ViewGene
Locus Name:
GeneID:
Location:

GeneID:1035
TrivialName: PA14_72870
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_72870
PAO1 Ortholog Locus:PA5523
Sequence Length:1353
Protein Length:450
Start: 6490389
Stop: 6489037
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG08908.1|AE004964_11 (AE004964) probable aminotransferase [Pseudomonas aeruginosa PAO1]
Identities = 444/450 (98%), Positives = 445/450 (98%)
Sequence:
ATGGCCCGCGAGCAGCAACGTTTCCTTGCGCAAAATCCACAGTCCGTCGCGCTCGCCGAGCGAGCCCGGCGT
GCGTTGTTCGACGGCGTGCCGATGCACTGGATGAGCGATTGGTCGACACCCTGTCCGCTGTTCGTGGAGCGT
GCCCACGGCGCGCGTTTCCATGATGTGGATGGCCACGTCTACGTGGACTTCTGCCTGGGCGACACCGGCAGC
ATGTTCGGTCATTCTCCGGCGCCGATCGCCCGGGCACTCGCCGAGCAGGGCGCGAACGGCCTGACCACCATG
CTTCCGGGGGAGGATGCCATCGTCGCAGGCGAGCTGCTGGCGCAGCGCTTCGGCCTGCCGTTCTGGCAGGTA
GCGACCACCGCTACCGACGCCAACCGCTTCGTCCTGCGCTGGGCGCGTGCGATCACCGGTCGCAAGGTGGTG
CTGGTATTCGACGGTTGCTACCACGGCACGGTCGACGACACCCTGGTTCGCTGCCGCGACGGCCGCACCGTG
CATCGCTCCGGCCTGCTCGGCCAGGCCCACGACCTCACCCAGTTCAGCCGCGCGGTGCCGTTCAACGACCTC
CAGGCCCTGGAGCAGGCGCTGGCCAGCGAAGACGTGGCCGCCGTGCTCTGCGAGCCGGCGATGACCAACATC
GGCATGGTCCTGCCGCAACCCGGCTTCCACCAGAAGCTGCGCGAGCTGACCCGTCGTCACGGCACGCTGCTG
ATCATCGACGAGACCCACACCATCTCCACAGGTCCTGGCGGCTGTACCCGCGCCTGGAAACTCGAGCCGGAC
TTCATCACCCTCGGCAAGCCGATCGCCGGCGGCGTACCGTGCTCGGTGTATGGTTGCAGCGCGGCGATGGCC
AGCGCCATGCAACTGGCCAGGGCACGTGCCAGCGAGCAGAGCGAAGGCCACGGCCACAGCGGCATGGGTACC
ACGCTGTCGGCCAACGCCCTGGCGATGCGCTGTATGCGCGCCAACCTGGAAGAGGTGATGACCGATGCCGCC
TACGCCCACATGCTGCCCCTGGCGGCGCGTCTGGCCGAGGGCTTCCGCAGGATTATCCACAAGCACGGCCTG
GCCTGGTCGGTGACCGAGCTCGGTGCGCGCAGCGAGTTCCAGTTCTGCCCGCAATCCCCACGCGACGGCGCG
GCCGCCGAGGCGGCGTTCCACGACAGCCTGCAGATGGCCTTGCACCTGTATCTGATCAACCGCGGCATCCTC
ATCACGCCGTTCCACAACATGACCCTGTGTTGCCCGGACACTCGCGAAGAAGACGTCGACCGCCTGCTCTCC
AGCCTCGACGAGGCGCTCGGCGAGCTGCTCGCCATACCCGGCGCGCGGGAGGCCTGA
Translation:
MAREQQRFLAQNPQSVALAERARRALFDGVPMHWMSDWSTPCPLFVERAHGARFHDVDGHVYVDFCLGDTGS
MFGHSPAPIARALAEQGANGLTTMLPGEDAIVAGELLAQRFGLPFWQVATTATDANRFVLRWARAITGRKVV
LVFDGCYHGTVDDTLVRCRDGRTVHRSGLLGQAHDLTQFSRAVPFNDLQALEQALASEDVAAVLCEPAMTNI
GMVLPQPGFHQKLRELTRRHGTLLIIDETHTISTGPGGCTRAWKLEPDFITLGKPIAGGVPCSVYGCSAAMA
SAMQLARARASEQSEGHGHSGMGTTLSANALAMRCMRANLEEVMTDAAYAHMLPLAARLAEGFRRIIHKHGL
AWSVTELGARSEFQFCPQSPRDGAAAEAAFHDSLQMALHLYLINRGILITPFHNMTLCCPDTREEDVDRLLS
SLDEALGELLAIPGAREA*
AnnotationID:1044GeneID:1035
AnnotatorUID: diggins
Modification Date/Time: 2005-03-21 10:10:09
Gene Name:
Confidence Code:3
GeneProduct:putative glutamate-1-semialdehyde aminotransferase
Cell Localization:()
Synonyms:PA5523
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(4) Biosynthesis of cofactors, prosthetic groups and carriers
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG0001
Secondary Functional Category(ies):putative enzyme
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAK25101.1| (AE005977) glutamate-1-semialdehyde 2,1-aminomutase [Caulobacter
           crescentus CB15]
          Length = 466

 Score =  469 bits (1207), Expect = e-131
 Identities = 242/443 (54%), Positives = 298/443 (67%), Gaps = 8/443 (1%)

