ViewGene
Locus Name:
GeneID:
Location:

GeneID:1037
TrivialName: PA14_02070
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_02070
PAO1 Ortholog Locus:PA0166
Sequence Length:1407
Protein Length:468
Start: 189058
Stop: 190464
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG03556.1|AE004454_8 (AE004454) probable transporter [Pseudomonas aeruginosa PAO1]
Identities = 467/468 (99%), Positives = 468/468 (100%)
Sequence:
ATGCATAGCGAAGACCAACGCCCCAACGACCTCATCTACGGCCTCGACGACCGGCCGCGCCCGCTTCCCGCC
TTCCTTGCCGCGCTACAGCACGTGCTGGCCAGCTTCGTCGGCATCGTCACTCCGCCGCTGGTGATCGGCTCG
CTGCTCGGCCTCGGCGAGCACCTGCCGTACCTGATCAGCATGGCGCTGATGGTTTCCGGCGCCGGCACCCTG
ATCCAGGCGCGCCGGCCGTTCGGCATCGGCGCCGGGATGATCTGCCTGCAAGGCACCAGCTTCGCCTTCCTC
GGCGCCGTGCTGGCCGCCGGGATGCTGGTGAAGCAGCGCGGCGGCGGTCCCGAGGAGATCCTCGCGATGATC
TTCGGCGTGTGCTTCTTCGGCGCCTTCGTGCAGATCGTCCTCAGTCGGTTCCTCGGCCATCTTCGCCGGGTG
ATCACGCCGCTGGTCACCGGCATCGTCATCACCCTGATCGGCGTCAGCCTGATCAAGGTCGGCATCACCGAC
CTCGGCGGCGGAGCCGGGGCCACGGACTTCGGCGCACCGGCCAATCTCGCGCTGGGCGCGCTGGTGCTGCTG
AGCATCGTCCTGCTGAACCGCTCGCGCCTGCCCTGGCTGCGCCTGGCCGCCATCGTCATCGGCCTGGCGCTG
GGTACCCTGGCGGCCTGGGCGACCGGCCTGTTCGTTCCGCGGGCGTTGCCCGAGCTGCCGCTGGTCAGCCTG
CCGCAGCCGTTCCGCTTCGGCTTCGCCTTCGACTGGATGGCCTTCCTGCCGGTGGCGCTGATCTACCTGATC
AGCAGCATCGAGACGGTCGGCGACCTGACCGCCAACTGCATGCTCTCGCGGCAGCCCCTGGAGGGGCCGGCG
TATCTGCAGCGGTTGCGCGGCGGAGTGCTCGGCGACGGCGTCAGTTGCCTGCTGGCAGCCACCTTCAGCGCC
TTCCCGAACACCACCTTCGCGCAGAACAACGGGGTGATCCAGCTCACCGGGGTGGCCAGCCGGCACGTCGGG
ATCTATATCGGCGGCGTGTTGCTGGCGCTCGGCCTGTTCCCCTGGATCGGCGCGATCCTCCAGCAGATCCCC
AAGCCGGTGCTCGGCGGCGCCACCCTGGTGATGTTCGGCAGCGTCGCCGCCGCCGGCATCCGCATTCTCGGC
CAGACCGCGATGGACCGCCGCAGCGTGCTGATCATCGCCGCCTCGTTCGGCGTCGGCCTCGGCGTGGCCGCG
CAGCCGACCCTGCTCGACCAGATGCCGGCGGTGGTGAAGACCCTGTTCGACTCGGCGATCACCAGCGGCGGC
ATCACCGCCATCCTGCTCAACCTGCTGCTGCCCGAGGAGCGCGTTGCCGAAGCGGCGCAGGCCAGCGCGAAG
GGCGGCGCCCTGGCGCGCTGGCGCAAGCCGCTGGGTTGA
Translation:
MHSEDQRPNDLIYGLDDRPRPLPAFLAALQHVLASFVGIVTPPLVIGSLLGLGEHLPYLISMALMVSGAGTL
IQARRPFGIGAGMICLQGTSFAFLGAVLAAGMLVKQRGGGPEEILAMIFGVCFFGAFVQIVLSRFLGHLRRV
ITPLVTGIVITLIGVSLIKVGITDLGGGAGATDFGAPANLALGALVLLSIVLLNRSRLPWLRLAAIVIGLAL
GTLAAWATGLFVPRALPELPLVSLPQPFRFGFAFDWMAFLPVALIYLISSIETVGDLTANCMLSRQPLEGPA
YLQRLRGGVLGDGVSCLLAATFSAFPNTTFAQNNGVIQLTGVASRHVGIYIGGVLLALGLFPWIGAILQQIP
KPVLGGATLVMFGSVAAAGIRILGQTAMDRRSVLIIAASFGVGLGVAAQPTLLDQMPAVVKTLFDSAITSGG
ITAILLNLLLPEERVAEAAQASAKGGALARWRKPLG*
AnnotationID:1046GeneID:1037
AnnotatorUID: diggins
Modification Date/Time: 2005-03-23 07:07:56
Gene Name:
Confidence Code:3
GeneProduct:putative xanthine/uracil permease
Cell Localization:()
Synonyms:PA0166
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(18) Nucleotide biosynthesis and metabolism
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG2233,pfam00860
Secondary Functional Category(ies):transport of small molecules
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAO54314.1| (AE016858) xanthine/uracil permease family protein [Pseudomonas
           syringae pv. tomato str. DC3000]
          Length = 465

