ViewGene

Locus Name:
GeneID:
Location:

GeneID:1039
TrivialName: PA14_15720
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_15720
PAO1 Ortholog Locus:PA3764
Sequence Length:1356
Protein Length:451
Start: 1338163
Stop: 1336808
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG07151.1|AE004795_3 (AE004795) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 451/452 (99%), Positives = 451/452 (99%), Gaps = 1/452 (0%)
Sequence:
GTGCAGAAGGAGGGCGTACTGCGCGTGATCACCCGCAACAGCCCGGCCACCTACTTCCAGGACCGCAACGGC
GAAACCGGCTTCGAATACGAACTGGCCAAGCGCTTCGCCGAGCGTCTCGGCGTCGAGCTGAAGATCGAGACC
GCCGACAACCTCGACGACCTCTATGCCCAGCTTTCCCGCGAGGGCGGCCCGGCGCTCGCCGCGGCCGGCCTG
ACCCCGGGACGCGAAGACGACGCCAGCGTGCGCTACTCGCACACCTACCTCGACGTCACCCCGCAGATAATC
TACCGCAACGGCCAGCAGCGCCCGACCCGCCCGGAAGACCTGGTCGGCAAGCGCATCATGGTGCTCAAGGGC
AGCAGCCACGCGGAGCAGCTCGCCGAGCTGAAGAAGCAGTATCCCGAACTGAAGTACGAAGAATCCGATGCT
GTCGAAGTGGTCGACCTGTTGCGCATGGTCGACGTCGGCGACATCGACCTGACCCTGGTCGACTCCAACGAA
CTGGCGATGAACCAGGTGTACTTCCCCAACGTCCGCGTCGCCTTCGACTTCGGCGAAGCCCGCGGGCTGGCC
TGGGCCTTGCCGGGGGGCGACGACAGCCTGATGAACGAGGTCAACGCGTTCCTCGACCAGGCCAAGAAGGAA
GGGCTGCTGCAACGCCTGAAGGACCGTTACTACGGGCATGTCGACGTACTCGGCTACGTCGGCGCCTACACC
TTCGCCCAGCACCTGCAGCAACGCCTGCCGCGCTACGAAAGCCACTTCAAGCAGAGCGGCAAGCAGTTGGAT
ACCGACTGGCGCCTGCTCGCCGCCATCGGCTACCAGGAATCGCTGTGGCAGCCCGGCGCCACCTCCAAGACC
GGCGTGCGCGGCCTGATGATGCTGACCAACCGCACCGCCCAGGCGATGGGGGTGTCCAACCGGCTCGACCCG
AAGCAGAGCATCCAGGGCGGCAGCAAGTATTTCGTGCAGATCCGCAGCGAACTGCCCGAGAGCATCAAGGAA
CCGGACCGCAGCTGGTTCGCCCTGGCCGCCTACAACATCGGCGGCGCGCACCTGGAAGACGCGCGCAAGATG
GCCGAGAAGGAAGGCCTCAACCCGAACAAGTGGCTGGACGTGAAGAAGATGCTGCCGCGCCTGGCGCAGAAG
CAGTGGTACGCCAAGACCCGCTACGGCTATGCGCGCGGCGGCGAGACCGTGCACTTCGTACAGAACGTGCGG
CGCTACTACGACATCCTCACCTGGGTGACCCAGCCGCAGATGGAAGGCAGCCAGATCGCCGAGAGCGGGTTG
CACCTGCCCGGCGTGAACAAGACGCGCCCGGAAGAAGACAGCGGCGACGAGAAACTCTAG
Translation:
MQKEGVLRVITRNSPATYFQDRNGETGFEYELAKRFAERLGVELKIETADNLDDLYAQLSREGGPALAAAGL
TPGREDDASVRYSHTYLDVTPQIIYRNGQQRPTRPEDLVGKRIMVLKGSSHAEQLAELKKQYPELKYEESDA
VEVVDLLRMVDVGDIDLTLVDSNELAMNQVYFPNVRVAFDFGEARGLAWALPGGDDSLMNEVNAFLDQAKKE
GLLQRLKDRYYGHVDVLGYVGAYTFAQHLQQRLPRYESHFKQSGKQLDTDWRLLAAIGYQESLWQPGATSKT
GVRGLMMLTNRTAQAMGVSNRLDPKQSIQGGSKYFVQIRSELPESIKEPDRSWFALAAYNIGGAHLEDARKM
AEKEGLNPNKWLDVKKMLPRLAQKQWYAKTRYGYARGGETVHFVQNVRRYYDILTWVTQPQMEGSQIAESGL
HLPGVNKTRPEEDSGDEKL*
AnnotationID:1048GeneID:1039
AnnotatorUID: diggins
Modification Date/Time: 2005-04-22 12:12:27
Gene Name:
Confidence Code:3
GeneProduct:putative periplasmic binding transport protein
Cell Localization:()
Synonyms:yfhD
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(27) Transport of small molecules
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG4623,smart00062
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:
Homology:
>gb|AAN66661.1|AE016294_3 (AE016777) periplasmic binding domain/transglycosylase SLT domain
           fusion protein [Pseudomonas putida KT2440]
          Length = 449

 Score =  701 bits (1809), Expect = 0.0
 Identities = 341/447 (76%), Positives = 385/447 (86%), Gaps = 2/447 (0%)

>gb|AAM84882.1|AE013733_3 (AE013733) putative periplasmic binding transport protein [Yersinia
           pestis KIM]
          Length = 517