>dbj|BAB51647.1| (AP003005) probable aminotransferase [Mesorhizobium loti]
          Length = 460

 Score =  463 bits (1192), Expect = e-130
 Identities = 241/440 (54%), Positives = 291/440 (66%), Gaps = 5/440 (1%)






 
Structural Features:
COG0001, HemL, Glutamate-1-semialdehyde aminotransferase 
[Coenzyme metabolism]
CD-Length = 432 residues,  99.5% aligned
Score =  428 bits (1102), Expect = 6e-121
Identities = 158/442 (35%), Positives = 222/442 (50%), Gaps = 20/442 (4%)







   
Genomic Context:






   
Comment:


















    ReferenceID:2073




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:19215




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:33311




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:1035_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:1035
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
1858
                           PA5523_tr
                           translation of PA5523
                           450
                           98.66
                           98.88
                           0
                           2338.0
     

     
     
64417
                           gb|AAG08908.1|AE004964_11
                           (AE004964) probable aminotransferase [Pseudomonas aeruginosa PAO1]
                           450
                           98.66
                           98.88
                           0
                           2338.0
     

     
     
64418
                           gb|AAQ60487.1|
                           (AE016920) probable glutamate-1-semialdehyde aminotransferase [Chromobacterium violaceum ATCC 12472]
                           465
                           54.40
                           67.09
                           27
                           1301.0
     

     
     
64420
                           dbj|BAB51647.1|
                           (AP003005) probable aminotransferase [Mesorhizobium loti]
                           472
                           51.27
                           62.07
                           34
                           1193.0
     

     
     
64419
                           gb|AAK25101.1|
                           (AE005977) glutamate-1-semialdehyde 2,1-aminomutase [Caulobacter crescentus CB15]
                           482
                           50.41
                           62.86
                           48
                           1215.0
     

     






      

          
GC ORFID: 44037How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA5523Glimmer Score: 

          
Start: 5754078Stop: 5752726

          
Length: 1353


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA5523 translation of PA5523Homolog Bit Score 905.0

          
Other Homologs:  t_PA4088 (ORF: BLASTX 428.0), t_PA5523 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGGCCCGCGAGCAGCAACGTTTCCTTGCGCAAAATCCACAGTCCGTCGCGCTCGCCGAGCGAGCCCGGCGT 
GCGTTGTTCGACGGCGTGCCGATGCACTGGATGAGCGATTGGTCGACACCCTGTCCGCTGTTCGTGGAGCGT 
GCCCACGGCGCGCGTTTCCATGATGTGGATGGCCACGTCTACGTGGACTTCTGCCTGGGCGACACCGGCAGC 
ATGTTCGGTCATTCTCCGGCGCCGATCGCCCGGGCACTCGCCGAGCAGGGCGCGAACGGCCTGACCACCATG 
CTTCCGGGGGAGGATGCCATCGTCGCAGGCGAGCTGCTGGCGCAGCGCTTCGGCCTGCCGTTCTGGCAGGTA 
GCGACCACCGCTACCGACGCCAACCGCTTCGTCCTGCGCTGGGCGCGTGCGATCACCGGTCGCAAGGTGGTG 
CTGGTATTCGACGGTTGCTACCACGGCACGGTCGACGACACCCTGGTTCGCTGCCGCGACGGCCGCACCGTG 
CATCGCTCCGGCCTGCTCGGCCAGGCCCACGACCTCACCCAGTTCAGCCGCGCGGTGCCGTTCAACGACCTC 
CAGGCCCTGGAGCAGGCGCTGGCCAGCGAAGACGTGGCCGCCGTGCTCTGCGAGCCGGCGATGACCAACATC 
GGCATGGTCCTGCCGCAACCCGGCTTCCACCAGAAGCTGCGCGAGCTGACCCGTCGTCACGGCACGCTGCTG 
ATCATCGACGAGACCCACACCATCTCCACAGGTCCTGGCGGCTGTACCCGCGCCTGGAAACTCGAGCCGGAC 
TTCATCACCCTCGGCAAGCCGATCGCCGGCGGCGTACCGTGCTCGGTGTATGGTTGCAGCGCGGCGATGGCC 
AGCGCCATGCAACTGGCCAGGGCACGTGCCAGCGAGCAGAGCGAAGGCCACGGCCACAGCGGCATGGGTACC 
ACGCTGTCGGCCAACGCCCTGGCGATGCGCTGTATGCGCGCCAACCTGGAAGAGGTGATGACCGATGCCGCC 
TACGCCCACATGCTGCCCCTGGCGGCGCGTCTGGCCGAGGGCTTCCGCAGGATTATCCACAAGCACGGCCTG 
GCCTGGTCGGTGACCGAGCTCGGTGCGCGCAGCGAGTTCCAGTTCTGCCCGCAATCCCCACGCGACGGCGCG 
GCCGCCGAGGCGGCGTTCCACGACAGCCTGCAGATGGCCTTGCACCTGTATCTGATCAACCGCGGCATCCTC 
ATCACGCCGTTCCACAACATGACCCTGTGTTGCCCGGACACTCGCGAAGAAGACGTCGACCGCCTGCTCTCC 
AGCCTCGACGAGGCGCTCGGCGAGCTGCTCGCCATACCCGGCGCGCGGGAGGCCTGA