
Data:
URL:http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=PubMed&cmd=Retrieve&list_uids=97197509&dopt=Citation
Homologs By Global Alignment
Gene ID:104

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
202 PA3921_tr translation of PA3921 906 99.99 99.99 0 4670.0
15056 gb|AAG07308.1|AE004809_8 (AE004809) probable transcriptional regulator [Pseudomonas aeruginosa PAO1] 906 99.99 99.99 0 4670.0
15057 gb|AAN66392.1|AE016267_1 (AE016776) transcriptional regulator, LuxR family [Pseudomonas putida KT2440] 909 65.78 76.45 7 2982.0
15058 gb|AAO54680.1| (AE016859) transcriptional regulator, LuxR family [Pseudomonas syringae pv. tomato str. DC3000] 913 63.63 74.26 10 2877.0
GC ORFID: 43106How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA3921Glimmer Score:
Start: 3824037Stop: 3821317
Length: 2721
Start Codon: ATGTruncated Start:
Stop Codon: TAGTruncated Stop:
Homolog: t_PA3921 translation of PA3921Homolog Bit Score 1803.0
Other Homologs: psyr_15may02_Scaffold3_revised_gene4329 (ORF: BLASTX 1111.0), t_PA3921 (ORF: GLIMMER)
GC ORF Sequence
ATGACTGACTTCTCGCGTACCTTCTCGGGCACTCCATCCGCCGTCCTGCCGACGGCCAACCGCTTTTTCCGC
CCCCCGCTGCCGTCGGCCCATGTGGCGCGCCCGCGTCTTTGCCGTCGACTGCGCGACGGACTGGACGGTCGC
CTGCTGCTGATCGCCGCGCCCGCCGGATTTGGCAAGAGTTCCCTGGCCATCGAGTTCTGCGAAAGCCTCGAC
CCGCGCTGGCAGAGCCTCTGGCTGGGACTGAGCAGCCGCGAGAGCGATCCCGGACGTTTCCTCGAACGCCTG
CTCGATGGCTTGCGACAGTACCACCCGACCCTGGGCGAAGAGGCCCTCGGCCTGCTGAAGATGCGCCAGCGC
CACCAGCCGTTCGCCTTCGAGACCTGGCTCGACGACCTGCTCGACGAACTCGCCCCCTGCCTGGACCCGCAG
CGTCCCCTGCTACTGGTGCTGGACGACTACCACCTGGCCCAGGGCGCGGTGCTCGACCGTTGCCTGCAATTC
CTCCTCAATCACCTGCCCGAGGGCCTGGTGCTGCTGGTCACCAGCCGGCAGCGGCCGGACTGGCACCTGGCG
CGCCTGCGCCTGTCGCGGCAATTGCTCGAACTCAGCGAACAGGACCTGCGCCTGACCGCCGAGGAGAGCGGG
GCGCTGATGGCCGCCAGCGGCCTCGAACTCGACGAGGACGCGCTGGACGCGCTGCTCGAGCGCAGCGAAGGC
TGGGTCGCCGGGCTGCGCCTCTGGCTGCTGGCGCGCGGCGATCCAGAGGAGCAGGTCAGTCCCGGGGTACAC
GGCGCCGACGAGCTGATCCGCGACTACCTGCTGGAGGAGGTGATCGAGCGGCAGCCGCCCGAGGTCCAGGCG