 Score =  699 bits (1805), Expect = 0.0
 Identities = 355/467 (76%), Positives = 403/467 (86%), Gaps = 6/467 (1%)

>dbj|BAC58419.1| (AP005073) xanthine/uracil permease family protein [Vibrio
           parahaemolyticus]
          Length = 470

 Score =  436 bits (1120), Expect = e-121
 Identities = 219/448 (48%), Positives = 323/448 (72%), Gaps = 6/448 (1%)

>gb|AAM83701.1|AE013611_2 (AE013611) putative transport protein, symporter [Yersinia pestis
           KIM]
          Length = 478

 Score =  424 bits (1090), Expect = e-118
 Identities = 218/446 (48%), Positives = 317/446 (71%), Gaps = 9/446 (2%)






 
Structural Features:
COG2233, UraA, Xanthine/uracil permeases 
[Nucleotide transport and metabolism]
CD-Length = 451 residues,  98.4% aligned
Score =  343 bits (881), Expect = 3e-95
Identities = 189/454 (41%), Positives = 264/454 (58%), Gaps = 17/454 (3%)

pfam00860, Xan_ur_permease, Permease family. 
CD-Length = 389 residues,  99.0% aligned
Score =  215 bits (548), Expect = 1e-56
Identities = 143/396 (36%), Positives = 204/396 (51%), Gaps = 20/396 (5%)






   
Genomic Context:






   
Comment:


















    ReferenceID:2077




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:19219




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:33537




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:1037_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:1037
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
1862
                           PA0166_tr
                           translation of PA0166
                           468
                           99.78
                           99.99
                           0
                           2339.0
     

     
     
64450
                           gb|AAG03556.1|AE004454_8
                           (AE004454) probable transporter [Pseudomonas aeruginosa PAO1]
                           468
                           99.78
                           99.99
                           0
                           2339.0
     

     
     
64451
                           gb|AAO54314.1|
                           (AE016858) xanthine/uracil permease family protein [Pseudomonas syringae pv. tomato str. DC3000]
                           472
                           75.42
                           85.80
                           11
                           1809.0
     

     
     
64452
                           gb|AAO09359.1|AE016799_257
                           (AE016799) Xanthine/uracil permease protein [Vibrio vulnificus CMCP6]
                           475
                           48.21
                           69.47
                           15
                           1139.0
     

     
     
