ViewGene
Locus Name:
GeneID:
Location:

GeneID:1034
TrivialName: PA14_35670
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_35670
PAO1 Ortholog Locus:PA2237
Sequence Length:1329
Protein Length:442
Start: 3171382
Stop: 3170054
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG05625.1|AE004649_16 (AE004649) probable glycosyl hydrolase [Pseudomonas aeruginosa PAO1]
Identities = 442/442 (100%), Positives = 442/442 (100%)
Sequence:
ATGGCACGTAAGGGACTCTATCTGGGCGGCAGCGCGCTGCTGCTCGCCGTGGTACTGCTGCTGGTGTTCTGG
GGGCGTCCCGCGGACGCCGAGATCCAGGTACTGAAGGCGCCTCGCGCGGTGGTCTGGAAAGACTTCCTCGGG
GTCAACGCGCAGTTCCTCTGGTTCAGCCCGGAGCGCTACAACAAGCAGATCGACCGCCTGCAGGACCTGGGG
CTGGAGTGGGTGCGCCTGGACCTGCACTGGGACCGCCTGGAAACCGCCGAAGACCAGTACCAGCTGGCCTCC
CTCGACCAGTTGGTCAAGGATCTCGAGGCGCGCCAGCTGAAGTCGGTGTTCTACCTGGTCGGATCGGCCCGC
TTCATCACCACCGCGCCGTTCTATTCGCCCTTCCAGGACCAGTATCCGCCGCGCGACCCGGAAGTCTTCGCC
CGGCGCATGGCGATGCTCTCGCAGCGCTACCCGAGCGTGGCCGCCTGGCAGGTATGGAACGAGCCCAACCTG
ATCGGCTTCTGGCGGCCCAAGGCCGATCCGGAAGGCTACGCCAAGCTGCTCCAGGCCAGCACCATCGCCCTG
CGCATGGTCGACCCGGAGAAGCCGGTGGTTTCCGCCGGCATGGCCTTCTTCAGCGAGATGCCCGACGGCCGC
ACCATGTTCGATGCCCTCGGCCACCTGGGCGTGGAGAGCCTCGGCACCATCGCCACCTACCACCCCTATACC
CAGTTGCCGGAAGGCAACTACCCGTGGAACCTGGACTTCGTCTCCCACGCCAACCAGATCAACCGCGCCCTG
CGCAACGCCGGCGTGCCGGCGATCTGGAGCACCGAGTGGGGCTGGTCGGCCTACAAGGGGCCGAAGGAGTTG
CAGGACATCATTGGCGTCGAAGGCCAGGCCGACTACGTGCTGCGTCGCCTGGCGCTGATGAGTGCGCTGGAC
TACGACCGGATCTTCCTCTTCACCCTCAGCGATCTCGACCAGCGCGCCAGCGTGCGCGACCGCGACTACGGC
CTGCTCGACCTGGACGCCAACCCCAAGCCGGTCTACCTGGCCCTGCAACGCTTCCTCAAGGTCACCGGGCCG
AAGCTGCGCCCGGCCGACCCGCCGGTCACCGAGGACCTGCCCGACGGTTCCTTCAGCATCGGCTGGACCCGC
GAGGACGGTCGCAACGTCTGGCTGTTCTGGTCGGCCCGCGGCGGCAACGTGCGCCTGCCGAAGCTCAAGGAG
GCCACCCTGCACGATCCGCTCAGCGGCAAGGTCACGCCCTTGAGCGGCAGCGACGGCCTGGAAGTCCCGGTG
AAGTCCAGCCTGCAGATGCTGGTCTGGGAGTGA
Translation:
MARKGLYLGGSALLLAVVLLLVFWGRPADAEIQVLKAPRAVVWKDFLGVNAQFLWFSPERYNKQIDRLQDLG
LEWVRLDLHWDRLETAEDQYQLASLDQLVKDLEARQLKSVFYLVGSARFITTAPFYSPFQDQYPPRDPEVFA
RRMAMLSQRYPSVAAWQVWNEPNLIGFWRPKADPEGYAKLLQASTIALRMVDPEKPVVSAGMAFFSEMPDGR
TMFDALGHLGVESLGTIATYHPYTQLPEGNYPWNLDFVSHANQINRALRNAGVPAIWSTEWGWSAYKGPKEL
QDIIGVEGQADYVLRRLALMSALDYDRIFLFTLSDLDQRASVRDRDYGLLDLDANPKPVYLALQRFLKVTGP
KLRPADPPVTEDLPDGSFSIGWTREDGRNVWLFWSARGGNVRLPKLKEATLHDPLSGKVTPLSGSDGLEVPV
KSSLQMLVWE*
AnnotationID:1043GeneID:1034
AnnotatorUID: danlee
Modification Date/Time: 2005-10-10 16:04:35
Gene Name:pslG
Confidence Code:3
GeneProduct:putative glycosyl hydrolase
Cell Localization:()
Synonyms:PA2237
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(20) Putative enzymes
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG3664
Secondary Functional Category(ies):putative enzyme
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
gi|68345863|gb|AAY93469.1|  glycosyl hydrolase, putative [Pseudomonas fluorescens Pf-5]
     Length=431
     Score =  466 bits (1199),  Expect = 7e-130
     Identities = 237/435 (54%), Positives = 300/435 (68%), Gaps = 11/435 (2%)