TTCCTCGCCCAGACCGCGCGCTTCGAGCGCTTCTGCGCCGAACTCTGCGATACCGTGCGCGAGGCCGGCGAC
AGCGCGGCGATCCTCGACCACCTGCAGCAGCACCAGGTCTTCCTCGTGCCGCTGGACGAAAACGGCCAGTGG
TTCCGCTACCACCACCTGTTCTCCGACCTGCTGCTGGCGCGTCCCTTGCCCGACTTCGGTCCGTCCGCCGGC
TCCCTGCACCTGCGCGCCTGCGGCTGGTTCAGCCGCCATGGCCTGCTCGACCAGGCGGTGGAGCAGGCGCTG
CGCGCCGGCCAGCCGGACGTGGCGGCGAGCCTGGTGCAGAACCTGTCGGAAGAGCAACTGCTGGCGGAGCAG
AACATCGCCACCCTGCTGCGCTGGAAGATGGACCTGCCGGACAGCCTCCTGGCGAGCACGCCGCGCCTGATC
CTGCTGTACGGCTGGGCGCTGGCGCTGGCCTGCCAGCTGGATGCCGCGGAAGAGCTGGCTGGCCAACTGGCG
CGTTTCCTGCCGGCGCCGGACGAGTCTGCGCAGCGCGACCTGCTGGCCCAGTGGCAGGCCCTGAGCGGGGTG
ATCGCGCGCGGCCGCGGCGACATCGACAAGGCCGAGGCGCACTGCCGCGAGGCCTTGCAGGACCTCGCCGGG
GAGCGCTATGGCACCCGCCTGCAATGCCTGTCGACGCTGAGCAACCTGGCGGTGACCCGTGGCGACTTCTGG
CAGGCGCGCAACTACAACCGCGACGCCCTGGAGTTCGCCCAGCGCTACGGCAACCCGCTGTTCGAGGCACTG
GTCCATTACGACCGCGCCCGCGTCCTCCAGGCGCGCGGCGAGGTGGCGCGCGCTGAGGAGGAGGTGCGCCAG
GGCCTGGAACGCCTCCAGCACCTGCCGGCGCAACGCCGCTACGCGGTGCGCGGGCGGCTCCTGCTGTACCGC
GGCTACCTGCGCAGCCTGGCGCTGCAGCCGGACGAAGCGCGCAAGTGGATCAAGCAGGGAATCGAGGAAACC
CGCAGTTGCCGGGATGTCAGCCTGGTGATCGGCTATTGCGTCCTGGCCAGCCTGGAAGGGCGCCTGGGCAAC
TACGCGGCGGCGTTCGCCCGGCTTGGCGACGTCGAGCGGCTGATGCATGCCTGGGATATCCCGCCGATCTAC
TACCTGGCGGCGATCACCCTGATCAAGTGCGAACTCTGGCTGGCCCAGGGCCAGACCGAACTGGCCGGCGTC
TGGCTACAGCGCCTGGGCGGCACCTACGGCGGGCAGGCGGCCACGCCGCCGGAATGCAGTCCGCTGCTGCCG
CTGCATGTGGAGTTGCTCCAGGCCGGCCTGGAGCGCCGCGAAGGACGCCCGGAGGAGGCCGCCCGGCGTCTG
GATCGGCTGGCCCGCTCGACGCGGGAGAACGGCGCATTGCTGCCGGCTCGCCTGGCCCTCGGCCAACTGGCC
GCGCTGCACCTGGAGCAGGGCCGCGAGCGCGAGGCGCTGGCGACCCTGCAACAAGCCATGGAGGGCGCAGTC
GGCGGAGCCTTGCTGCCGCTCCACGAATTGCTCGTGCAGCAGCCGGAATGGTTGCGCGAACAGTTGCAGCGC
TTCCCTGCCTGTCCCGGCGCCCAGCGCATGCGCGCGCTGTTGCCGGAGCCGCCCGCCGAGCCCGCGGGCAGT
GCGGGCGAGGTGCTCAGCGGGCGCGAACTGGCGGTGCTGGAGCTGATCGCCCAGGGGTTGTCCAACCAGGAG
ATCAGCGAGCGGCTGTTCATCTCGCTGCATACGGTGAAGAGCCACGCCCGCCATATCAACGACAAGCTCGGC
GTCGAGCGCCGCACCCAGGCGGTGGCGCGGGCCAAGCACATGGGGTTGTTGCGCTAG