64453
                           dbj|BAC93002.1|
                           (AP005331) xanthine/uracil permease family protein [Vibrio vulnificus YJ016]
                           475
                           48.21
                           69.47
                           15
                           1140.0
     

     






      

          
GC ORFID: 44039How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA0166Glimmer Score: 

          
Start: 5990397Stop: 5991803

          
Length: 1407


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA0166 translation of PA0166Homolog Bit Score 905.0

          
Other Homologs:  psyr_15may02_Scaffold2_revised_gene3588 (ORF: BLASTX 692.0), t_PA0352 (ORF: BLASTX 414.0), t_PA0166 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGCATAGCGAAGACCAACGCCCCAACGACCTCATCTACGGCCTCGACGACCGGCCGCGCCCGCTTCCCGCC 
TTCCTTGCCGCGCTACAGCACGTGCTGGCCAGCTTCGTCGGCATCGTCACTCCGCCGCTGGTGATCGGCTCG 
CTGCTCGGCCTCGGCGAGCACCTGCCGTACCTGATCAGCATGGCGCTGATGGTTTCCGGCGCCGGCACCCTG 
ATCCAGGCGCGCCGGCCGTTCGGCATCGGCGCCGGGATGATCTGCCTGCAAGGCACCAGCTTCGCCTTCCTC 
GGCGCCGTGCTGGCCGCCGGGATGCTGGTGAAGCAGCGCGGCGGCGGTCCCGAGGAGATCCTCGCGATGATC 
TTCGGCGTGTGCTTCTTCGGCGCCTTCGTGCAGATCGTCCTCAGTCGGTTCCTCGGCCATCTTCGCCGGGTG 
ATCACGCCGCTGGTCACCGGCATCGTCATCACCCTGATCGGCGTCAGCCTGATCAAGGTCGGCATCACCGAC 
CTCGGCGGCGGAGCCGGGGCCACGGACTTCGGCGCACCGGCCAATCTCGCGCTGGGCGCGCTGGTGCTGCTG 
AGCATCGTCCTGCTGAACCGCTCGCGCCTGCCCTGGCTGCGCCTGGCCGCCATCGTCATCGGCCTGGCGCTG 
GGTACCCTGGCGGCCTGGGCGACCGGCCTGTTCGTTCCGCGGGCGTTGCCCGAGCTGCCGCTGGTCAGCCTG 
CCGCAGCCGTTCCGCTTCGGCTTCGCCTTCGACTGGATGGCCTTCCTGCCGGTGGCGCTGATCTACCTGATC 
AGCAGCATCGAGACGGTCGGCGACCTGACCGCCAACTGCATGCTCTCGCGGCAGCCCCTGGAGGGGCCGGCG 
TATCTGCAGCGGTTGCGCGGCGGAGTGCTCGGCGACGGCGTCAGTTGCCTGCTGGCAGCCACCTTCAGCGCC 
TTCCCGAACACCACCTTCGCGCAGAACAACGGGGTGATCCAGCTCACCGGGGTGGCCAGCCGGCACGTCGGG 
ATCTATATCGGCGGCGTGTTGCTGGCGCTCGGCCTGTTCCCCTGGATCGGCGCGATCCTCCAGCAGATCCCC 
AAGCCGGTGCTCGGCGGCGCCACCCTGGTGATGTTCGGCAGCGTCGCCGCCGCCGGCATCCGCATTCTCGGC 
CAGACCGCGATGGACCGCCGCAGCGTGCTGATCATCGCCGCCTCGTTCGGCGTCGGCCTCGGCGTGGCCGCG 
CAGCCGACCCTGCTCGACCAGATGCCGGCGGTGGTGAAGACCCTGTTCGACTCGGCGATCACCAGCGGCGGC 
ATCACCGCCATCCTGCTCAACCTGCTGCTGCCCGAGGAGCGCGTTGCCGAAGCGGCGCAGGCCAGCGCGAAG 
GGCGGCGCCCTGGCGCGCTGGCGCAAGCCGCTGGGTTGA