gi|28853943|gb|AAO57009.1|  glycosyl hydrolase, family 5 [Pseudomonas syringae pv. tomato str. DC3000]
     Length=437
     Score =  460 bits (1184),  Expect = 4e-128
     Identities = 227/434 (52%), Positives = 297/434 (68%), Gaps = 4/434 (0%)

gi|71554174|gb|AAZ33385.1|  glycosyl hydrolase, family 5 [Pseudomonas syringae pv. phaseolicola 1448A]
     Length=437
     Score =  449 bits (1156),  Expect = 7e-125
     Identities = 214/410 (52%), Positives = 286/410 (69%), Gaps = 3/410 (0%)

gi|63257242|gb|AAY38338.1|  Glycoside hydrolase, family 5 [Pseudomonas syringae pv. syringae B728a]
     Length=437
     Score =  448 bits (1153),  Expect = 2e-124
     Identities = 212/410 (51%), Positives = 286/410 (69%), Gaps = 3/410 (0%)






 
Structural Features:
COG3664, XynB, Beta-xylosidase [Carbohydrate transport and metabolism].
             CD-Length = 428 residues,  97.4% aligned
             Score =  422 bits (1086), Expect = 4e-119






   
Genomic Context:






   
Comment:


















    ReferenceID:2071




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:19213




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:32536




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:1034_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:1034
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
1857
                           PA2237_tr
                           translation of PA2237
                           442
                           99.99
                           99.99
                           0
                           2340.0
     

     
     
64415
                           gb|AAG05625.1|AE004649_16
                           (AE004649) probable glycosyl hydrolase [Pseudomonas aeruginosa PAO1]
                           442
                           99.99
                           99.99
                           0
                           2340.0
     

     
     
64416
                           gb|AAO57009.1|
                           (AE016868) glycosyl hydrolase, family 5 [Pseudomonas syringae pv. tomato str. DC3000]
                           449
                           51.22
                           67.70
                           19
                           1188.0
     

     






      

          
GC ORFID: 44036How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA2237Glimmer Score: 

          
Start: 1782534Stop: 1783862

          
Length: 1329


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA2237 translation of PA2237Homolog Bit Score 905.0

          
Other Homologs:  t_PA2237 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGGCACGTAAGGGACTCTATCTGGGCGGCAGCGCGCTGCTGCTCGCCGTGGTACTGCTGCTGGTGTTCTGG 
GGGCGTCCCGCGGACGCCGAGATCCAGGTACTGAAGGCGCCTCGCGCGGTGGTCTGGAAAGACTTCCTCGGG 
GTCAACGCGCAGTTCCTCTGGTTCAGCCCGGAGCGCTACAACAAGCAGATCGACCGCCTGCAGGACCTGGGG 
CTGGAGTGGGTGCGCCTGGACCTGCACTGGGACCGCCTGGAAACCGCCGAAGACCAGTACCAGCTGGCCTCC 
CTCGACCAGTTGGTCAAGGATCTCGAGGCGCGCCAGCTGAAGTCGGTGTTCTACCTGGTCGGATCGGCCCGC 
TTCATCACCACCGCGCCGTTCTATTCGCCCTTCCAGGACCAGTATCCGCCGCGCGACCCGGAAGTCTTCGCC 
CGGCGCATGGCGATGCTCTCGCAGCGCTACCCGAGCGTGGCCGCCTGGCAGGTATGGAACGAGCCCAACCTG 
ATCGGCTTCTGGCGGCCCAAGGCCGATCCGGAAGGCTACGCCAAGCTGCTCCAGGCCAGCACCATCGCCCTG 
CGCATGGTCGACCCGGAGAAGCCGGTGGTTTCCGCCGGCATGGCCTTCTTCAGCGAGATGCCCGACGGCCGC 
ACCATGTTCGATGCCCTCGGCCACCTGGGCGTGGAGAGCCTCGGCACCATCGCCACCTACCACCCCTATACC 
CAGTTGCCGGAAGGCAACTACCCGTGGAACCTGGACTTCGTCTCCCACGCCAACCAGATCAACCGCGCCCTG 
CGCAACGCCGGCGTGCCGGCGATCTGGAGCACCGAGTGGGGCTGGTCGGCCTACAAGGGGCCGAAGGAGTTG 
CAGGACATCATTGGCGTCGAAGGCCAGGCCGACTACGTGCTGCGTCGCCTGGCGCTGATGAGTGCGCTGGAC 
TACGACCGGATCTTCCTCTTCACCCTCAGCGATCTCGACCAGCGCGCCAGCGTGCGCGACCGCGACTACGGC 
CTGCTCGACCTGGACGCCAACCCCAAGCCGGTCTACCTGGCCCTGCAACGCTTCCTCAAGGTCACCGGGCCG 
AAGCTGCGCCCGGCCGACCCGCCGGTCACCGAGGACCTGCCCGACGGTTCCTTCAGCATCGGCTGGACCCGC 
GAGGACGGTCGCAACGTCTGGCTGTTCTGGTCGGCCCGCGGCGGCAACGTGCGCCTGCCGAAGCTCAAGGAG 
GCCACCCTGCACGATCCGCTCAGCGGCAAGGTCACGCCCTTGAGCGGCAGCGACGGCCTGGAAGTCCCGGTG 
AAGTCCAGCCTGCAGATGCTGGTCTGGGAGTGA