 Score =  321 bits (822), Expect = 7e-87
 Identities = 179/412 (43%), Positives = 248/412 (60%), Gaps = 6/412 (1%)
Structural Features:
COG4623, Predicted soluble lytic transglycosylase fused to 
an ABC-type 
amino acid-binding protein 
CD-Length = 473 residues,  95.6% aligned
Score =  603 bits (1557), Expect = 2e-173
Identities = 220/455 (48%), Positives = 295/455 (64%), Gaps = 7/455 (1%)

smart00062, PBPb, Bacterial periplasmic substrate-binding 
proteins
CD-Length = 222 residues,  99.5% aligned
Score =  113 bits (284), Expect = 9e-26
Identities = 58/229 (25%), Positives = 108/229 (47%), Gaps = 13/229 (5%)
Genomic Context:
Comment:
ReferenceID:14273
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:19223
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
ReferenceID:31793
Author/Investigator(s):
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:Misc (text/plain)
Data:1039_cdd.html
URL:
Homologs By Global Alignment
Gene ID:1039

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
1872 PA3764_tr translation of PA3764 452 99.77 99.77 1 2338.0
64804 gb|AAG07151.1|AE004795_3 (AE004795) conserved hypothetical protein [Pseudomonas aeruginosa PAO1] 452 99.55 99.77 1 2335.0
64805 gb|AAN66661.1|AE016294_3 (AE016777) periplasmic binding domain/transglycosylase SLT domain fusion protein [Pseudomonas putida KT2440] 452 75.22 85.17 4 1806.0
64806 gb|AAO54979.1| (AE016861) periplasmic binding domain/transglycosylase SLT domain fusion protein [Pseudomonas syringae pv. tomato str. DC3000] 461 73.10 83.51 15 1796.0
64807 gb|AAD24214.1| (AF086638) unknown [Pseudomonas putida GB-1] 488 69.26 78.48 40 1784.0
GC ORFID: 44041How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA3764Glimmer Score:
Start: 3615774Stop: 3617129
Length: 1356
Start Codon: GTGTruncated Start:
Stop Codon: TAGTruncated Stop:
Homolog: t_PA3764 translation of PA3764Homolog Bit Score 904.0
Other Homologs: t_PA3764 (ORF: GLIMMER)
GC ORF Sequence
GTGCAGAAGGAGGGCGTACTGCGCGTGATCACCCGCAACAGCCCGGCCACCTACTTCCAGGACCGCAACGGC
GAAACCGGCTTCGAATACGAACTGGCCAAGCGCTTCGCCGAGCGTCTCGGCGTCGAGCTGAAGATCGAGACC
GCCGACAACCTCGACGACCTCTATGCCCAGCTTTCCCGCGAGGGCGGCCCGGCGCTCGCCGCGGCCGGCCTG
ACCCCGGGACGCGAAGACGACGCCAGCGTGCGCTACTCGCACACCTACCTCGACGTCACCCCGCAGATAATC
TACCGCAACGGCCAGCAGCGCCCGACCCGCCCGGAAGACCTGGTCGGCAAGCGCATCATGGTGCTCAAGGGC
AGCAGCCACGCGGAGCAGCTCGCCGAGCTGAAGAAGCAGTATCCCGAACTGAAGTACGAAGAATCCGATGCT
GTCGAAGTGGTCGACCTGTTGCGCATGGTCGACGTCGGCGACATCGACCTGACCCTGGTCGACTCCAACGAA
CTGGCGATGAACCAGGTGTACTTCCCCAACGTCCGCGTCGCCTTCGACTTCGGCGAAGCCCGCGGGCTGGCC
TGGGCCTTGCCGGGGGGCGACGACAGCCTGATGAACGAGGTCAACGCGTTCCTCGACCAGGCCAAGAAGGAA
GGGCTGCTGCAACGCCTGAAGGACCGTTACTACGGGCATGTCGACGTACTCGGCTACGTCGGCGCCTACACC
TTCGCCCAGCACCTGCAGCAACGCCTGCCGCGCTACGAAAGCCACTTCAAGCAGAGCGGCAAGCAGTTGGAT
ACCGACTGGCGCCTGCTCGCCGCCATCGGCTACCAGGAATCGCTGTGGCAGCCCGGCGCCACCTCCAAGACC
GGCGTGCGCGGCCTGATGATGCTGACCAACCGCACCGCCCAGGCGATGGGGGTGTCCAACCGGCTCGACCCG
AAGCAGAGCATCCAGGGCGGCAGCAAGTATTTCGTGCAGATCCGCAGCGAACTGCCCGAGAGCATCAAGGAA
CCGGACCGCAGCTGGTTCGCCCTGGCCGCCTACAACATCGGCGGCGCGCACCTGGAAGACGCGCGCAAGATG
GCCGAGAAGGAAGGCCTCAACCCGAACAAGTGGCTGGACGTGAAGAAGATGCTGCCGCGCCTGGCGCAGAAG
CAGTGGTACGCCAAGACCCGCTACGGCTATGCGCGCGGCGGCGAGACCGTGCACTTCGTACAGAACGTGCGG
CGCTACTACGACATCCTCACCTGGGTGACCCAGCCGCAGATGGAAGGCAGCCAGATCGCCGAGAGCGGGTTG
CACCTGCCCGGCGTGAACAAGACGCGCCCGGAAGAAGACAGCGGCGACGAGAAACTCTAG